tglobal.txt - pism - [fork] customized build of PISM, the parallel ice sheet model (tillflux branch)
(HTM) git clone git://src.adamsgaard.dk/pism
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tglobal.txt (6396B)
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1 .. -*- mode: rst -*-
2
3 .. default-role:: math
4
5 .. roles
6
7 .. role:: red
8 :class: red
9
10 .. role:: green
11 :class: green
12
13 .. role:: blue
14 :class: blue
15
16 .. role:: var(literal)
17 :class: variable
18
19 .. role:: opt(literal)
20 :class: option
21
22 .. role:: config(literal)
23 :class: config
24
25 .. substitutions
26
27 .. |petsc-min-version| replace:: 3.5
28
29 .. |pism-email| replace:: uaf-pism@alaska.edu
30 .. |pism-docs| replace:: https://pism-docs.org
31 .. |petsc-download| replace:: https://www.mcs.anl.gov/petsc/download/index.html
32
33 .. |efischer-email| replace:: elizabeth.fischer@columbia.edu
34 .. |jseguinot-email| replace:: seguinot@vaw.baug.ethz.ch
35
36 .. |pism-browser| replace:: PISM *Source Code Browser*
37
38 .. |config-cdl| replace:: ``src/pism_config.cdl``
39 .. |config-file| replace:: ``pism_config.nc``
40
41 .. |pism-regional-tools-url| replace:: https://github.com/pism/regional-tools
42 .. |pism-github-url| replace:: https://github.com/pism/pism
43 .. |pism-issues-url| replace:: https://github.com/pism/pism/issues
44
45 .. |mismip-url| replace:: http://homepages.ulb.ac.be/~fpattyn/mismip/
46 .. |mismip3d-url| replace:: http://homepages.ulb.ac.be/~fpattyn/mismip3d/
47 .. |eismint-url| replace:: http://homepages.vub.ac.be/~phuybrec/eismint.html
48 .. |ismip-url| replace:: http://homepages.vub.ac.be/~phuybrec/ismip.html
49
50 .. |sphinxcontrib-bibtex-url| replace:: https://sphinxcontrib-bibtex.readthedocs.io/en/latest/
51
52 .. external links
53
54 .. _Bash: http://www.gnu.org/software/bash/
55 .. _CalCalcs: http://meteora.ucsd.edu/~pierce/calcalcs/calendars.html
56 .. _CalCalcs-home: http://meteora.ucsd.edu/~pierce/calcalcs/index.html
57 .. _CDO: https://code.mpimet.mpg.de/projects/cdo
58 .. _CF-cell-boundaries: http://cfconventions.org/Data/cf-conventions/cf-conventions-1.7/cf-conventions.html#cell-boundaries
59 .. _CF Conventions: http://cfconventions.org/Data/cf-conventions/cf-conventions-1.7/cf-conventions.html
60 .. _CF-Calendars: http://cfconventions.org/Data/cf-conventions/cf-conventions-1.7/cf-conventions.html#calendar
61 .. _CF-standard-names: http://cfconventions.org/standard-names.html
62 .. _cf-names-for-glaciology: http://websrv.cs.umt.edu/isis/index.php/CF_standard_names_for_Glaciology_and_Ice-Sheet_Modeling
63 .. _cf-names-proposed: http://cfeditor.ceda.ac.uk/proposals/1
64 .. _CMake: https://cmake.org/
65 .. _CMake-cross-compiling: https://cmake.org/Wiki/CMake_Cross_Compiling
66 .. _Enthought: https://www.enthought.com/
67 .. _FFTW: http://www.fftw.org/
68 .. _Fink: http://www.finkproject.org/
69 .. _GSL: http://www.gnu.org/software/gsl/
70 .. _Git: https://git-scm.com/
71 .. _Git documentation: https://git-scm.com/doc
72 .. _Homebrew: https://brew.sh/
73 .. _IDV: https://www.unidata.ucar.edu/software/idv/
74 .. _LaTeX: https://www.latex-project.org/
75 .. _latexmk: http://personal.psu.edu/jcc8//software/latexmk-jcc/
76 .. _MPI: https://www.mcs.anl.gov/research/projects/mpi/
77 .. _MacPorts: https://www.macports.org/
78 .. _measures-ross: https://nsidc.org/data/NSIDC-0484
79 .. _NSIDC: https://nsidc.org
80 .. _NCL: http://www.ncl.ucar.edu
81 .. _NCO: http://nco.sourceforge.net/
82 .. _NetCDF: https://www.unidata.ucar.edu/software/netcdf/
83 .. _netcdf-classic-format: https://www.unidata.ucar.edu/software/netcdf/docs/file_structure_and_performance.html#classic_file_parts
84 .. _NumPy: https://www.numpy.org/
85 .. _Open MPI: https://www.open-mpi.org
86 .. _PETSc-installation: https://www.mcs.anl.gov/petsc/documentation/installation.html
87 .. _PETSc: https://www.mcs.anl.gov/petsc/
88 .. _PROJ: https://proj.org/
89 .. _PnetCDF: https://parallel-netcdf.github.io/
90 .. _Python: https://www.python.org
91 .. _Sphinx: http://www.sphinx-doc.org/en/master/usage/installation.html
92 .. _sphinxcontrib.bibtex: https://sphinxcontrib-bibtex.readthedocs.io/en/latest/
93 .. _UDUNITS: https://www.unidata.ucar.edu/software/udunits/
94 .. _Ubuntu: https://ubuntu.com/desktop
95 .. _X: https://www.x.org/wiki/
96 .. _XCode: https://developer.apple.com/xcode/
97 .. _XQuartz: https://www.xquartz.org/
98 .. _doxygen: http://www.doxygen.nl
99 .. _graphviz: http://www.graphviz.org/
100 .. _matplotlib: https://matplotlib.org/
101 .. _ncview: http://meteora.ucsd.edu/~pierce/ncview_home_page.html
102 .. _netcdf4-python: https://pypi.org/project/netCDF4
103 .. _pyngl: http://www.pyngl.ucar.edu
104 .. _SeaRISE-Greenland: http://websrv.cs.umt.edu/isis/index.php/Model_Initialization#Greenland
105 .. _searise-greenland-data: http://websrv.cs.umt.edu/isis/index.php/Present_Day_Greenland
106 .. _searise: http://websrv.cs.umt.edu/isis/index.php/SeaRISE_Assessment
107 .. _mismip-code: http://homepages.ulb.ac.be/~fpattyn/mismip/MISMIP_distribution.tar
108 .. _reStructuredText: https://docutils.readthedocs.io/en/sphinx-docs/user/rst/quickstart.html
109 .. _Emacs: https://www.gnu.org/software/emacs/
110 .. _GDB: https://www.gnu.org/software/gdb/
111 .. _LLDB: https://lldb.llvm.org/
112 .. _Valgrind: http://www.valgrind.org/
113 .. _ccache: https://ccache.dev/
114
115 .. _github-help-fork: https://help.github.com/en/articles/fork-a-repo
116 .. _github-pull-request-create: https://help.github.com/en/articles/creating-a-pull-request
117 .. _github-pull-request-allow-edits: https://help.github.com/en/articles/allowing-changes-to-a-pull-request-branch-created-from-a-fork
118
119 .. _git-branching-model: https://nvie.com/posts/a-successful-git-branching-model/
120 .. _git-fun-with-merges: https://gitster.livejournal.com/42247.html
121 .. _sphinx-autobuild: https://pypi.org/project/sphinx-autobuild/
122 .. _keep-a-change-log: https://keepachangelog.com/
123
124 .. _GitHub: https://github.com/
125 .. _CircleCI: https://circleci.com/
126 .. _CircleCI CLI: https://circleci.com/docs/2.0/local-cli/
127 .. _Docker: https://www.docker.com/
128 .. _MPICH: https://www.mpich.org/
129 .. _Spack: https://spack.io/
130 .. _Spack documentation: https://spack.readthedocs.io/en/latest/
131 .. _KDevelop: https://www.kdevelop.org/
132 .. _Kaye and Laby: https://web.archive.org/web/20190506031327/http://www.kayelaby.npl.co.uk/
133
134 .. _Ismip6-greenland: http://www.climate-cryosphere.org/wiki/index.php?title=ISMIP6-Projections-Greenland
135 .. _ParallelIO: https://ncar.github.io/ParallelIO/
136
137 .. _HDF5: https://portal.hdfgroup.org/display/HDF5/HDF5
138 .. _Lustre: http://lustre.org/
139
140 .. PISM-related external links
141
142 .. _pism-github: https://github.com/pism/pism
143 .. _pism-builds: https://github.com/pism/pism-builds
144 .. _PISM: https://pism-docs.org/wiki/doku.php
145 .. _pism-browser: https://pism-docs.org/doxy/html/index.html
146 .. _pism-email: mailto:uaf-pism@alaska.edu
147 .. _pypismtools: https://github.com/pism/pypismtools
148 .. _regional-tools: https://github.com/pism/regional-tools