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       Genetic patterns of world's farmed, domesticated foxes revealed via
       historical deep-dive
        
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       Credit: Anna Kukekova, University of Illinois Urbana-Champaign
        
       Domesticated animals play a prominent role in our society, with two-
       thirds of American families enjoying the companionship of pets and
       many others relying on animal products for their nutritional needs.
       But the process of domestication remains a bit of a mystery.
       Convincing wild animals they are safe enough to coexist and mate in
       enclosures and in close proximity to humans and other animals is no
       small feat. What does it take behaviorally and genetically for that to
       happen?
        
       For the most part, the animals we've domesticated have been docile for
       so long that there's no easy way to go back and study the transition
       from wild to tame. A notable exception is the domestication of red
       foxes—raised in captivity for their fur—starting in 1896 on Canada's
       Prince Edward Island. A team from the University of Illinois Urbana-
       Champaign has traced the process from its beginnings on the island to
       captive fox populations around the world, including some still in
       operation today.
        
       The work is published in the _Journal of Heredity_.
        
       "We have the historical documents, we have genetic information about
       wild fox populations all over the world, and we obtained samples from
       foxes bred in North America and Eurasia. So we can really dig into the
       question of how foxes were domesticated and how their genetics were
       shaped by geography and time," said lead study author Halie Rando, an
       assistant professor at Smith College who completed her doctoral
       research in the Illinois Informatics Institute, now in the School of
       Information Sciences, at Illinois.
        
       Rando, along with Illinois animal sciences professor Anna Kukekova and
       their collaborators, analyzed new and previously published
       mitochondrial DNA data from wild fox populations and from 10 captive
       populations in North America and Eurasia, including the site of the
       famous Russian fox domestication experiment. They then cross-
       referenced historical records related to the intercontinental trade of
       foxes, changing fur demand and farm sizes, and breeding practices.
       Together, the data allowed them to determine the geographical origins
       of farmed foxes worldwide and understand the role of genetic diversity
       in the domestication process.
        
       "When we do population genetics research, we're able to uncover
       history forensically," Rando said. "Looking at signatures that are in
       present populations, we can make inferences about the past."
        
       Early fox farmers were motivated by the demand for the silver variant
       of red foxes. Trying to trap rare silver foxes from the wild was
       unreliable and difficult, but breeding them in captivity had its own
       challenges.
        
       "The foxes were very hard to breed on the farms because they would get
       really stressed out and die or kill their offspring. It took a long
       time for them to figure out how to set up the breeding enclosures to
       reduce stress. Along the way, they were selecting for individuals that
       were better suited to the farm environment," Rando said. "They also
       managed to select for the silver fur color. Even without knowing any
       genetics, they figured out how to crack the code."
        
       After that, the industry boomed, with Canadian foxes being exported
       across the world. The genetic analysis showed that every captive
       population the researchers surveyed—even those in Eurasia—originated
       from wild North American foxes. In fact, there were no traces of
       genetic markers from Eurasian wild fox populations, suggesting any
       attempts at domesticating local populations were abandoned or
       overtaken by North American genetics.
        
       "This study helps to answer questions researchers have asked for years
       about the geographic origin and genetic background of these fox
       populations," Kukekova said. "Furthermore, some farm foxes may have
       mixed with native foxes through release events over the years in
       different locations. Occasionally, unexpected gene signatures show up
       in native populations, so our study may help to explain where they're
       coming from."
        
       World War II interrupted demand, and the industry never recovered in
       North America. In the USSR, however, fox farms quickly rebounded,
       aided by the government-supported fur industry.
        
       Overall, the genetic pattern reflects the more stable history of
       breeding in Eurasia. Although all the farmed foxes in the study were
       found to originate from North American wild foxes, populations in
       Eurasia were more genetically diverse, with greater representation
       from Alaskan and western U.S. genotypes in addition to common
       genotypes from Eastern Canada.
        
       "Some gene signatures were very rare and found only in certain
       Eurasian farm populations," Rando said. "The presence of these rare
       signatures, along with more diversity overall in Europe, could be due
       to more stable population sizes there after World War II, whereas
       those rare types may have been lost when North American farms
       collapsed."
        
       The study also sheds light on the famous Russian Farm Fox experiment,
       started in 1959 at the Institute of Cytology and Genetics (ICG) in
       Novosibirsk. The study originated with the selection of farm-bred
       foxes that showed the least avoidant behaviors around humans. Through
       successive generations, scientists selectively bred foxes with tame
       behaviors, eventually resulting in foxes as friendly as the family
       dog.
        
       The current study sampled that population and analyzed it along with
       the others, finding no unique genetic origins for the Russian foxes.
       To Rando, this suggests that farm-bred foxes may have the same
       underlying capacity to develop friendly behaviors.
        
       "I'd say we pretty conclusively demonstrated that the foxes in
       Novosibirsk are not meaningfully different from other farm-bred foxes
       in terms of their genetic origins. We also found that the populations
       in Novosibirsk were among the most genetically diverse captive
       populations, likely due to their meticulous pedigree records and
       carefully planned breeding," she said.
        
       Kukekova added, "It's informative to know that this one successful
       endeavor in Prince Edward Island really had a huge effect on modern
       populations that persists to this day. The model can help us study
       domestication broadly and find gene networks leading to tame behavior,
       which is something that humans have been interested in for a very long
       time."
        
       **More information:** Halie M Rando et al, Missing history of a modern
       domesticate: Historical demographics and genetic diversity in farm-
       bred red fox populations, _Journal of Heredity_ (2024). DOI:
       10.1093/jhered/esae022
        
       **Citation** : Genetic patterns of world's farmed, domesticated foxes
       revealed via historical deep-dive (2024, July 1) retrieved 3 July 2024
       from https://phys.org/news/2024-07-genetic-patterns-world-farmed-
       domesticated.html
        
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