[HN Gopher] mRNA's next challenge: Will it work as a drug?
       ___________________________________________________________________
        
       mRNA's next challenge: Will it work as a drug?
        
       Author : mudil
       Score  : 137 points
       Date   : 2020-12-18 18:08 UTC (4 hours ago)
        
 (HTM) web link (science.sciencemag.org)
 (TXT) w3m dump (science.sciencemag.org)
        
       | napier wrote:
       | Paywalled for me. Perhaps someone could fix that?
        
         | knicholes wrote:
         | You could fix it by paying! :D
        
           | cinntaile wrote:
           | It seems to cost $15. Which is a bit excessive for what's
           | essentially a news article. News articles hardly have any
           | worth on its own nowadays.
        
         | Wowfunhappy wrote:
         | Because the parent appears to have been downvoted (as of this
         | writing), I'd just like to point out that according to the site
         | FAQ, their question is perfectly acceptable on HN.
         | 
         | > _It 's ok to post stories from sites with paywalls that have
         | workarounds. In comments, it's ok to ask how to read an article
         | and to help other users do so. But please don't post complaints
         | about paywalls. Those are off topic._
         | 
         | https://news.ycombinator.com/newsfaq.html
         | 
         | https://news.ycombinator.com/item?id=10178989
        
       | macrolime wrote:
       | Link to full article
       | 
       | https://sci-hub.se/downloads/2020-12-18/44/10.1126@science.3...
        
         | neonate wrote:
         | https://archive.is/h7MNM also works.
        
           | dzhiurgis wrote:
           | Does not for privacy respecting dns users
        
             | dsissitka wrote:
             | Or Brave users, or... did they ever unblock Finland?
             | 
             | https://en.wikipedia.org/wiki/Archive.today#Finland
        
             | LordDragonfang wrote:
             | I'm wondering what a "privacy respecting" dns could
             | possibly have to do with breaking a web archival service.
             | 
             | edit: huh
             | 
             | https://www.reddit.com/r/pihole/comments/ao51ko/problem_wit
             | h...
             | 
             | https://news.ycombinator.com/item?id=19828702
        
             | colejohnson66 wrote:
             | If web.archive.org was used, it would work. Why do people
             | prefer archive.is? The Internet Archive is more established
             | and less likely to disappear.
        
               | neonate wrote:
               | In this case it doesn't have the article.
        
               | colejohnson66 wrote:
               | web.archive.org/save/{URL} works
        
         | napier wrote:
         | Thanks!
        
         | witweb wrote:
         | God bless Sci-Hub. Thanks for linking the full article.
        
           | dmix wrote:
           | Donate to Sci-Hub:
           | 
           | https://sci-hub.tech/donation/
           | 
           | They accomplished one of Aaron Schwartz's dreams.
        
             | elektor wrote:
             | Is this the legit link to Sci-Hub? I'm a little surprised
             | to see Paypal allow donations.
        
         | msla wrote:
         | https://web.archive.org/web/20201218214338/https://sci-hub.s...
        
         | wildbunny wrote:
         | It's gone down
        
           | CaliforniaKarl wrote:
           | It's up for me. You may be in an area, or using an ISP, that
           | is blocking access to that domain. Unfortunately I don't have
           | any info to hand on alternate access methods, but I know they
           | exist.
        
             | h_anna_h wrote:
             | Enabling dns over https usually fixes any censorship by an
             | ISP issues.
        
           | deadalus wrote:
           | https://ipfs.io/ipfs/QmWiWELM9ArjAJvAsSiyZ5jSfjZERir3nGmbySV.
           | ..
        
           | macrolime wrote:
           | If it doesn't work you can try try replacing .se with .st or
           | .do
        
           | ce4 wrote:
           | Works for me, check if sci-hub.se resolves to e.g.
           | 186.2.163.219.
           | 
           | Or just:
           | 
           | curl --resolve sci-hub.se:443:186.2.163.219 --remote-name
           | https://sci-
           | hub.se/downloads/2020-12-18/44/10.1126@science.3...
        
       | hikerclimb wrote:
       | I hope not
        
       | ineedasername wrote:
       | mRNA might not pan out for more general purposes (well,
       | specialized for each use case) but it seems kind of crazy that
       | the most significant pandemic, social upheaval, and economic
       | crisis the world has known in 100 years could also lead to some
       | of the most significant advances in medical science & therefore
       | quality of & length of life as well.
       | 
       | I'm not trying to downplay the health issues or impact of COVID,
       | just saying that it has the potential for one heck of a silver
       | lining. Not least of which is that even if other mRNA uses aren't
       | forthcoming, we're incredibly more prepared to fight another
       | pandemic, especially other Corona strains, that could be more
       | harmful.
        
         | maxerickson wrote:
         | The technology has been in development for decades, so in that
         | sense is a response to the pandemic, but it's not a result of
         | the pandemic.
         | 
         | (the first SARS certainly encouraged vaccine research)
        
       | avancemos wrote:
       | The question is, how did this start just now? In 2020? How is the
       | COVID-19 vaccine the first to use mRNA? Anyone with who has taken
       | AP Biology could conceive of and understand the idea behind
       | making vaccines rapidly: take some mRNA, inject it, have in
       | translated as the antigen in the body. Poof, that's it. I feel
       | like the development of mRNA drugs should have started in the
       | 70's or 80's. It isn't exactly high-tech or clever.
        
         | dragonwriter wrote:
         | > Anyone with who has taken AP Biology could conceive of and
         | understand the idea behind making vaccines rapidly: take some
         | mRNA, inject it, have in translated as the antigen in the body.
         | 
         | There was quite a lot of development on basic techniques of
         | working with RNA necessary before that could even in isolated
         | circumstances be easier than, or even competitive with,
         | "isolate the antigen, inject it, done".
         | 
         | > The question is, how did this start just now?
         | 
         | It didn't.
         | 
         | Getting a treatment to market isn't the _start_ of application
         | of a new technique in medicine; its usually something that
         | happens many years, often decades, into work using the
         | technique.
        
         | iskander wrote:
         | >take[1] some mRNA[2], inject it [3], have in translated as the
         | antigen in the body[4]. Poof, that's it.
         | 
         | 1) Develop synthesis technique for large scale high purity mRNA
         | without base errors or truncations.
         | 
         | 2) Discover pseudouridine modification to decrease innate
         | immune response.
         | 
         | 3) Discover and optimize lipid nanoparticles for encapsulation
         | of mRNA to prevent its degradation.
         | 
         | 4) Optimize LNPs and miRNA sites in UTRs for localization to
         | desired cell type and to prevent aggregation in undesired or
         | dangerous cells/organs.
         | 
         | Poof, that's it!
        
         | inglor_cz wrote:
         | "Poof, that's it."
         | 
         | The immune system is incredibly dangerous to its own host if
         | mishandled. By stimulating response, you are trying to light a
         | cigarette using a white phosphorus flamethrower, so to say.
         | 
         | It took a lot of time to find the optimal way of mRNA delivery
         | that a) really does something but b) does not provoke a
         | massive, counterproductive response. This is a very narrow
         | rocky ledge with precipices on both sides to walk.
        
         | kennywinker wrote:
         | > it isn't exactly high-tech or clever
         | 
         | Read the history section of the rna vaccine wiki:
         | https://en.m.wikipedia.org/wiki/RNA_vaccine
         | 
         | You're right, we've understood that this could be done for a
         | long time. Not quite the 70s, but.. at least the 90s. But
         | believing something is possible and knowing how to do it are
         | different:
         | 
         | 1989 - injected rna maybe goes into cells
         | 
         | 1990 - proof injected rna creates proteins
         | 
         | 1994 - proof injected rna creates immune responses
         | 
         | Then:
         | 
         | "2005 they published a joint paper that solved one of the key
         | technical barriers by using modified nucleosides to get mRNA
         | inside human cells without setting off the body's defense
         | system"
         | 
         | That kicked off a ton of research, but:
         | 
         | "Up until 2020, these mRNA biotech companies had poor results
         | testing mRNA drugs for cardiovascular, metabolic and renal
         | diseases; selected targets for cancer; and rare diseases like
         | Crigler-Najjar syndrome"
         | 
         | But why did they spend from 2005 to 2020 working on mRNA drugs
         | and not vaccines? Capitalism. Vaccines are not generally
         | profitable (take once, you're done) - so vaccines are not an
         | appealing target for a startup with investors wanting big
         | returns. (Source: https://www.statnews.com/2017/01/10/moderna-
         | trouble-mrna/)
        
           | denimnerd42 wrote:
           | Yeah seems like vaccine development only started after the
           | high profit objectives suffered failure. That doesn't mean we
           | can't go back to working on those objectives in the future
           | but they needed SOMETHING that would work to show mrna
           | promise. Vaccines you only have to take once or twice so the
           | side effects of immune response aren't too bad and you have
           | an immune response to a vaccine anyways.
        
             | kennywinker wrote:
             | Even for the staunchest capitalist, covid has clearly
             | outlined that we need medical research that is separated
             | from market forces. After sars 1 was controlled, research
             | in this area was all but dropped - despite virologists
             | warning that it was just a matter of time before... well,
             | this.
             | 
             | Medical research needs to be driven by what can help
             | people, not by what can make the most money.
        
               | denimnerd42 wrote:
               | PPE too. We still don't have N95s for the public or in
               | some areas even the medical professionals.
               | 
               | If we had a different administration in the USA we may
               | have been able to conquer that quickly with sheer cash
               | and coordination since the knowledge how to build melt
               | blown N95 machines is there. For whatever reason we just
               | didn't.
        
           | [deleted]
        
         | [deleted]
        
         | fintler wrote:
         | It did start in the 70s!
         | 
         | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC433302/
        
           | CharlesW wrote:
           | Another easily-searchable fact is that the COVID-19 vaccine
           | is not the first RNA-mechanism drug.
        
         | [deleted]
        
         | jfarlow wrote:
         | Delivery of the RNA is hard. To the right cell type, not
         | immediately degraded, not accidentally integrated into a
         | critical part of the genome, with a payload that is actually
         | effective, etc.
         | 
         | The original gene therapies (early 2000s) were essentially RNA
         | therapies (adenovirus). And their unethical rush and subsequent
         | failures caused a bit of a 'gene therapy winter' [1]. We've
         | since made enormous progress on both the ability to safely
         | deliver genes, but also our ability to generate/design new
         | useful genes.
         | 
         | [1] https://www.labiotech.eu/in-depth/gene-therapy-history/
         | 
         | > In 1972, a paper titled 'Gene therapy for human genetic
         | disease?' was published in Science by US scientists Theodore
         | Friedmann and Richard Roblin, who outlined the immense
         | potential of incorporating DNA sequences into patients' cells
         | for treating people with genetic disorders. However, they urged
         | caution in the development of the technology, pointing out
         | several key bottlenecks in scientific understanding that still
         | needed to be addressed.
        
           | armada651 wrote:
           | Can we please not spread the misinformation that mRNA can
           | somehow integrate into the genome? It feeds crazy conspiracy
           | theories around the vaccines.
        
             | jart wrote:
             | The parent was probably confusing RNA with adenovirus which
             | IIUC _does_ deliver DNA that integrates itself into the
             | genome. There are dozens of COVID vaccines under
             | development right. Many of them are in fact DNA vaccines.
             | To date they 've only been approved for vaccinating dogs of
             | rabies. The mRNA vaccines that companies like Pfizer are
             | making have the advantage of not permanently changing the
             | DNA in the target cells. Even with DNA vaccine it's not the
             | end of the world. For example, herpes simplex (cold sores)
             | is an example of a natural virus that integrates itself in
             | the DNA. But it's localized and it's not something that
             | your children are going to inherit. Another interesting
             | fact is that the Pfizer mRNA vaccine and others are
             | delivered using lipid nanobots rather than adenovirus which
             | I think is cool. But DNA vaccines have even potentially
             | cooler applications since it means the medical field might
             | for once be able to offer cures to illnesses, rather than
             | charging you for a pill every day.
        
           | usrusr wrote:
           | "incorporating DNA sequences into patients' cells" is a
           | wildly more dramatic approach than temporarily tricking a
           | number of cells into manufacturing some protein with mRNA.
           | It's almost like the difference between getting the browser
           | to run your page's js vs a full remote code execution
           | vulnerability.
        
           | postalrat wrote:
           | How can you say we made enormous progress when it appears
           | this is still an untested therapy.
        
             | jfarlow wrote:
             | The number of [nucleic-acid-delivered] gene therapies in
             | Phase II & Phase III trials right now is huge - because of
             | this progress in delivery [of nucleic acids]. Gene
             | therapies for the eye, for hemophilia, for sickle cell,
             | many many cancer therapies all rely on the ability to
             | 'deliver' nucleic acid payloads to cells. Of those, only 3
             | or 4 have been approved - and all in the past 2 years, but
             | there are a huge number that are behind that tip of the
             | iceberg - quite precisely because it's relatively
             | straightforward to do 'same thing but with a different
             | sequence' once the first one works.
        
           | johntb86 wrote:
           | Wouldn't an adenovirus be delivering DNA? mRNA can't be
           | incorporated into the genome (barring some crazy mixing due
           | to a retrovirus) because it's RNA.
        
             | flobosg wrote:
             | mRNA is not the only type of RNA that can be delivered.
             | Another type could be interfering RNA targeting endogenous
             | coding or non-coding RNA molecules.
        
           | [deleted]
        
         | c54 wrote:
         | I think the theory behind it is straightforward enough (and
         | indeed, Moderna was founded 10 years ago with this sort of mRNA
         | vaccine as their explicit goal), but the practice is more
         | complicated.
         | 
         | Figuring out what sequence of mRNA will be the right one to get
         | a cell to produce the right antibodies for the job, getting
         | that sequence sliced out of the viral RNA, getting that all
         | into a form where it can be absorbed by cells and not just
         | instantly degrade are all nontrivial tasks.
         | 
         | The devil's in the details: compare to the field of software or
         | cpu engineering... seems straightforward enough to just have
         | more instruction decoders, but due to complexities only
         | ditching x86 has actually made it possible for Apple to do
         | this.
        
         | iscrewyou wrote:
         | It's not new. Work had been happening on mRNA. But the vaccine,
         | I assume, is humans working under pressure and finally making
         | it happen.
         | 
         | I found this video (from 2013) in the other thread today about
         | the vaccine Moderna Vaccine taking two days to make:
         | https://news.ycombinator.com/item?id=25468959
        
         | LetThereBeLight wrote:
         | The technology for synthesizing large quantities of specific
         | RNA sequences has only been available recently. Same goes for
         | forming the lipid nanoparticles that are used for encapsulating
         | and delivering the mRNA. In fact if anyone has more detailed
         | information on how these two processes are done I would love to
         | learn more.
        
           | rolph wrote:
           | PCR, the Polymerase Chain Reation.
           | 
           | https://en.wikipedia.org/wiki/Polymerase_chain_reaction
           | 
           | the emphasis in the wiki article is on DNA, the same basic
           | principles apply with RNA.
           | 
           | for example you can start with RNA and use reverse
           | trancriptase to produce a DNA sequence, amplify that sequence
           | to a large copy number by repeatedly replicating it then
           | transcribe the DNA to produce large quantities of RNA.
           | 
           | or you can start with the DNA [in large quantities of purity]
           | then create many copies of the RNA by repeatedly transcribing
           | the DNA.
           | 
           | The practice of artificial [in vitro] gene synthesis can
           | create arbitrary sequences for input to the process[es].
           | 
           | https://en.wikipedia.org/wiki/Artificial_gene_synthesis
           | 
           | liposomes are manufactured via biochemical-mechanical
           | process.
           | 
           | https://en.wikipedia.org/wiki/Liposome#Manufacturing
        
         | vlovich123 wrote:
         | Given that Moderna is the first ever company to bring such a
         | vaccine to market and they've been working on mRNA for the past
         | 10 years, I imagine there's a lot of technical complexity to
         | actually deliver a therapy and then mass produce it beyond just
         | the basic concept.
         | 
         | Reading how Pfizer and Moderna worked on it together, they
         | needed detailed gene sequencing to understand how to design a
         | potential vaccine. Even then they were left with a lot of
         | potential options they still had to whittle down. Finally even
         | with all that work they're left with a vaccine with complex
         | storage requirements.
         | 
         | So it's entirely possible that we just didn't have the
         | surrounding technical ability even if theoretically it was
         | possible. The gene sequencing to sequence it quickly and share
         | that across the entire world, the compute needed to do try
         | different experiments at scale, the manufacturing capabilities,
         | Moderna having invested in the space for the preceding 10
         | years, existing experience with developing a SARS vaccine, etc.
        
           | Narretz wrote:
           | I think you mean BioNTech not Moderna.
        
           | maxerickson wrote:
           | Pfizer worked with BioNTech, not Moderna.
           | 
           | Moderna's vaccine is a great deal easier to store than the
           | BioNTech/Pfizer vaccine (requires 'normal' freezers for
           | storage, can be at refrigerator temperatures for a longer
           | period).
        
             | denimnerd42 wrote:
             | BioNTech and Moderna both have links to Katalin Kariko so
             | while they didn't explicitly work together on this the
             | knowledge comes from similar research and sources.
        
       | vlovich123 wrote:
       | Why is that the next challenge? Why aren't we using this on other
       | diseases we haven't been able to generate vaccines for and just
       | continue to research it as a general therapy since that's not yet
       | an "engineering" problem?
       | 
       | HIV, Ebola certain cancers, etc. What about using it to train our
       | immune system for more complex diseases like Malaria or various
       | bacteria? What about investigating if the general techniques can
       | also somehow combat simpler diseases like prions which don't even
       | have RNA.
        
         | sradman wrote:
         | Good question. The article says:
         | 
         | > These drugs face the challenges of targeting mRNA to specific
         | tissues and giving strong, lasting benefits without excessive
         | side effects.
         | 
         | This innovation reminds me of Virginia Postrel's book _The
         | Fabric of Civilization_ : _How Textiles Made the World_ [1].
         | Postrel describes several key technological innovations that
         | propelled the manufacture of cloth from fiber farming to thread
         | weaving to cloth weaving to cloth dying /decorating to
         | distribution. Each innovation moved the bottleneck to a
         | different layer in the value chain.
         | 
         | The mRNA platforms are ideal for vaccines but ultimately, the
         | downstream safety/efficacy trials are the new bottleneck. There
         | was a time when futurists obsessed about nanobots but these
         | mRNA platforms are the ultimate nanobots, in my opinion. They
         | can be configured to program biological cells to manufacture
         | simple proteins in situ. This is a very powerful tool, but like
         | the historical innovations in spinning and weaving, the
         | technology can produced many orders of magnitude more
         | potentially useful outputs than the rest of the value chain can
         | use effectively (for now).
         | 
         | [1] https://www.basicbooks.com/titles/virginia-postrel/the-
         | fabri...
        
         | newacct583 wrote:
         | Ebola, Malaria and HPV have working vaccines already, there's
         | no particular need for new technology there. HIV would be
         | interesting though.
         | 
         | And bacteria aren't in general limited by immune response. The
         | immune system has zero difficulty detecting a bacterial
         | infection, but it happens at a wildly different scale and can't
         | be fought with a fundamentally chemical means like our bodies
         | do with virii.
         | 
         | And the point about prions seems to misunderstand this
         | technique. The way an mRNA vaccine works is by transmitting
         | _blueprints_ for a viral protein (but not the rest of the
         | virus) into the body 's cells, where ribosomes then synthesize
         | the disembodied proteins, which get detected as "foreign
         | invaders" and produce a lasting immune response which would
         | then be effective against the real virus.
         | 
         | Prions, remember, are just misfolded versions of your body's
         | own proteins. They have the same sequence of amino acids as
         | "correct" proteins and just an incorrect shape. mRNA only
         | transmits the sequence, not the shape. And in any case your
         | cell's DNA already _has_ the sequence encoded, because you 're
         | not dead.
        
           | raducu wrote:
           | Isn't HIV a special case though?
           | 
           | The reason we don't have an HIV vaccine is because HIV
           | embedds itself in the DNA of some cells and some of those
           | cells don't start producing virions right away, the immune
           | system can't detect them, you clear the visible infection,
           | but just weeks after, those hidden cells start producing the
           | virus and the infection starts over. So the issue with HIV is
           | the hidden reservoir of infected cells, afik.
        
           | fabian2k wrote:
           | The mRNA vaccines do also transmit the shape, as the encoded
           | viral protein does get expressed in the cells. And the shape
           | does get recognized by the immune system when that protein is
           | secreted from the cell. But there is also a shape-independent
           | mechanism that works on the sequence alone. The proteins in a
           | cell are also chopped into tiny pieces and presentend on the
           | surface. That part could not distinguish between different
           | folded versions of the same protein like with prions.
        
             | vlovich123 wrote:
             | I think I was misunderstood a bit. I wasn't proposing that
             | mRNA in its current state (or even solely by itself) would
             | somehow be able to cure prion diseases.
             | 
             | I was thinking more that research into biotech generally
             | improves our knowledge. I don't know biology at all but I
             | figured some evolution of technologies associated with
             | CRISPR + mRNA + other things would be useful as a team in
             | solving prion diseases. So maybe mRNA can become efficient
             | enough that it's used to train the immune system to target
             | the misfolded proteins themselves to try to limit damage
             | while the treatment is ongoing. Futuristic now certainly,
             | but is it definitely 100% impossible ever even as our
             | knowledge & tech improves? Or maybe mRNA can exploit
             | something in the prion process we don't yet understand.
             | Maybe CRISPR could be part of the overall treatment therapy
             | as you inoculate more of the body from whatever is
             | propagating the bad code through your body which could be a
             | time-consuming process (think vaccine at the genetic level
             | - you potentially need to get it to every cell in the
             | body).
             | 
             | Obviously this is all sci-fi stuff & some of it impossible
             | & out there. I still like to imagine sci-fi is useful as
             | potential roadmaps to brainstorm how we might solve
             | impossible problems - even if we miss, we'll land somewhere
             | useful.
        
           | flobosg wrote:
           | > They have the same sequence of amino acids as "correct"
           | proteins and just an incorrect shape.
           | 
           | Somatic mutations can trigger the misfolding as well.
        
           | jcims wrote:
           | Do prions typically occur because of a defect in the RNA or
           | are there just certain protein structures that have
           | instability in how they fold?
        
             | kens wrote:
             | Prions can happen multiple ways. In familial (i.e.
             | hereditary) CJD, a mutation in the PRNP gene (DNA) creates
             | an abnormal misfolded protein, i.e. prion. In sporadic CJD,
             | it's basically bad luck that the protein gets folded wrong.
             | In acquired CJD, exposure to brain tissue with the prion
             | protein causes it. Once there's a prion, it causes more of
             | the protein to misfold, creating more prions and causing
             | the disease.
        
             | strbean wrote:
             | In my understanding, a defect in the RNA that affected the
             | protein would necessarily result in a different amino acid
             | sequence. So for prions to form, they would have to be
             | misfolded initially due to chance / environment or re-
             | arranged afterwards through some process. The best known
             | protein to form prions (PrP, Prion Protein) is known to
             | convert from the well-folded form to a misfolded form upon
             | interacting with the misfolded form, which could indicate
             | that spontaneous formation of prions is due to interaction
             | with something after the initial folding. I think this
             | could also just be an indication that PrP just has lots of
             | very close low-energy states, which would mean a higher
             | chance of misfolding initially.
             | 
             | - Mostly lay person view (some bioinformatics experience)
        
               | [deleted]
        
             | type0 wrote:
             | because the prions are chaperones, i.e they can fold other
             | proteins
        
               | jcims wrote:
               | That's how they turn your brain into Swiss cheese right?
               | I'm just wondering how they are formed, are they
               | misfolded normal proteins or just alien like virii.
        
               | bbojan wrote:
               | They are misfolded body's normal proteins, with a nasty
               | side effect that they cause the normally folded copies of
               | the same protein to also misfold in the same way. The
               | result is a chain reaction of sorts.
        
           | rzwitserloot wrote:
           | nitpick: virii is wrong.
           | 
           | The latin plural of 'virus' does not exist. It is a nebulous,
           | uncountable concept to ancient rome. Like 'malaise' or
           | 'ocean' (we can pluralize oceans in english, but hopefully
           | you can imagine that a language would treat it as a concept
           | for which the concept of pluralization doesn't make sense).
           | 
           | You'd think: Hey, it's `-us`, I know that one, it pluralizes
           | to `-i`, but, no. There is no plural. It's a rare form that
           | also ends in -us but doesn't work like most of the words you
           | know derived from latin that end in -us.
           | 
           | But there is `vir`, latin for 'man', and the plural of that
           | is viri.
           | 
           | So, 'viri', as in 'the latin pluralized form of virus', is
           | dead wrong.
           | 
           | There is no -ii ending in latin. At all.
           | 
           | The plural of 'virus' in english is 'viruses'. Any other form
           | is stupid. Sometimes language does that, but surely you'd
           | agree that something like 'irregardless', whilst somewhat
           | common, sounds very unprofessional. virii is the same way.
        
             | newacct583 wrote:
             | Now _that_ is an HN comment.
        
             | admash wrote:
             | > There is no -ii ending in latin. At all.
             | 
             | Should you mean no -ii ending to "virus" at all, it would
             | appear to be a reasonable assertion. However if by "at
             | all", you mean of any word in Latin, that is demonstrably
             | false.
             | 
             | http://latindictionary.wikidot.com/noun:filius
             | 
             | Nominative and vocative plural: filii
             | 
             | Usage example:
             | 
             | "... et nihilo minus amicum gravem virum aut fidelem
             | libertum lateri filii sui adiungere, ..."
             | 
             | https://thelatinlibrary.com/quintilian/quintilian.instituti
             | o...
        
             | ink_13 wrote:
             | I'll bet you 10 denarii you're wrong about suffixes.
        
             | anonymfus wrote:
             | But that comment was written in English, not Latin, and
             | such irregular pluralisation is better to be treated as a
             | feature of the modern English. People generally do this not
             | because they someway learned Latin incorrectly but because
             | they noticed how other English speakers pluralise Latin
             | looking words, and that is exactly how new grammar rules
             | are adopted.
             | 
             | Also by referring to ancient Rome you treat Latin as some
             | sort of a fixed, dead language, but English speakers do
             | that irregular pluralisation to words borrowed from the
             | modern languages descented from Latin too (see _cappuccini_
             | ), and so for example in Romanian plural of _virus_ is
             | _virusuri_ , and in Neo-Latin it's _vira_. Personally I
             | want to prefer _virusuri_ just because it 's the funniest
             | one.
        
             | thereisnospork wrote:
             | > There is no -ii ending in latin. At all.
             | 
             | Triarii?
             | 
             | (My knowledge of latin as a language comes primarily from
             | Rome Total War).
        
       | blakesmith wrote:
       | I've been a little out of the loop on how COVID vaccines were
       | different than others. In case you're like me, here's a nice
       | primer on "mRNA vaccines":
       | https://www.cdc.gov/coronavirus/2019-ncov/vaccines/different...
        
         | shiny wrote:
         | I liked this guy's explanation:
         | https://www.youtube.com/watch?t=1313&v=wb_0FB7XiqA
         | 
         | My main questions after watching: how long do the spike
         | proteins attach to our cell membranes? Do they get cleaned up
         | eventually?
         | 
         | Also, will it lead to damage to the cell in anyway?
        
       | stanford_labrat wrote:
       | There is a YC company who are currently using mRNA based drugs
       | for telomere extension.
        
         | jart wrote:
         | My Google fu is failing me. What company is that? Sounds like
         | Elysium.
        
           | stanford_labrat wrote:
           | Rejuvenation Tech! (S18)
        
       | _greim_ wrote:
       | Okay, layman's speculation: Given we can co-opt cells to
       | manufacture proteins for us like this, and given we can predict
       | what shape of protein an mRNA strand would produce, does this
       | open up all sorts of potential in medical treatments? Tear it
       | apart, HN.
        
         | flobosg wrote:
         | > given we can predict what shape of protein an mRNA strand
         | would produce
         | 
         | For therapeutic proteins you usually work the other way around:
         | You design the shape and try to get a sequence that folds as
         | intended. In other words, the inverse folding problem.
        
           | [deleted]
        
           | elcritch wrote:
           | The parent is referring to the recent DeepFold success in
           | predicting protein shapes from DNA/RNA, which means it
           | appears to have solved the inverse folding problem for many
           | proteins (modulo more exotic protein "features"). I haven't
           | read the article (yet), but presumably being able to go from
           | desired protein shape to plausible nucleotide sequences to
           | mRNA to produce them would enable a lot of drugs to be
           | developed that were cost/resource prohibitive previously.
           | Presuming you can get access to DeepFold and the compute time
           | to run it on semi-random sequences until you get matching
           | shapes.
        
         | kens wrote:
         | I'm not sure I understand the question, as that's the point of
         | the article. Clinical trials are currently testing mRNA to
         | produce proteins to treat cystic fibrosis, heart failure and
         | various obscure conditions. There are various problems, such as
         | ensuring the the protein is created in the right cells,
         | requiring repeated doses so the protein is created over a long
         | time, handling side effects, and increasing the amount of
         | protein created. So mRNA isn't an easy solution.
        
         | arrosenberg wrote:
         | Yeah, that's basically what the article discusses. It will be
         | easier for non-targeted treatments that can circulate the whole
         | body. This tech (by itself) doesn't really solve the issue of
         | delivering site-specific medication.
        
         | tboyd47 wrote:
         | On face value, it sounds less risky than the standard vaccine
         | development route, which may involve introducing immortalized
         | (i.e. cancerous) cells or artificially stimulating an immune
         | response with known toxins (adjuvants).
         | 
         | I still have questions about the mRNA vaccine concept. Maybe
         | some well-informed HNer can shed light?
         | 
         | 1. If the goal is to get the desired protein inside the
         | patient's body, why is injecting mRNA that produces the protein
         | more effective than simply introducing the protein itself?
         | 
         | 2. How does the patient's immune system know to treat this
         | protein as unwanted if it's being produced by the body's own
         | cells?
         | 
         | 3. How do vaccine developers avoid creating an over-active
         | immune response in the patient (i.e. an allergy)?
        
           | therein wrote:
           | I have been asking the very same questions, especially the
           | (2).
           | 
           | So far, nobody has been able to provide a satisfying answer.
        
             | rolph wrote:
             | there is a system homologous to machine learning 2factor
             | authentication.
             | 
             | in very loose terms both keys must be presented while the
             | immune system is in training, the instances where protiens
             | are expressed with out cell surface recognition molecules
             | in proximity are invalid thus foriegn, and memory immunity
             | to this "failed login" is maintained. when both factors
             | [protien plus recognition] are present constituitively over
             | the course of development the immune response is squelched.
             | 
             | this is known as central tolerance.
             | 
             | https://en.wikipedia.org/wiki/Central_tolerance
        
             | fabian2k wrote:
             | The simplistic answer is that the immune system tries out
             | new antigen-detecting cells in a safe environment before
             | letting them run around with a loaded gun. Any cell that
             | activates in that safe environment is destroyed, as it
             | recognized one of your own antigens.
             | 
             | The other mechanism is that the immune system doesn't react
             | only to foreign antigens, there also needs to be some
             | general activation of the immune system in that area for a
             | real response.
             | 
             | The full answer is that this is really, really complex like
             | pretty much everything involving the immune system. And
             | auto-immune diseases indicate that the immune system
             | doesn't always get this right.
        
               | tboyd47 wrote:
               | How is that general activation achieved in the case of
               | this mRNA vaccine and the others that will surely follow?
        
               | fabian2k wrote:
               | RNA itself is suspicious because it's a major component
               | of many viruses. So some kinds of RNA will activate the
               | innate immune system strongly.
        
               | tboyd47 wrote:
               | That's really interesting and confirmed with some light
               | searching. Thanks!
        
           | BurningFrog wrote:
           | > _2. How does the patient 's immune system know to treat
           | this protein as unwanted if it's being produced by the body's
           | own cells_
           | 
           | The immune system can't know who produced a certain molecule.
        
           | gostsamo wrote:
           | 1. A single rna can produce multiple times the protein,
           | because it is like the proverb about giving someone fish and
           | teaching them fishing.
           | 
           | 2. Someone already said, but a protein has no marker saying
           | "local produce". It is either allowed or not and the body
           | reacts or not when detecting it.
           | 
           | 3. They hope. Measure the dosage and adjust. As it was
           | reported, some people getting the vaccine have an allergic
           | reaction, but hopefully it will be rare and under control. So
           | far there are only a few cases reported.
        
             | [deleted]
        
           | fabian2k wrote:
           | Adjuvants are not toxic, they're simply known to enhance the
           | immune system response (so they are something that indicates
           | danger to the immune system). The immune system is incredibly
           | dangerous and destructive, and you really don't want to
           | trigger it without reason. So injecting something unknown
           | might not be enough to get the immune system fully alarmed,
           | that's why some vaccines add adjuvants to produce a stronger
           | response. RNA can be an adjuvant by itself, as it's also a
           | typical component of viruses and the immune system reacts to
           | that.
           | 
           | So the trick really is to design the RNA and the delivery
           | system so that it produces an immune response of the right
           | magnitude. Too weak and it doesn't work, too strong and it's
           | harmful.
           | 
           | Antibodies that bind to your own proteins are filtered in an
           | earlier stage in antibody production. Real viral proteins are
           | also produced by your own cells, so that is never a factor by
           | which you could distinguish friend from foe.
        
           | raducu wrote:
           | 1. I guess for smaller batches it is easier to develop the
           | mRNA. Otherwise, we would have monoclonal antibodies and not
           | a vaccine(the vaccine has other benefits, it trains the
           | T-cells and the B cells remain dormant even after no
           | abtibodies are detected in the blood).
           | 
           | 2. The imune system knows all your protein already, t cells
           | are evolved in the thymus gland, if they attack anything
           | "self", they get destriyed.
        
           | gus_massa wrote:
           | > _which may involve introducing immortalized (i.e.
           | cancerous) cells_
           | 
           | Which one? I don't remember any vaccine that injects
           | immortalized cells.
        
             | tboyd47 wrote:
             | Feel free to correct if I'm misinterpreting: https://en.wik
             | ipedia.org/wiki/Use_of_fetal_tissue_in_vaccine...
        
               | rolph wrote:
               | the vaccine doesnt contain fetal cells, in the case you
               | are providing the vaccine is an attenuated virus
               | approach.
               | 
               | the cells are used to manufacture quantities of the virus
               | in an extremely weakened form. This gives a chance for
               | the immune systemto mount a response before the pathogen
               | initiates systemic disease response.
               | 
               | the cells in question are not freshly harvested from a
               | foetus, the progenitor cells are harvested and kept in
               | continual culture for use. the reason immortalized cells
               | are used is to escape the "expiry date" of a normal cell.
               | 
               | >>Some vaccines currently available were developed using
               | cell strains cultured from two fetuses aborted for other
               | purposes in the 1960s.[6]<<
               | 
               | i lifted this link from the wiki page provided:
               | 
               | https://en.wikipedia.org/wiki/Immortalised_cell_line
        
               | tboyd47 wrote:
               | Thanks.
        
         | theophrastus wrote:
         | A layman's speculation followed by a layman's (at least in
         | terms of immunology) question: introduce a novel mRNA, cells
         | produce novel protein, it is presented to the immune system as
         | something to foment a defense again: vaccine. But the article
         | talks about using this mechanism to replace a functional copy
         | of a genetically missing enzyme. How is it assured that this
         | will assume the opposite goal and not become another target for
         | the immune system to guard against?
        
         | strbean wrote:
         | Seems to be working well so far for COVID vaccines. We're about
         | to witness a very large scale test though.
        
         | ryanianian wrote:
         | On the opposite side: how do we effectively convince people
         | this new type of vaccine is safe long-term? I'm not a biology
         | person, so I trust the biology people when they say it's safe,
         | but many don't.
         | 
         | My intuition is that many cancers can start when proteins are
         | mis-copied, and mRNA therapy seems to rely on copying to work
         | very reliably. Does introduced mRNA increase the risk or
         | impacts of mis-copying?
         | 
         | Is there an ELI5 intuition for why mRNA therapy is safe and
         | won't lead to cells becoming cancerous?
        
           | raducu wrote:
           | I don't think mRNA spreads from cell to cell, the mRNA enters
           | a limited number of cells and those cells start producing
           | certain proteins the mRNA tells them to.
        
           | sveiss wrote:
           | I'll state upfront that I'm not a biologist, but here's my
           | attempt at the explanation.
           | 
           | The ELI5 version:
           | 
           | Think of the cell as a factory for proteins. The blueprints
           | for all of the different kinds of proteins it can produce are
           | encoded in DNA and stored in the foreman's office. When the
           | cell wants to make a particular protein, the foreman copies
           | the instructions from the blueprint onto slips of paper
           | (mRNA), and sends them to the assembly line workers. This
           | type of copying happens all the time, and is pretty reliable
           | -- and even if it's not, the end result is just some wasted
           | time and a junk part. The blueprints are unaffected. mRNA
           | vaccines sneak some unauthorized instructions to the workers,
           | who then run a ghost shift to produce the protein we want to
           | cause an immune response to.
           | 
           | When we need to create a second factory, we need to photocopy
           | all the blueprints for the new cell. This uses a totally
           | different process (a photocopier assembled specifically for
           | the job of copying whole blueprints onto more blueprint
           | paper, and not the work-order slips sent to the assembly
           | line). The photocopier is pretty reliable too, but
           | occasionally it introduces artifacts, and eventually, enough
           | of these errors can build up to create mistakes in the
           | blueprints. The blueprints have instructions on how to deal
           | with errors in a new factory (by blowing it up), but if
           | enough of those failsafe instructions are obscured by copier
           | artifacts, you now have a potentially cancerous cell.
           | 
           | The foreman's office doesn't usually make changes to the
           | blueprints based on work order slips. It's possible with a
           | special copy machine -- this is how HIV works, by sneaking
           | that machine in -- but without a work order slip to blueprint
           | copier, it doesn't matter how many fake work order slips we
           | pass into the cell. They will only affect the production
           | line, not the foreman's office.
           | 
           | The more detailed, and almost certainly wrong-in-the-details
           | version:
           | 
           | There are three types of encoding for genetic material: in
           | DNA, in RNA, and in proteins.
           | 
           | In order for the information encoded in genetic information
           | to be active in a biological system, it has to be expressed
           | as a protein -- a physical manifestation with binding sites
           | and the ability to interact with other molecules. Ribosomes,
           | a component of the cell, do the "assembly" part of
           | transferring genetic information to a protein. This is called
           | "translation".
           | 
           | DNA is the long-term storage of the information eventually
           | expressed as proteins -- it's a collection of templates in
           | long term storage. So there has to be a process to get
           | information from the long-term storage of DNA, in the nucleus
           | of the cell, to the ribosomes elsewhere in the cell.
           | 
           | Messenger RNA is the intermediary molecule which carries the
           | genetic information from the DNA to the ribosomes. It's
           | produced in the nucleus of the cell by a mechanism called
           | "transcription", which copies a subset of a DNA molecule into
           | a complementary RNA molecule encoding the same information.
           | The DNA double-helix is "unzipped", a complementary RNA
           | strand is assembled, and the double-helix reforms. The mRNA
           | can then be transported to the ribosomes.
           | 
           | mRNA is a useful vaccine mechanism, because we're co-opting a
           | late stage of the cell's protein production pipeline. We
           | don't have to assemble the target protein by hand and figure
           | out how to modify it make it stable for distribution -- a
           | task that would need to be repeated for each protein we
           | wanted to make. Instead, we can figure out how to synthesis
           | mRNA, and we don't need to worry about either synthesis or
           | stability for the end protein product.
           | 
           | When we talk about cancer and mis-copying, this is at a much
           | earlier stage in the pipeline. When a cell splits into two
           | cells through mitosis, we don't want a subset of the protein
           | templates in the cell's genetic material; we want a complete
           | copy. This is a separate biological pipeline, which involves
           | the cell building up a mechanism to do the copying,
           | dissolving the membrane of the nucleus, and ultimately
           | producing and collating copies of all the DNA from the
           | nucleus. This is an entirely separate process, and messenger
           | RNA isn't involved at all.
           | 
           | There is a route for information to travel from RNA back to
           | DNA, and this is the mechanism retroviruses use, and HIV is
           | the most famous example. A complete retrovirus particle
           | includes reverse transcriptase, an enzyme which allows them
           | to transfer information from RNA back to DNA. This is the
           | reverse of the normal DNA -> RNA pattern described above,
           | hence the name _retro_virus. Without that enzyme or something
           | like it, there isn't a pathway to convert RNA back to DNA,
           | and human cells don't normally express an enzyme which has
           | this function.
        
           | delecti wrote:
           | Cancers start when DNA is mis-copied. Typically DNA is copied
           | to RNA, which is then used to generate protein, and there
           | isn't usually a mechanism for that RNA to go back a step to
           | become DNA again. I don't want to say it's impossible, or
           | that there's no conceivable negative effects, but cancer
           | seems like an implausible result from mRNA therapy.
        
             | dharma1 wrote:
             | Not related to mRNA therapy, but retroviruses use reverse
             | transcriptase to attach their RNA to the DNA of the host
             | cell
        
               | delecti wrote:
               | Thank you, that's a good addition. I knew it didn't
               | happen with mRNA, but also knew that there was _a_ route
               | from RNA to DNA, though I couldn't remember what. That's
               | why I hedged my statement with "usually".
        
           | mamon wrote:
           | > how do we effectively convince people this new type of
           | vaccine is safe long-term?
           | 
           | Same as always: do a long-term clinical trial and look for
           | any side effects.
        
         | lucaswoj wrote:
         | This is Moderna's goal https://www.modernatx.com/mrna-
         | technology/mrna-platform-enab...
        
       | localhost wrote:
       | I did some reading on this back when this was all announced, and
       | wrote it down on Twitter. This tweet [1] links to a Nature paper
       | that describes applying mRNA vaccines to cancer. If you scroll
       | up, you'll also see pointers to other papers that I found along
       | the way when I was learning about mRNA vaccines in general.
       | 
       | [1] https://twitter.com/john_lam/status/1333632894720380929
        
       | supernova87a wrote:
       | I would love to know (to assuage any family members' doubts) --
       | 
       | Are there _any_ possible long term side effects of using such an
       | mRNA drug that are yet unanticipated? All the short term side
       | effects are known  / will soon be. Anything beyond that, we
       | haven't had enough experience to know?
        
         | AntiImperialist wrote:
         | > _Are there any possible long term side effects of using such
         | an mRNA drug that are yet unanticipated?_
         | 
         | I'm not sure but I strongly assume yes.
         | 
         | The MAIN reason for this skepticism is that if it was just
         | possible to introduce RNA such that we could have a net
         | positive benefit against coronavirus, a virus that has existed
         | for almost as long as mammals have, we'd have naturally evolved
         | this ability.
         | 
         | The reason we haven't is because it will introduce more
         | problems than it solves down the line.
         | 
         | It could very well be that with a limited understanding of
         | human immune system, we have stumbled upon a solution to a
         | problem that has affected us for millions of years. So, I think
         | some people should try it. But forcing it on the masses is a
         | terrible idea.
        
           | macksd wrote:
           | Look, I'm more willing than most to agree that forcing a
           | medical procedure on the masses is a terrible idea. I'm even
           | more willing than most to agree that not every vaccine will
           | have a sufficient cost/benefit trade off for everyone. I have
           | low-exposure and low-risk to COVID so I'm content to wait a
           | while for the vaccine. I have questions in my mind about how
           | we're so sure that a big shot of mRNA can't somehow cause a
           | risk of birth defects, etc. But...
           | 
           | >> The reason we haven't is because it will introduce more
           | problems than it solves down the line.
           | 
           | This is just not sound reasoning, and it's a terrible
           | argument against the vaccine. Have you ever taken
           | antibiotics? Or have you ever benefited long-term from
           | anything medical that we didn't "evolve" through natural
           | selection? Because I sure as hell have. How does this not
           | apply to other vaccines, which have clearly saved an
           | astonishing number of lives, and have, almost without
           | exception, not produced the kind of long-term existential
           | threats to humanity you seem to be hinting at.
        
           | reissbaker wrote:
           | This take implies that no medicine for deadly diseases can
           | work because otherwise we would have evolved the medicines
           | ourselves.
           | 
           | Also, COVID-19 has not been around "for millions of years."
           | Other coronaviruses, such as the common cold, have. The
           | evolutionary benefits of defense against the common cold are
           | fairly different than benefits against COVID-19. And immunity
           | against one coronavirus doesn't grant immunity against all
           | other coronaviruses.
        
             | throwaway316943 wrote:
             | Two points, the most effective treatments we have for
             | deadly diseases are vaccines which are effective precisely
             | because they rely on our naturally evolved defences.
             | Antibiotics are a runner up but are eventually rendered
             | ineffective by evolution of bacteria they target. Second,
             | Covid-19 is only new to humans, given time it will adapt to
             | us and will likely attenuate.
        
           | majormajor wrote:
           | > The MAIN reason for this skepticism is that if it was just
           | possible to introduce RNA such that we could have a net
           | positive benefit against coronavirus, a virus that has
           | existed for almost as long as mammals have, we'd have
           | naturally evolved this ability.
           | 
           | We'd have naturally evolved the ability to train our immune
           | systems against specific things it hasn't seen before? How
           | would that POSSIBLY work?
           | 
           | The novelty of this particular coronavirus is sort of the
           | problem here, since people don't already have immunity, so
           | your "millions of years" thing is completely off base.
           | 
           | You seem to be arguing against the possibility of a
           | "universal vaccine" for all viruses but that's entirely not
           | what this is. It's very specifically targeted and the idea
           | that we'd evolve the ability to target things specifically
           | _without actually being exposed to them_ in the same way is
           | plainly nonsense.
        
             | blackbear_ wrote:
             | Actually, the ability to respond to never-seen-before
             | threats is the whole purpose of the adaptive immune system
             | [1].
             | 
             | > How would that POSSIBLY work?
             | 
             | Through a process called V(D)J recombination [2].
             | Essentially, every lymphocyte gets a different receptor of
             | random shape, and purely by chance there will be a few
             | lymphocytes with a receptor that matches the shape of the
             | invading viruses (in most cases).
             | 
             | [1] https://en.wikipedia.org/wiki/Adaptive_immune_system
             | 
             | [2] https://en.wikipedia.org/wiki/V(D)J_recombination
        
         | ch4s3 wrote:
         | Probably not. There was about 20yrs of research on using mRNA
         | for gene therapy before the CRISPR/Cas9 discovery. It was
         | abandoned as a route for gene therapy specifically because it
         | wasn't long lasting. The mRNA isn't incorporated into the DNA,
         | so it isn't reproduced by the cells and eventually breaks down.
         | Things inside of cells are flying around at high speeds and
         | constantly colliding, so it's not a very stable environment.
         | 
         | There are people that this was tested on still hanging around
         | with no lasting negative effects (to my knowledge).
        
           | marvin wrote:
           | My partner, a biochemist, has mentioned the potential
           | possibility of RNA viruses causing the RNA of the vaccine to
           | stabilize as some sort of DNA structure. Normally RNA is
           | quickly broken down by RNase, but apparently RNA viruses have
           | a mechanism to defend against this, that it's possible to
           | imagine having an interaction with an RNA vaccine.
           | 
           | I don't know anything about biochemistry, and I'm aware that
           | the above is just remote speculation. It is meant as an
           | example of food for thought. But I do wonder when a whole
           | field of scientists state "there is no possibility of
           | unexpected long-term side effects" to a therapeutic tool that
           | has never been used at anything resembling this scale.
           | 
           | Would love to hear more experts discuss why this is
           | considered sufficiently long-term safe to make the decision
           | of vaccinating a billion people after nine months of testing.
           | Am I missing something, or is it just a question of the
           | precautionary principle in this case being considered too
           | costly?
        
             | jgable wrote:
             | Given that this pandemic has killed millions, shut down the
             | world economy, and caused untold long term damage to
             | children due to lack of stable schooling: yes, it's because
             | the precautionary principle is too costly.
             | 
             | Edit: sorry, my comment may have sounded snarky, which was
             | not my intention. World-wide vaccinations do carry a risk.
             | It's just that such a risk clearly pales in comparison to
             | the very known downsides of the current situation. I am in
             | no way a vaccine expert and cannot comment intelligently on
             | why long-term risks are considered to be low.
        
             | darkerside wrote:
             | There could certainly be a logical error in play here, but
             | considering this is mRNA, and not DNA, it seems like it
             | would be fairly amazing for it to spontaneously form into
             | DNA. Similar to a load of parts spontaneously forming into
             | a bicycle.
             | 
             | That's not to say it isn't possible, but many things are
             | possible but sufficiently unlikely that we take those
             | risks. We eat, drink, and breathe many things every day
             | that we don't fully understand the ingredients or impacts
             | of.
        
             | greedo wrote:
             | Just a slight correction; as I understand it, these
             | vaccines are prophylactic, not therapeutic.
        
             | akiselev wrote:
             | _> Would love to hear more experts discuss why this is
             | considered sufficiently long-term safe to make the decision
             | of vaccinating a billion people after nine months of
             | testing. Am I missing something, or is it just a question
             | of the precautionary principle in this case being
             | considered too costly?_
             | 
             | FDA approvals aren't a black and white affair. Some drugs
             | are approved as orphan drugs through trials designed to be
             | much cheaper than Phase 1-3 trials when they treat diseases
             | that wouldn't be profitable for pharma, for example, and
             | there is a path for preliminary compassionate use approvals
             | and accelerated development for stuff like chemo where the
             | disease is terminal anyway. The FDA works with each company
             | to tailor the process to their needs (although, obviously,
             | they stick to a strict standard unless there's good
             | justification).
             | 
             | Likewise, the vaccine rollout won't be all or nothing. We
             | won't even have a billion doses for a long while and the
             | focus will (likely) be on vaccinating those for whom the
             | benefits outweigh the extra risk like front line medical
             | staff and the immunocompromised or elderly. I don't expect
             | the world to get vaccinated at gun point, although the
             | rules for schools and other institutions will quickly
             | accumulate to cover most of the population.
             | 
             | Personally, I'm not going to be taking the vaccine for a
             | while since no one in my family is at risk and we're
             | (mentally) preparing for several years of varying levels of
             | isolation and other precautions. I have faith in the system
             | for the most part since I've worked on an FDA application
             | before (clinical diagnostics, not therapeutics), but the
             | kind of geopolitical and economic pressure its under right
             | now is unprecedented and should keep epidemiologists up at
             | night (hell, it probably does). It's going to be up to each
             | individual to balance their risks and obligations at least
             | until we get more data.
        
           | MrBuddyCasino wrote:
           | Has there ever been an instance of genetic transformation as
           | a consequence of a mRNA vaccine? Saw this listed as a
           | potential risk in a paper[0], but I have no expertise at all
           | to judge if this a possibility or not.
           | 
           | [0] https://www.mdpi.com/2076-393X/8/2/212/pdf
        
             | blackbear_ wrote:
             | If you are referring to the following sentence in the
             | introduction, I understood it to mean the opposite:
             | 
             | > Moreover, mRNA vaccines induce transient antigen
             | expression, while DNA vaccines provide a long-lasting
             | expression, thus mimicking an acute viral infection.
             | Although a transitory gene expression might be desirable as
             | it minimizes potential risks of genetic transformation,
             | this inevitably affects mRNA potency, thus necessitating a
             | dose increase.
             | 
             | This means that mRNA reduce the risk of genetic
             | transformation compared to DNA vaccines, but it comes as a
             | price because you have to deliver a larger dose of mRNA.
        
         | aazaa wrote:
         | Some clinical work has been done with mRNA vaccines as
         | treatments for other diseases, including cancer. Nothing has
         | made it to Phase 3 yet (other than for Covid-19), but on this
         | page you'll find links to a slew of clinical trials over the
         | years.
         | 
         | https://www.modernatx.com/pipeline/modernas-mrna-clinical-tr...
         | 
         | A handful of studies are currently recruiting for Phase 2, so
         | that means there was a successful Phase 1 some years ago. So
         | those people would, I believe, be the longest-surviving
         | patients to have received an mRNA vaccine.
        
           | Scoundreller wrote:
           | The Phase 1 study might just mean it didn't immediately harm
           | the people that got it.
           | 
           | They might be followed closely for a long time; but it may
           | only be a handful of people too.
        
         | biophysboy wrote:
         | I work with RNA, but not in medicine. mRNA is not a long-term
         | molecule in the body, so its difficult to imagine direct long-
         | term effects. Of course, immune responses can cause long-term
         | damage. So the question is: should we wait to find out?
         | 
         | The doses have 30-100 ug. Assume 1)this is pure RNA, and 2)the
         | molecules are about the same size as the spike protein
         | sequence. With these assumptions, a dose gives you 10^10 RNA
         | molecules. Average sputum samples show about 10^6 molecules/mL;
         | max samples show 10^9/mL. I don't know how vaccines dilute when
         | you inject it into somebody's shoulder, but it doesn't seem
         | unreasonable to say the final conc will be between 10^6 and
         | 10^9 RNA/mL.
         | 
         | So RNA is going to be in us, whether we want it or not. The
         | question is, do you want the whole genome, or part of the
         | genome. I'm picking the one that doesn't make more virus.
        
         | IfOnlyYouKnew wrote:
         | The difference to "traditional" vaccines is really not
         | significant with regards to risk.
         | 
         | The mRNA is translated to a protein, which is the actual target
         | your immune system then recognises as foreign, attacks, and
         | remembers.
         | 
         | In a sense, it's a lot like a prodrug, which is a "traditional"
         | small-molecule that is turned into the actual drug by some
         | interaction with your body-your stomach acid, for example.
         | 
         | "mRNA" might sound scary. But it isn't going to change your
         | genome or anything like that; it's strictly downstream from
         | DNA. Any virus, bacteria, or salad you eat contains far more
         | mRNA in addition to DNA or RNA, and the first of those really
         | does come with mechanisms to insert itself into your cells' DNA
         | and has evolved to defend itself against your defences, and to
         | slowly take over your body in some way or other.
         | 
         | There are some short-term risks on the order of, say, eating
         | lobster for the first time. Allergies, for example, which can
         | be quite severe and even deadly. But those are exactly the
         | risks the trials would have uncovered, and the people possibly
         | at risks of such things would already know they are
         | susceptible.
         | 
         | There is no known mechanism for any risk that would not
         | manifest within the first day or two.
        
       | petra wrote:
       | There is a YC company that has a technology to guide small
       | molecules to cancer cells.
       | 
       | Might be able to guide mRNA too.
        
         | jdoliner wrote:
         | That would be Shasqi!
         | 
         | https://www.shasqi.com/
        
         | nextos wrote:
         | I think RNAs are great as a cell therapy. Not necessarily
         | mRNAs, but other ncRNAs which can be used to silence enhancers.
         | This would be great for many diseases.
         | 
         | mRNAs are great as a vaccine to trigger an anti-cancer
         | response, combined with checkpoint inhibitors. The big
         | challenge is to choose a good personalized mix of peptides
         | (encoded as mRNAs) in a way that scales to thousands of
         | patients.
        
       | crb002 wrote:
       | Yes, especially in an insulin pump so you can do time release.
       | 
       | This is now industrialized. Print the mRNA, slap it in lipids,
       | inject. https://www.idtdna.com/
        
       ___________________________________________________________________
       (page generated 2020-12-18 23:00 UTC)