[HN Gopher] mRNA's next challenge: Will it work as a drug? ___________________________________________________________________ mRNA's next challenge: Will it work as a drug? Author : mudil Score : 137 points Date : 2020-12-18 18:08 UTC (4 hours ago) (HTM) web link (science.sciencemag.org) (TXT) w3m dump (science.sciencemag.org) | napier wrote: | Paywalled for me. Perhaps someone could fix that? | knicholes wrote: | You could fix it by paying! :D | cinntaile wrote: | It seems to cost $15. Which is a bit excessive for what's | essentially a news article. News articles hardly have any | worth on its own nowadays. | Wowfunhappy wrote: | Because the parent appears to have been downvoted (as of this | writing), I'd just like to point out that according to the site | FAQ, their question is perfectly acceptable on HN. | | > _It 's ok to post stories from sites with paywalls that have | workarounds. In comments, it's ok to ask how to read an article | and to help other users do so. But please don't post complaints | about paywalls. Those are off topic._ | | https://news.ycombinator.com/newsfaq.html | | https://news.ycombinator.com/item?id=10178989 | macrolime wrote: | Link to full article | | https://sci-hub.se/downloads/2020-12-18/44/10.1126@science.3... | neonate wrote: | https://archive.is/h7MNM also works. | dzhiurgis wrote: | Does not for privacy respecting dns users | dsissitka wrote: | Or Brave users, or... did they ever unblock Finland? | | https://en.wikipedia.org/wiki/Archive.today#Finland | LordDragonfang wrote: | I'm wondering what a "privacy respecting" dns could | possibly have to do with breaking a web archival service. | | edit: huh | | https://www.reddit.com/r/pihole/comments/ao51ko/problem_wit | h... | | https://news.ycombinator.com/item?id=19828702 | colejohnson66 wrote: | If web.archive.org was used, it would work. Why do people | prefer archive.is? The Internet Archive is more established | and less likely to disappear. | neonate wrote: | In this case it doesn't have the article. | colejohnson66 wrote: | web.archive.org/save/{URL} works | napier wrote: | Thanks! | witweb wrote: | God bless Sci-Hub. Thanks for linking the full article. | dmix wrote: | Donate to Sci-Hub: | | https://sci-hub.tech/donation/ | | They accomplished one of Aaron Schwartz's dreams. | elektor wrote: | Is this the legit link to Sci-Hub? I'm a little surprised | to see Paypal allow donations. | msla wrote: | https://web.archive.org/web/20201218214338/https://sci-hub.s... | wildbunny wrote: | It's gone down | CaliforniaKarl wrote: | It's up for me. You may be in an area, or using an ISP, that | is blocking access to that domain. Unfortunately I don't have | any info to hand on alternate access methods, but I know they | exist. | h_anna_h wrote: | Enabling dns over https usually fixes any censorship by an | ISP issues. | deadalus wrote: | https://ipfs.io/ipfs/QmWiWELM9ArjAJvAsSiyZ5jSfjZERir3nGmbySV. | .. | macrolime wrote: | If it doesn't work you can try try replacing .se with .st or | .do | ce4 wrote: | Works for me, check if sci-hub.se resolves to e.g. | 186.2.163.219. | | Or just: | | curl --resolve sci-hub.se:443:186.2.163.219 --remote-name | https://sci- | hub.se/downloads/2020-12-18/44/10.1126@science.3... | hikerclimb wrote: | I hope not | ineedasername wrote: | mRNA might not pan out for more general purposes (well, | specialized for each use case) but it seems kind of crazy that | the most significant pandemic, social upheaval, and economic | crisis the world has known in 100 years could also lead to some | of the most significant advances in medical science & therefore | quality of & length of life as well. | | I'm not trying to downplay the health issues or impact of COVID, | just saying that it has the potential for one heck of a silver | lining. Not least of which is that even if other mRNA uses aren't | forthcoming, we're incredibly more prepared to fight another | pandemic, especially other Corona strains, that could be more | harmful. | maxerickson wrote: | The technology has been in development for decades, so in that | sense is a response to the pandemic, but it's not a result of | the pandemic. | | (the first SARS certainly encouraged vaccine research) | avancemos wrote: | The question is, how did this start just now? In 2020? How is the | COVID-19 vaccine the first to use mRNA? Anyone with who has taken | AP Biology could conceive of and understand the idea behind | making vaccines rapidly: take some mRNA, inject it, have in | translated as the antigen in the body. Poof, that's it. I feel | like the development of mRNA drugs should have started in the | 70's or 80's. It isn't exactly high-tech or clever. | dragonwriter wrote: | > Anyone with who has taken AP Biology could conceive of and | understand the idea behind making vaccines rapidly: take some | mRNA, inject it, have in translated as the antigen in the body. | | There was quite a lot of development on basic techniques of | working with RNA necessary before that could even in isolated | circumstances be easier than, or even competitive with, | "isolate the antigen, inject it, done". | | > The question is, how did this start just now? | | It didn't. | | Getting a treatment to market isn't the _start_ of application | of a new technique in medicine; its usually something that | happens many years, often decades, into work using the | technique. | iskander wrote: | >take[1] some mRNA[2], inject it [3], have in translated as the | antigen in the body[4]. Poof, that's it. | | 1) Develop synthesis technique for large scale high purity mRNA | without base errors or truncations. | | 2) Discover pseudouridine modification to decrease innate | immune response. | | 3) Discover and optimize lipid nanoparticles for encapsulation | of mRNA to prevent its degradation. | | 4) Optimize LNPs and miRNA sites in UTRs for localization to | desired cell type and to prevent aggregation in undesired or | dangerous cells/organs. | | Poof, that's it! | inglor_cz wrote: | "Poof, that's it." | | The immune system is incredibly dangerous to its own host if | mishandled. By stimulating response, you are trying to light a | cigarette using a white phosphorus flamethrower, so to say. | | It took a lot of time to find the optimal way of mRNA delivery | that a) really does something but b) does not provoke a | massive, counterproductive response. This is a very narrow | rocky ledge with precipices on both sides to walk. | kennywinker wrote: | > it isn't exactly high-tech or clever | | Read the history section of the rna vaccine wiki: | https://en.m.wikipedia.org/wiki/RNA_vaccine | | You're right, we've understood that this could be done for a | long time. Not quite the 70s, but.. at least the 90s. But | believing something is possible and knowing how to do it are | different: | | 1989 - injected rna maybe goes into cells | | 1990 - proof injected rna creates proteins | | 1994 - proof injected rna creates immune responses | | Then: | | "2005 they published a joint paper that solved one of the key | technical barriers by using modified nucleosides to get mRNA | inside human cells without setting off the body's defense | system" | | That kicked off a ton of research, but: | | "Up until 2020, these mRNA biotech companies had poor results | testing mRNA drugs for cardiovascular, metabolic and renal | diseases; selected targets for cancer; and rare diseases like | Crigler-Najjar syndrome" | | But why did they spend from 2005 to 2020 working on mRNA drugs | and not vaccines? Capitalism. Vaccines are not generally | profitable (take once, you're done) - so vaccines are not an | appealing target for a startup with investors wanting big | returns. (Source: https://www.statnews.com/2017/01/10/moderna- | trouble-mrna/) | denimnerd42 wrote: | Yeah seems like vaccine development only started after the | high profit objectives suffered failure. That doesn't mean we | can't go back to working on those objectives in the future | but they needed SOMETHING that would work to show mrna | promise. Vaccines you only have to take once or twice so the | side effects of immune response aren't too bad and you have | an immune response to a vaccine anyways. | kennywinker wrote: | Even for the staunchest capitalist, covid has clearly | outlined that we need medical research that is separated | from market forces. After sars 1 was controlled, research | in this area was all but dropped - despite virologists | warning that it was just a matter of time before... well, | this. | | Medical research needs to be driven by what can help | people, not by what can make the most money. | denimnerd42 wrote: | PPE too. We still don't have N95s for the public or in | some areas even the medical professionals. | | If we had a different administration in the USA we may | have been able to conquer that quickly with sheer cash | and coordination since the knowledge how to build melt | blown N95 machines is there. For whatever reason we just | didn't. | [deleted] | [deleted] | fintler wrote: | It did start in the 70s! | | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC433302/ | CharlesW wrote: | Another easily-searchable fact is that the COVID-19 vaccine | is not the first RNA-mechanism drug. | [deleted] | jfarlow wrote: | Delivery of the RNA is hard. To the right cell type, not | immediately degraded, not accidentally integrated into a | critical part of the genome, with a payload that is actually | effective, etc. | | The original gene therapies (early 2000s) were essentially RNA | therapies (adenovirus). And their unethical rush and subsequent | failures caused a bit of a 'gene therapy winter' [1]. We've | since made enormous progress on both the ability to safely | deliver genes, but also our ability to generate/design new | useful genes. | | [1] https://www.labiotech.eu/in-depth/gene-therapy-history/ | | > In 1972, a paper titled 'Gene therapy for human genetic | disease?' was published in Science by US scientists Theodore | Friedmann and Richard Roblin, who outlined the immense | potential of incorporating DNA sequences into patients' cells | for treating people with genetic disorders. However, they urged | caution in the development of the technology, pointing out | several key bottlenecks in scientific understanding that still | needed to be addressed. | armada651 wrote: | Can we please not spread the misinformation that mRNA can | somehow integrate into the genome? It feeds crazy conspiracy | theories around the vaccines. | jart wrote: | The parent was probably confusing RNA with adenovirus which | IIUC _does_ deliver DNA that integrates itself into the | genome. There are dozens of COVID vaccines under | development right. Many of them are in fact DNA vaccines. | To date they 've only been approved for vaccinating dogs of | rabies. The mRNA vaccines that companies like Pfizer are | making have the advantage of not permanently changing the | DNA in the target cells. Even with DNA vaccine it's not the | end of the world. For example, herpes simplex (cold sores) | is an example of a natural virus that integrates itself in | the DNA. But it's localized and it's not something that | your children are going to inherit. Another interesting | fact is that the Pfizer mRNA vaccine and others are | delivered using lipid nanobots rather than adenovirus which | I think is cool. But DNA vaccines have even potentially | cooler applications since it means the medical field might | for once be able to offer cures to illnesses, rather than | charging you for a pill every day. | usrusr wrote: | "incorporating DNA sequences into patients' cells" is a | wildly more dramatic approach than temporarily tricking a | number of cells into manufacturing some protein with mRNA. | It's almost like the difference between getting the browser | to run your page's js vs a full remote code execution | vulnerability. | postalrat wrote: | How can you say we made enormous progress when it appears | this is still an untested therapy. | jfarlow wrote: | The number of [nucleic-acid-delivered] gene therapies in | Phase II & Phase III trials right now is huge - because of | this progress in delivery [of nucleic acids]. Gene | therapies for the eye, for hemophilia, for sickle cell, | many many cancer therapies all rely on the ability to | 'deliver' nucleic acid payloads to cells. Of those, only 3 | or 4 have been approved - and all in the past 2 years, but | there are a huge number that are behind that tip of the | iceberg - quite precisely because it's relatively | straightforward to do 'same thing but with a different | sequence' once the first one works. | johntb86 wrote: | Wouldn't an adenovirus be delivering DNA? mRNA can't be | incorporated into the genome (barring some crazy mixing due | to a retrovirus) because it's RNA. | flobosg wrote: | mRNA is not the only type of RNA that can be delivered. | Another type could be interfering RNA targeting endogenous | coding or non-coding RNA molecules. | [deleted] | c54 wrote: | I think the theory behind it is straightforward enough (and | indeed, Moderna was founded 10 years ago with this sort of mRNA | vaccine as their explicit goal), but the practice is more | complicated. | | Figuring out what sequence of mRNA will be the right one to get | a cell to produce the right antibodies for the job, getting | that sequence sliced out of the viral RNA, getting that all | into a form where it can be absorbed by cells and not just | instantly degrade are all nontrivial tasks. | | The devil's in the details: compare to the field of software or | cpu engineering... seems straightforward enough to just have | more instruction decoders, but due to complexities only | ditching x86 has actually made it possible for Apple to do | this. | iscrewyou wrote: | It's not new. Work had been happening on mRNA. But the vaccine, | I assume, is humans working under pressure and finally making | it happen. | | I found this video (from 2013) in the other thread today about | the vaccine Moderna Vaccine taking two days to make: | https://news.ycombinator.com/item?id=25468959 | LetThereBeLight wrote: | The technology for synthesizing large quantities of specific | RNA sequences has only been available recently. Same goes for | forming the lipid nanoparticles that are used for encapsulating | and delivering the mRNA. In fact if anyone has more detailed | information on how these two processes are done I would love to | learn more. | rolph wrote: | PCR, the Polymerase Chain Reation. | | https://en.wikipedia.org/wiki/Polymerase_chain_reaction | | the emphasis in the wiki article is on DNA, the same basic | principles apply with RNA. | | for example you can start with RNA and use reverse | trancriptase to produce a DNA sequence, amplify that sequence | to a large copy number by repeatedly replicating it then | transcribe the DNA to produce large quantities of RNA. | | or you can start with the DNA [in large quantities of purity] | then create many copies of the RNA by repeatedly transcribing | the DNA. | | The practice of artificial [in vitro] gene synthesis can | create arbitrary sequences for input to the process[es]. | | https://en.wikipedia.org/wiki/Artificial_gene_synthesis | | liposomes are manufactured via biochemical-mechanical | process. | | https://en.wikipedia.org/wiki/Liposome#Manufacturing | vlovich123 wrote: | Given that Moderna is the first ever company to bring such a | vaccine to market and they've been working on mRNA for the past | 10 years, I imagine there's a lot of technical complexity to | actually deliver a therapy and then mass produce it beyond just | the basic concept. | | Reading how Pfizer and Moderna worked on it together, they | needed detailed gene sequencing to understand how to design a | potential vaccine. Even then they were left with a lot of | potential options they still had to whittle down. Finally even | with all that work they're left with a vaccine with complex | storage requirements. | | So it's entirely possible that we just didn't have the | surrounding technical ability even if theoretically it was | possible. The gene sequencing to sequence it quickly and share | that across the entire world, the compute needed to do try | different experiments at scale, the manufacturing capabilities, | Moderna having invested in the space for the preceding 10 | years, existing experience with developing a SARS vaccine, etc. | Narretz wrote: | I think you mean BioNTech not Moderna. | maxerickson wrote: | Pfizer worked with BioNTech, not Moderna. | | Moderna's vaccine is a great deal easier to store than the | BioNTech/Pfizer vaccine (requires 'normal' freezers for | storage, can be at refrigerator temperatures for a longer | period). | denimnerd42 wrote: | BioNTech and Moderna both have links to Katalin Kariko so | while they didn't explicitly work together on this the | knowledge comes from similar research and sources. | vlovich123 wrote: | Why is that the next challenge? Why aren't we using this on other | diseases we haven't been able to generate vaccines for and just | continue to research it as a general therapy since that's not yet | an "engineering" problem? | | HIV, Ebola certain cancers, etc. What about using it to train our | immune system for more complex diseases like Malaria or various | bacteria? What about investigating if the general techniques can | also somehow combat simpler diseases like prions which don't even | have RNA. | sradman wrote: | Good question. The article says: | | > These drugs face the challenges of targeting mRNA to specific | tissues and giving strong, lasting benefits without excessive | side effects. | | This innovation reminds me of Virginia Postrel's book _The | Fabric of Civilization_ : _How Textiles Made the World_ [1]. | Postrel describes several key technological innovations that | propelled the manufacture of cloth from fiber farming to thread | weaving to cloth weaving to cloth dying /decorating to | distribution. Each innovation moved the bottleneck to a | different layer in the value chain. | | The mRNA platforms are ideal for vaccines but ultimately, the | downstream safety/efficacy trials are the new bottleneck. There | was a time when futurists obsessed about nanobots but these | mRNA platforms are the ultimate nanobots, in my opinion. They | can be configured to program biological cells to manufacture | simple proteins in situ. This is a very powerful tool, but like | the historical innovations in spinning and weaving, the | technology can produced many orders of magnitude more | potentially useful outputs than the rest of the value chain can | use effectively (for now). | | [1] https://www.basicbooks.com/titles/virginia-postrel/the- | fabri... | newacct583 wrote: | Ebola, Malaria and HPV have working vaccines already, there's | no particular need for new technology there. HIV would be | interesting though. | | And bacteria aren't in general limited by immune response. The | immune system has zero difficulty detecting a bacterial | infection, but it happens at a wildly different scale and can't | be fought with a fundamentally chemical means like our bodies | do with virii. | | And the point about prions seems to misunderstand this | technique. The way an mRNA vaccine works is by transmitting | _blueprints_ for a viral protein (but not the rest of the | virus) into the body 's cells, where ribosomes then synthesize | the disembodied proteins, which get detected as "foreign | invaders" and produce a lasting immune response which would | then be effective against the real virus. | | Prions, remember, are just misfolded versions of your body's | own proteins. They have the same sequence of amino acids as | "correct" proteins and just an incorrect shape. mRNA only | transmits the sequence, not the shape. And in any case your | cell's DNA already _has_ the sequence encoded, because you 're | not dead. | raducu wrote: | Isn't HIV a special case though? | | The reason we don't have an HIV vaccine is because HIV | embedds itself in the DNA of some cells and some of those | cells don't start producing virions right away, the immune | system can't detect them, you clear the visible infection, | but just weeks after, those hidden cells start producing the | virus and the infection starts over. So the issue with HIV is | the hidden reservoir of infected cells, afik. | fabian2k wrote: | The mRNA vaccines do also transmit the shape, as the encoded | viral protein does get expressed in the cells. And the shape | does get recognized by the immune system when that protein is | secreted from the cell. But there is also a shape-independent | mechanism that works on the sequence alone. The proteins in a | cell are also chopped into tiny pieces and presentend on the | surface. That part could not distinguish between different | folded versions of the same protein like with prions. | vlovich123 wrote: | I think I was misunderstood a bit. I wasn't proposing that | mRNA in its current state (or even solely by itself) would | somehow be able to cure prion diseases. | | I was thinking more that research into biotech generally | improves our knowledge. I don't know biology at all but I | figured some evolution of technologies associated with | CRISPR + mRNA + other things would be useful as a team in | solving prion diseases. So maybe mRNA can become efficient | enough that it's used to train the immune system to target | the misfolded proteins themselves to try to limit damage | while the treatment is ongoing. Futuristic now certainly, | but is it definitely 100% impossible ever even as our | knowledge & tech improves? Or maybe mRNA can exploit | something in the prion process we don't yet understand. | Maybe CRISPR could be part of the overall treatment therapy | as you inoculate more of the body from whatever is | propagating the bad code through your body which could be a | time-consuming process (think vaccine at the genetic level | - you potentially need to get it to every cell in the | body). | | Obviously this is all sci-fi stuff & some of it impossible | & out there. I still like to imagine sci-fi is useful as | potential roadmaps to brainstorm how we might solve | impossible problems - even if we miss, we'll land somewhere | useful. | flobosg wrote: | > They have the same sequence of amino acids as "correct" | proteins and just an incorrect shape. | | Somatic mutations can trigger the misfolding as well. | jcims wrote: | Do prions typically occur because of a defect in the RNA or | are there just certain protein structures that have | instability in how they fold? | kens wrote: | Prions can happen multiple ways. In familial (i.e. | hereditary) CJD, a mutation in the PRNP gene (DNA) creates | an abnormal misfolded protein, i.e. prion. In sporadic CJD, | it's basically bad luck that the protein gets folded wrong. | In acquired CJD, exposure to brain tissue with the prion | protein causes it. Once there's a prion, it causes more of | the protein to misfold, creating more prions and causing | the disease. | strbean wrote: | In my understanding, a defect in the RNA that affected the | protein would necessarily result in a different amino acid | sequence. So for prions to form, they would have to be | misfolded initially due to chance / environment or re- | arranged afterwards through some process. The best known | protein to form prions (PrP, Prion Protein) is known to | convert from the well-folded form to a misfolded form upon | interacting with the misfolded form, which could indicate | that spontaneous formation of prions is due to interaction | with something after the initial folding. I think this | could also just be an indication that PrP just has lots of | very close low-energy states, which would mean a higher | chance of misfolding initially. | | - Mostly lay person view (some bioinformatics experience) | [deleted] | type0 wrote: | because the prions are chaperones, i.e they can fold other | proteins | jcims wrote: | That's how they turn your brain into Swiss cheese right? | I'm just wondering how they are formed, are they | misfolded normal proteins or just alien like virii. | bbojan wrote: | They are misfolded body's normal proteins, with a nasty | side effect that they cause the normally folded copies of | the same protein to also misfold in the same way. The | result is a chain reaction of sorts. | rzwitserloot wrote: | nitpick: virii is wrong. | | The latin plural of 'virus' does not exist. It is a nebulous, | uncountable concept to ancient rome. Like 'malaise' or | 'ocean' (we can pluralize oceans in english, but hopefully | you can imagine that a language would treat it as a concept | for which the concept of pluralization doesn't make sense). | | You'd think: Hey, it's `-us`, I know that one, it pluralizes | to `-i`, but, no. There is no plural. It's a rare form that | also ends in -us but doesn't work like most of the words you | know derived from latin that end in -us. | | But there is `vir`, latin for 'man', and the plural of that | is viri. | | So, 'viri', as in 'the latin pluralized form of virus', is | dead wrong. | | There is no -ii ending in latin. At all. | | The plural of 'virus' in english is 'viruses'. Any other form | is stupid. Sometimes language does that, but surely you'd | agree that something like 'irregardless', whilst somewhat | common, sounds very unprofessional. virii is the same way. | newacct583 wrote: | Now _that_ is an HN comment. | admash wrote: | > There is no -ii ending in latin. At all. | | Should you mean no -ii ending to "virus" at all, it would | appear to be a reasonable assertion. However if by "at | all", you mean of any word in Latin, that is demonstrably | false. | | http://latindictionary.wikidot.com/noun:filius | | Nominative and vocative plural: filii | | Usage example: | | "... et nihilo minus amicum gravem virum aut fidelem | libertum lateri filii sui adiungere, ..." | | https://thelatinlibrary.com/quintilian/quintilian.instituti | o... | ink_13 wrote: | I'll bet you 10 denarii you're wrong about suffixes. | anonymfus wrote: | But that comment was written in English, not Latin, and | such irregular pluralisation is better to be treated as a | feature of the modern English. People generally do this not | because they someway learned Latin incorrectly but because | they noticed how other English speakers pluralise Latin | looking words, and that is exactly how new grammar rules | are adopted. | | Also by referring to ancient Rome you treat Latin as some | sort of a fixed, dead language, but English speakers do | that irregular pluralisation to words borrowed from the | modern languages descented from Latin too (see _cappuccini_ | ), and so for example in Romanian plural of _virus_ is | _virusuri_ , and in Neo-Latin it's _vira_. Personally I | want to prefer _virusuri_ just because it 's the funniest | one. | thereisnospork wrote: | > There is no -ii ending in latin. At all. | | Triarii? | | (My knowledge of latin as a language comes primarily from | Rome Total War). | blakesmith wrote: | I've been a little out of the loop on how COVID vaccines were | different than others. In case you're like me, here's a nice | primer on "mRNA vaccines": | https://www.cdc.gov/coronavirus/2019-ncov/vaccines/different... | shiny wrote: | I liked this guy's explanation: | https://www.youtube.com/watch?t=1313&v=wb_0FB7XiqA | | My main questions after watching: how long do the spike | proteins attach to our cell membranes? Do they get cleaned up | eventually? | | Also, will it lead to damage to the cell in anyway? | stanford_labrat wrote: | There is a YC company who are currently using mRNA based drugs | for telomere extension. | jart wrote: | My Google fu is failing me. What company is that? Sounds like | Elysium. | stanford_labrat wrote: | Rejuvenation Tech! (S18) | _greim_ wrote: | Okay, layman's speculation: Given we can co-opt cells to | manufacture proteins for us like this, and given we can predict | what shape of protein an mRNA strand would produce, does this | open up all sorts of potential in medical treatments? Tear it | apart, HN. | flobosg wrote: | > given we can predict what shape of protein an mRNA strand | would produce | | For therapeutic proteins you usually work the other way around: | You design the shape and try to get a sequence that folds as | intended. In other words, the inverse folding problem. | [deleted] | elcritch wrote: | The parent is referring to the recent DeepFold success in | predicting protein shapes from DNA/RNA, which means it | appears to have solved the inverse folding problem for many | proteins (modulo more exotic protein "features"). I haven't | read the article (yet), but presumably being able to go from | desired protein shape to plausible nucleotide sequences to | mRNA to produce them would enable a lot of drugs to be | developed that were cost/resource prohibitive previously. | Presuming you can get access to DeepFold and the compute time | to run it on semi-random sequences until you get matching | shapes. | kens wrote: | I'm not sure I understand the question, as that's the point of | the article. Clinical trials are currently testing mRNA to | produce proteins to treat cystic fibrosis, heart failure and | various obscure conditions. There are various problems, such as | ensuring the the protein is created in the right cells, | requiring repeated doses so the protein is created over a long | time, handling side effects, and increasing the amount of | protein created. So mRNA isn't an easy solution. | arrosenberg wrote: | Yeah, that's basically what the article discusses. It will be | easier for non-targeted treatments that can circulate the whole | body. This tech (by itself) doesn't really solve the issue of | delivering site-specific medication. | tboyd47 wrote: | On face value, it sounds less risky than the standard vaccine | development route, which may involve introducing immortalized | (i.e. cancerous) cells or artificially stimulating an immune | response with known toxins (adjuvants). | | I still have questions about the mRNA vaccine concept. Maybe | some well-informed HNer can shed light? | | 1. If the goal is to get the desired protein inside the | patient's body, why is injecting mRNA that produces the protein | more effective than simply introducing the protein itself? | | 2. How does the patient's immune system know to treat this | protein as unwanted if it's being produced by the body's own | cells? | | 3. How do vaccine developers avoid creating an over-active | immune response in the patient (i.e. an allergy)? | therein wrote: | I have been asking the very same questions, especially the | (2). | | So far, nobody has been able to provide a satisfying answer. | rolph wrote: | there is a system homologous to machine learning 2factor | authentication. | | in very loose terms both keys must be presented while the | immune system is in training, the instances where protiens | are expressed with out cell surface recognition molecules | in proximity are invalid thus foriegn, and memory immunity | to this "failed login" is maintained. when both factors | [protien plus recognition] are present constituitively over | the course of development the immune response is squelched. | | this is known as central tolerance. | | https://en.wikipedia.org/wiki/Central_tolerance | fabian2k wrote: | The simplistic answer is that the immune system tries out | new antigen-detecting cells in a safe environment before | letting them run around with a loaded gun. Any cell that | activates in that safe environment is destroyed, as it | recognized one of your own antigens. | | The other mechanism is that the immune system doesn't react | only to foreign antigens, there also needs to be some | general activation of the immune system in that area for a | real response. | | The full answer is that this is really, really complex like | pretty much everything involving the immune system. And | auto-immune diseases indicate that the immune system | doesn't always get this right. | tboyd47 wrote: | How is that general activation achieved in the case of | this mRNA vaccine and the others that will surely follow? | fabian2k wrote: | RNA itself is suspicious because it's a major component | of many viruses. So some kinds of RNA will activate the | innate immune system strongly. | tboyd47 wrote: | That's really interesting and confirmed with some light | searching. Thanks! | BurningFrog wrote: | > _2. How does the patient 's immune system know to treat | this protein as unwanted if it's being produced by the body's | own cells_ | | The immune system can't know who produced a certain molecule. | gostsamo wrote: | 1. A single rna can produce multiple times the protein, | because it is like the proverb about giving someone fish and | teaching them fishing. | | 2. Someone already said, but a protein has no marker saying | "local produce". It is either allowed or not and the body | reacts or not when detecting it. | | 3. They hope. Measure the dosage and adjust. As it was | reported, some people getting the vaccine have an allergic | reaction, but hopefully it will be rare and under control. So | far there are only a few cases reported. | [deleted] | fabian2k wrote: | Adjuvants are not toxic, they're simply known to enhance the | immune system response (so they are something that indicates | danger to the immune system). The immune system is incredibly | dangerous and destructive, and you really don't want to | trigger it without reason. So injecting something unknown | might not be enough to get the immune system fully alarmed, | that's why some vaccines add adjuvants to produce a stronger | response. RNA can be an adjuvant by itself, as it's also a | typical component of viruses and the immune system reacts to | that. | | So the trick really is to design the RNA and the delivery | system so that it produces an immune response of the right | magnitude. Too weak and it doesn't work, too strong and it's | harmful. | | Antibodies that bind to your own proteins are filtered in an | earlier stage in antibody production. Real viral proteins are | also produced by your own cells, so that is never a factor by | which you could distinguish friend from foe. | raducu wrote: | 1. I guess for smaller batches it is easier to develop the | mRNA. Otherwise, we would have monoclonal antibodies and not | a vaccine(the vaccine has other benefits, it trains the | T-cells and the B cells remain dormant even after no | abtibodies are detected in the blood). | | 2. The imune system knows all your protein already, t cells | are evolved in the thymus gland, if they attack anything | "self", they get destriyed. | gus_massa wrote: | > _which may involve introducing immortalized (i.e. | cancerous) cells_ | | Which one? I don't remember any vaccine that injects | immortalized cells. | tboyd47 wrote: | Feel free to correct if I'm misinterpreting: https://en.wik | ipedia.org/wiki/Use_of_fetal_tissue_in_vaccine... | rolph wrote: | the vaccine doesnt contain fetal cells, in the case you | are providing the vaccine is an attenuated virus | approach. | | the cells are used to manufacture quantities of the virus | in an extremely weakened form. This gives a chance for | the immune systemto mount a response before the pathogen | initiates systemic disease response. | | the cells in question are not freshly harvested from a | foetus, the progenitor cells are harvested and kept in | continual culture for use. the reason immortalized cells | are used is to escape the "expiry date" of a normal cell. | | >>Some vaccines currently available were developed using | cell strains cultured from two fetuses aborted for other | purposes in the 1960s.[6]<< | | i lifted this link from the wiki page provided: | | https://en.wikipedia.org/wiki/Immortalised_cell_line | tboyd47 wrote: | Thanks. | theophrastus wrote: | A layman's speculation followed by a layman's (at least in | terms of immunology) question: introduce a novel mRNA, cells | produce novel protein, it is presented to the immune system as | something to foment a defense again: vaccine. But the article | talks about using this mechanism to replace a functional copy | of a genetically missing enzyme. How is it assured that this | will assume the opposite goal and not become another target for | the immune system to guard against? | strbean wrote: | Seems to be working well so far for COVID vaccines. We're about | to witness a very large scale test though. | ryanianian wrote: | On the opposite side: how do we effectively convince people | this new type of vaccine is safe long-term? I'm not a biology | person, so I trust the biology people when they say it's safe, | but many don't. | | My intuition is that many cancers can start when proteins are | mis-copied, and mRNA therapy seems to rely on copying to work | very reliably. Does introduced mRNA increase the risk or | impacts of mis-copying? | | Is there an ELI5 intuition for why mRNA therapy is safe and | won't lead to cells becoming cancerous? | raducu wrote: | I don't think mRNA spreads from cell to cell, the mRNA enters | a limited number of cells and those cells start producing | certain proteins the mRNA tells them to. | sveiss wrote: | I'll state upfront that I'm not a biologist, but here's my | attempt at the explanation. | | The ELI5 version: | | Think of the cell as a factory for proteins. The blueprints | for all of the different kinds of proteins it can produce are | encoded in DNA and stored in the foreman's office. When the | cell wants to make a particular protein, the foreman copies | the instructions from the blueprint onto slips of paper | (mRNA), and sends them to the assembly line workers. This | type of copying happens all the time, and is pretty reliable | -- and even if it's not, the end result is just some wasted | time and a junk part. The blueprints are unaffected. mRNA | vaccines sneak some unauthorized instructions to the workers, | who then run a ghost shift to produce the protein we want to | cause an immune response to. | | When we need to create a second factory, we need to photocopy | all the blueprints for the new cell. This uses a totally | different process (a photocopier assembled specifically for | the job of copying whole blueprints onto more blueprint | paper, and not the work-order slips sent to the assembly | line). The photocopier is pretty reliable too, but | occasionally it introduces artifacts, and eventually, enough | of these errors can build up to create mistakes in the | blueprints. The blueprints have instructions on how to deal | with errors in a new factory (by blowing it up), but if | enough of those failsafe instructions are obscured by copier | artifacts, you now have a potentially cancerous cell. | | The foreman's office doesn't usually make changes to the | blueprints based on work order slips. It's possible with a | special copy machine -- this is how HIV works, by sneaking | that machine in -- but without a work order slip to blueprint | copier, it doesn't matter how many fake work order slips we | pass into the cell. They will only affect the production | line, not the foreman's office. | | The more detailed, and almost certainly wrong-in-the-details | version: | | There are three types of encoding for genetic material: in | DNA, in RNA, and in proteins. | | In order for the information encoded in genetic information | to be active in a biological system, it has to be expressed | as a protein -- a physical manifestation with binding sites | and the ability to interact with other molecules. Ribosomes, | a component of the cell, do the "assembly" part of | transferring genetic information to a protein. This is called | "translation". | | DNA is the long-term storage of the information eventually | expressed as proteins -- it's a collection of templates in | long term storage. So there has to be a process to get | information from the long-term storage of DNA, in the nucleus | of the cell, to the ribosomes elsewhere in the cell. | | Messenger RNA is the intermediary molecule which carries the | genetic information from the DNA to the ribosomes. It's | produced in the nucleus of the cell by a mechanism called | "transcription", which copies a subset of a DNA molecule into | a complementary RNA molecule encoding the same information. | The DNA double-helix is "unzipped", a complementary RNA | strand is assembled, and the double-helix reforms. The mRNA | can then be transported to the ribosomes. | | mRNA is a useful vaccine mechanism, because we're co-opting a | late stage of the cell's protein production pipeline. We | don't have to assemble the target protein by hand and figure | out how to modify it make it stable for distribution -- a | task that would need to be repeated for each protein we | wanted to make. Instead, we can figure out how to synthesis | mRNA, and we don't need to worry about either synthesis or | stability for the end protein product. | | When we talk about cancer and mis-copying, this is at a much | earlier stage in the pipeline. When a cell splits into two | cells through mitosis, we don't want a subset of the protein | templates in the cell's genetic material; we want a complete | copy. This is a separate biological pipeline, which involves | the cell building up a mechanism to do the copying, | dissolving the membrane of the nucleus, and ultimately | producing and collating copies of all the DNA from the | nucleus. This is an entirely separate process, and messenger | RNA isn't involved at all. | | There is a route for information to travel from RNA back to | DNA, and this is the mechanism retroviruses use, and HIV is | the most famous example. A complete retrovirus particle | includes reverse transcriptase, an enzyme which allows them | to transfer information from RNA back to DNA. This is the | reverse of the normal DNA -> RNA pattern described above, | hence the name _retro_virus. Without that enzyme or something | like it, there isn't a pathway to convert RNA back to DNA, | and human cells don't normally express an enzyme which has | this function. | delecti wrote: | Cancers start when DNA is mis-copied. Typically DNA is copied | to RNA, which is then used to generate protein, and there | isn't usually a mechanism for that RNA to go back a step to | become DNA again. I don't want to say it's impossible, or | that there's no conceivable negative effects, but cancer | seems like an implausible result from mRNA therapy. | dharma1 wrote: | Not related to mRNA therapy, but retroviruses use reverse | transcriptase to attach their RNA to the DNA of the host | cell | delecti wrote: | Thank you, that's a good addition. I knew it didn't | happen with mRNA, but also knew that there was _a_ route | from RNA to DNA, though I couldn't remember what. That's | why I hedged my statement with "usually". | mamon wrote: | > how do we effectively convince people this new type of | vaccine is safe long-term? | | Same as always: do a long-term clinical trial and look for | any side effects. | lucaswoj wrote: | This is Moderna's goal https://www.modernatx.com/mrna- | technology/mrna-platform-enab... | localhost wrote: | I did some reading on this back when this was all announced, and | wrote it down on Twitter. This tweet [1] links to a Nature paper | that describes applying mRNA vaccines to cancer. If you scroll | up, you'll also see pointers to other papers that I found along | the way when I was learning about mRNA vaccines in general. | | [1] https://twitter.com/john_lam/status/1333632894720380929 | supernova87a wrote: | I would love to know (to assuage any family members' doubts) -- | | Are there _any_ possible long term side effects of using such an | mRNA drug that are yet unanticipated? All the short term side | effects are known / will soon be. Anything beyond that, we | haven't had enough experience to know? | AntiImperialist wrote: | > _Are there any possible long term side effects of using such | an mRNA drug that are yet unanticipated?_ | | I'm not sure but I strongly assume yes. | | The MAIN reason for this skepticism is that if it was just | possible to introduce RNA such that we could have a net | positive benefit against coronavirus, a virus that has existed | for almost as long as mammals have, we'd have naturally evolved | this ability. | | The reason we haven't is because it will introduce more | problems than it solves down the line. | | It could very well be that with a limited understanding of | human immune system, we have stumbled upon a solution to a | problem that has affected us for millions of years. So, I think | some people should try it. But forcing it on the masses is a | terrible idea. | macksd wrote: | Look, I'm more willing than most to agree that forcing a | medical procedure on the masses is a terrible idea. I'm even | more willing than most to agree that not every vaccine will | have a sufficient cost/benefit trade off for everyone. I have | low-exposure and low-risk to COVID so I'm content to wait a | while for the vaccine. I have questions in my mind about how | we're so sure that a big shot of mRNA can't somehow cause a | risk of birth defects, etc. But... | | >> The reason we haven't is because it will introduce more | problems than it solves down the line. | | This is just not sound reasoning, and it's a terrible | argument against the vaccine. Have you ever taken | antibiotics? Or have you ever benefited long-term from | anything medical that we didn't "evolve" through natural | selection? Because I sure as hell have. How does this not | apply to other vaccines, which have clearly saved an | astonishing number of lives, and have, almost without | exception, not produced the kind of long-term existential | threats to humanity you seem to be hinting at. | reissbaker wrote: | This take implies that no medicine for deadly diseases can | work because otherwise we would have evolved the medicines | ourselves. | | Also, COVID-19 has not been around "for millions of years." | Other coronaviruses, such as the common cold, have. The | evolutionary benefits of defense against the common cold are | fairly different than benefits against COVID-19. And immunity | against one coronavirus doesn't grant immunity against all | other coronaviruses. | throwaway316943 wrote: | Two points, the most effective treatments we have for | deadly diseases are vaccines which are effective precisely | because they rely on our naturally evolved defences. | Antibiotics are a runner up but are eventually rendered | ineffective by evolution of bacteria they target. Second, | Covid-19 is only new to humans, given time it will adapt to | us and will likely attenuate. | majormajor wrote: | > The MAIN reason for this skepticism is that if it was just | possible to introduce RNA such that we could have a net | positive benefit against coronavirus, a virus that has | existed for almost as long as mammals have, we'd have | naturally evolved this ability. | | We'd have naturally evolved the ability to train our immune | systems against specific things it hasn't seen before? How | would that POSSIBLY work? | | The novelty of this particular coronavirus is sort of the | problem here, since people don't already have immunity, so | your "millions of years" thing is completely off base. | | You seem to be arguing against the possibility of a | "universal vaccine" for all viruses but that's entirely not | what this is. It's very specifically targeted and the idea | that we'd evolve the ability to target things specifically | _without actually being exposed to them_ in the same way is | plainly nonsense. | blackbear_ wrote: | Actually, the ability to respond to never-seen-before | threats is the whole purpose of the adaptive immune system | [1]. | | > How would that POSSIBLY work? | | Through a process called V(D)J recombination [2]. | Essentially, every lymphocyte gets a different receptor of | random shape, and purely by chance there will be a few | lymphocytes with a receptor that matches the shape of the | invading viruses (in most cases). | | [1] https://en.wikipedia.org/wiki/Adaptive_immune_system | | [2] https://en.wikipedia.org/wiki/V(D)J_recombination | ch4s3 wrote: | Probably not. There was about 20yrs of research on using mRNA | for gene therapy before the CRISPR/Cas9 discovery. It was | abandoned as a route for gene therapy specifically because it | wasn't long lasting. The mRNA isn't incorporated into the DNA, | so it isn't reproduced by the cells and eventually breaks down. | Things inside of cells are flying around at high speeds and | constantly colliding, so it's not a very stable environment. | | There are people that this was tested on still hanging around | with no lasting negative effects (to my knowledge). | marvin wrote: | My partner, a biochemist, has mentioned the potential | possibility of RNA viruses causing the RNA of the vaccine to | stabilize as some sort of DNA structure. Normally RNA is | quickly broken down by RNase, but apparently RNA viruses have | a mechanism to defend against this, that it's possible to | imagine having an interaction with an RNA vaccine. | | I don't know anything about biochemistry, and I'm aware that | the above is just remote speculation. It is meant as an | example of food for thought. But I do wonder when a whole | field of scientists state "there is no possibility of | unexpected long-term side effects" to a therapeutic tool that | has never been used at anything resembling this scale. | | Would love to hear more experts discuss why this is | considered sufficiently long-term safe to make the decision | of vaccinating a billion people after nine months of testing. | Am I missing something, or is it just a question of the | precautionary principle in this case being considered too | costly? | jgable wrote: | Given that this pandemic has killed millions, shut down the | world economy, and caused untold long term damage to | children due to lack of stable schooling: yes, it's because | the precautionary principle is too costly. | | Edit: sorry, my comment may have sounded snarky, which was | not my intention. World-wide vaccinations do carry a risk. | It's just that such a risk clearly pales in comparison to | the very known downsides of the current situation. I am in | no way a vaccine expert and cannot comment intelligently on | why long-term risks are considered to be low. | darkerside wrote: | There could certainly be a logical error in play here, but | considering this is mRNA, and not DNA, it seems like it | would be fairly amazing for it to spontaneously form into | DNA. Similar to a load of parts spontaneously forming into | a bicycle. | | That's not to say it isn't possible, but many things are | possible but sufficiently unlikely that we take those | risks. We eat, drink, and breathe many things every day | that we don't fully understand the ingredients or impacts | of. | greedo wrote: | Just a slight correction; as I understand it, these | vaccines are prophylactic, not therapeutic. | akiselev wrote: | _> Would love to hear more experts discuss why this is | considered sufficiently long-term safe to make the decision | of vaccinating a billion people after nine months of | testing. Am I missing something, or is it just a question | of the precautionary principle in this case being | considered too costly?_ | | FDA approvals aren't a black and white affair. Some drugs | are approved as orphan drugs through trials designed to be | much cheaper than Phase 1-3 trials when they treat diseases | that wouldn't be profitable for pharma, for example, and | there is a path for preliminary compassionate use approvals | and accelerated development for stuff like chemo where the | disease is terminal anyway. The FDA works with each company | to tailor the process to their needs (although, obviously, | they stick to a strict standard unless there's good | justification). | | Likewise, the vaccine rollout won't be all or nothing. We | won't even have a billion doses for a long while and the | focus will (likely) be on vaccinating those for whom the | benefits outweigh the extra risk like front line medical | staff and the immunocompromised or elderly. I don't expect | the world to get vaccinated at gun point, although the | rules for schools and other institutions will quickly | accumulate to cover most of the population. | | Personally, I'm not going to be taking the vaccine for a | while since no one in my family is at risk and we're | (mentally) preparing for several years of varying levels of | isolation and other precautions. I have faith in the system | for the most part since I've worked on an FDA application | before (clinical diagnostics, not therapeutics), but the | kind of geopolitical and economic pressure its under right | now is unprecedented and should keep epidemiologists up at | night (hell, it probably does). It's going to be up to each | individual to balance their risks and obligations at least | until we get more data. | MrBuddyCasino wrote: | Has there ever been an instance of genetic transformation as | a consequence of a mRNA vaccine? Saw this listed as a | potential risk in a paper[0], but I have no expertise at all | to judge if this a possibility or not. | | [0] https://www.mdpi.com/2076-393X/8/2/212/pdf | blackbear_ wrote: | If you are referring to the following sentence in the | introduction, I understood it to mean the opposite: | | > Moreover, mRNA vaccines induce transient antigen | expression, while DNA vaccines provide a long-lasting | expression, thus mimicking an acute viral infection. | Although a transitory gene expression might be desirable as | it minimizes potential risks of genetic transformation, | this inevitably affects mRNA potency, thus necessitating a | dose increase. | | This means that mRNA reduce the risk of genetic | transformation compared to DNA vaccines, but it comes as a | price because you have to deliver a larger dose of mRNA. | aazaa wrote: | Some clinical work has been done with mRNA vaccines as | treatments for other diseases, including cancer. Nothing has | made it to Phase 3 yet (other than for Covid-19), but on this | page you'll find links to a slew of clinical trials over the | years. | | https://www.modernatx.com/pipeline/modernas-mrna-clinical-tr... | | A handful of studies are currently recruiting for Phase 2, so | that means there was a successful Phase 1 some years ago. So | those people would, I believe, be the longest-surviving | patients to have received an mRNA vaccine. | Scoundreller wrote: | The Phase 1 study might just mean it didn't immediately harm | the people that got it. | | They might be followed closely for a long time; but it may | only be a handful of people too. | biophysboy wrote: | I work with RNA, but not in medicine. mRNA is not a long-term | molecule in the body, so its difficult to imagine direct long- | term effects. Of course, immune responses can cause long-term | damage. So the question is: should we wait to find out? | | The doses have 30-100 ug. Assume 1)this is pure RNA, and 2)the | molecules are about the same size as the spike protein | sequence. With these assumptions, a dose gives you 10^10 RNA | molecules. Average sputum samples show about 10^6 molecules/mL; | max samples show 10^9/mL. I don't know how vaccines dilute when | you inject it into somebody's shoulder, but it doesn't seem | unreasonable to say the final conc will be between 10^6 and | 10^9 RNA/mL. | | So RNA is going to be in us, whether we want it or not. The | question is, do you want the whole genome, or part of the | genome. I'm picking the one that doesn't make more virus. | IfOnlyYouKnew wrote: | The difference to "traditional" vaccines is really not | significant with regards to risk. | | The mRNA is translated to a protein, which is the actual target | your immune system then recognises as foreign, attacks, and | remembers. | | In a sense, it's a lot like a prodrug, which is a "traditional" | small-molecule that is turned into the actual drug by some | interaction with your body-your stomach acid, for example. | | "mRNA" might sound scary. But it isn't going to change your | genome or anything like that; it's strictly downstream from | DNA. Any virus, bacteria, or salad you eat contains far more | mRNA in addition to DNA or RNA, and the first of those really | does come with mechanisms to insert itself into your cells' DNA | and has evolved to defend itself against your defences, and to | slowly take over your body in some way or other. | | There are some short-term risks on the order of, say, eating | lobster for the first time. Allergies, for example, which can | be quite severe and even deadly. But those are exactly the | risks the trials would have uncovered, and the people possibly | at risks of such things would already know they are | susceptible. | | There is no known mechanism for any risk that would not | manifest within the first day or two. | petra wrote: | There is a YC company that has a technology to guide small | molecules to cancer cells. | | Might be able to guide mRNA too. | jdoliner wrote: | That would be Shasqi! | | https://www.shasqi.com/ | nextos wrote: | I think RNAs are great as a cell therapy. Not necessarily | mRNAs, but other ncRNAs which can be used to silence enhancers. | This would be great for many diseases. | | mRNAs are great as a vaccine to trigger an anti-cancer | response, combined with checkpoint inhibitors. The big | challenge is to choose a good personalized mix of peptides | (encoded as mRNAs) in a way that scales to thousands of | patients. | crb002 wrote: | Yes, especially in an insulin pump so you can do time release. | | This is now industrialized. Print the mRNA, slap it in lipids, | inject. https://www.idtdna.com/ ___________________________________________________________________ (page generated 2020-12-18 23:00 UTC)