[HN Gopher] Multiple Sclerosis Causality
       ___________________________________________________________________
        
       Multiple Sclerosis Causality
        
       Author : nabla9
       Score  : 346 points
       Date   : 2022-01-14 17:31 UTC (5 hours ago)
        
 (HTM) web link (www.science.org)
 (TXT) w3m dump (www.science.org)
        
       | mirekrusin wrote:
       | Is anybody testing for virus/bacteria vs virus/bacteria
       | interactions?
        
       | sonicggg wrote:
       | Cause is still not well explained. EBV is such an ubiquitous
       | virus, more than 90% of all adults worldwide have been infected
       | with it. Most will never know. Why is that just a tiny percentage
       | develop MS?
        
         | killjoywashere wrote:
         | EBV is associated with a lot of things that involve a tiny
         | percentage of the population. Nasopharyngeal carcinoma,
         | Hodgkin's lymphoma. Non-Hodgkin's lymphomas. Post-transplant
         | lymphoproliferative disease. Burkitt's lymphoma. Oral hairy
         | leukoplakia. Related viruses are associated with other
         | diseases, e.g. HHV-8 and Kaposi's Sarcoma, primary effusion
         | lymphoma, and Castleman's disease.
        
           | jessriedel wrote:
           | Is there an estimate anywhere of the total health burden of
           | EBV, making reasonable assumptions about causality for the
           | diseases you describe? Would be very interesting to know so
           | you could compare it to the risk of a future EBV vaccine.
        
             | Metacelsus wrote:
             | I calculated it on my blog a few months ago: Every year, it
             | causes the loss of 4.6 million disability-adjusted life
             | years due to cancers alone, and another ~2 million to
             | autoimmune diseases like multiple sclerosis.
             | 
             | https://denovo.substack.com/p/epstein-barr-virus-more-
             | maladi...
        
         | jessriedel wrote:
         | This question, though very worthwhile, doesn't necessarily need
         | to be answered. Vaccines for EBV are under development. If we
         | stop most EBV infections, we can stop most MS.
        
           | sonicggg wrote:
           | Vaccine is no guarantee though, just look at Covid. DW was
           | recently covering breakthrough cases that led to Long Covid.
           | You're speculating now.
        
             | boondaburrah wrote:
             | Right but when was the last time anyone you know got polio?
             | Vaccines aren't 100% effective but if we can get the
             | average susceptibility to the virus in the population down
             | far enough (even though it'll never be complete) there's a
             | threshold where the virus can have a hard enough time
             | hopping that it really makes a difference.
        
           | Metacelsus wrote:
           | Yeah, but will the vaccines be effective? EBV is amazingly
           | good at immune evasion. Prior antibodies don't protect
           | against re-infection.
        
       | Miner49er wrote:
       | From my understanding, the leading theory of what causes
       | autoimmune diseases is viruses. The immune system responds to the
       | virus and ends up mistakenly attacking the body as well. This
       | seems to support that, and shows that different viruses cause
       | different autoimmune diseases.
       | 
       | More info: https://www.nature.com/articles/d41586-021-01835-w
        
         | jjcon wrote:
         | Any thoughts as to why autoimmune diseases are (or at least
         | seem) more prevelent in the 1st world?
        
           | epgui wrote:
           | Broadly speaking, the hygiene hypothesis is the current
           | leading explanation.
           | 
           | To make an analogy, in AI/ML terms, it amounts to a training
           | set problem: you're not exposed to a diverse enough set of
           | microbes and pathogens, or you're exposed to a biased sample,
           | or you're not exposed to enough microbes.
           | 
           | Your immune system's role is to act as a classifier to
           | discriminate between good and bad, self and non-self. When
           | you have a bad training set, you increase the odds that good
           | things will be identified as bad, or that self antigen will
           | be recognized as foreign.
        
           | colechristensen wrote:
           | Four candidates: hygiene, better diagnostics, different
           | exposures, longer safer lives.
        
         | f6v wrote:
         | I've been reading recent research on MS and other autoimmune
         | conditions. I also study APS1 in my PhD at the moment (caused
         | by AIRE gene deficiency). I'm definitely not an expert, but I
         | don't think it's a leading theory. As always in biology,
         | autoimmune diseases probably have dozens different causes. Many
         | of them might be environmental or genetic. Better yet a
         | combination of the two.
        
       | deltaonefour wrote:
       | If MS is a faulty immune response from EBV, wouldn't a vaccine
       | theoretically and potentially trigger this same faulty immune
       | response?
       | 
       | There are obviously other causative factors influencing MS. One
       | is EBV, the other is likely a specific type of immune system.
        
         | croes wrote:
         | EBV stays in the human body, a vaccine wouldn't.
        
           | Metacelsus wrote:
           | Some vaccines (like VZV vaccine) persist in the body.
        
           | deltaonefour wrote:
           | The immune system upon reacting to EBV or a vaccine should
           | theoretically eliminate EBV on contact so it won't stay in
           | your body?
           | 
           | Are you implying that that a vaccine cannot eliminate EBV?
           | 
           | Additionally, a faulty immune response also means your immune
           | system can't differentiate between EBV and your nerve cells.
           | So theoretically speaking even if there's no EBV in your body
           | having MS means that your body thinks EBV is in your body
           | even if it's not. A vaccine in my mind could still induce
           | this reaction.
        
         | vintermann wrote:
         | Climate is also a known factor. MS is more prevalent in
         | temperate climates. A study from some years back suggested that
         | if you move before the age of 15 or so, you get the risk of
         | your new climate instead.
        
         | epgui wrote:
         | Short answer is no.
         | 
         | Long answer is that the question is premature (we need to
         | answer more mechanistic questions first, and then we need to
         | have an actual potential vaccine strategy to talk about) and
         | there is currently no particular reason to suspect this.
        
       | kisamoto wrote:
       | I will read this but as someone who has had a family member
       | diagnosed with MS if there are other connections or papers people
       | can recommend I would be very grateful.
        
       | NerdyNumbersGuy wrote:
        
       | mactournier wrote:
       | Contrary to the HN title, the paper is not about causal
       | inference, it is a case-control study. A good primer on the
       | limitations of case-control studies can be found here:
       | https://www.medicalnewstoday.com/articles/280936#limitations
        
         | letmevoteplease wrote:
         | The abstract of the study states, "These findings cannot be
         | explained by any known risk factor for MS and suggest EBV as
         | the leading cause of MS."
        
       | Metacelsus wrote:
       | For more on EBV, I've discussed it on my blog here:
       | https://denovo.substack.com/p/epstein-barr-virus-more-maladi...
       | 
       | (It doesn't just cause MS!)
        
       | brechmos wrote:
       | What is interesting is that Epstein-Barr has been reported to be
       | related to Multiple Sclerosis since the early 1980s.
       | 
       | https://pubmed.ncbi.nlm.nih.gov/?term=epstein+barr+multiple+...
       | 
       | It is great if there is new information and if this leads to
       | knowledge on how to reduce the chance of getting MS.
        
       | cheaprentalyeti wrote:
       | I saw this news item last night, posted next to that one...
       | 
       | "Study finds hydroxychloroquine delays disability for least
       | treatable form of multiple sclerosis" [0]
       | 
       | [0]: https://medicalxpress.com/news/2022-01-hydroxychloroquine-
       | di...
        
         | xadhominemx wrote:
         | Probably not
        
         | degosuke wrote:
         | The link returns 404.
        
           | pkaye wrote:
           | The link was missing the final "l".
           | 
           | https://medicalxpress.com/news/2022-01-hydroxychloroquine-
           | di...
        
           | cheaprentalyeti wrote:
           | Ah, a typo, an 'l' was missing.
           | 
           | https://medicalxpress.com/news/2022-01-hydroxychloroquine-
           | di...
        
       | [deleted]
        
       | clord wrote:
       | I wonder if MS is like the EBV version of shingles: if you don't
       | get it early, when you do, it's a much worse disease. Most people
       | pick it up early, but those who manage to avoid it and then get
       | it late are in danger. Another instance of hygiene hypothesis.
        
         | wahern wrote:
         | Some have suggested that CMV (another ubiquitous herpes virus)
         | induced evolutionary pressure for kissing and even monogamy:
         | "Kissing as an evolutionary adaptation to protect against Human
         | Cytomegalovirus-like teratogenesis",
         | https://pubmed.ncbi.nlm.nih.gov/19828260/
        
         | vintermann wrote:
         | MS isn't, but yes, Epstein-Barr virus is more serious if you
         | first catch it as an adult. That will likely knock you out with
         | mononucleosis, a.k.a kissing sickness, for a few weeks. Fatigue
         | can linger a lot longer.
        
           | latortuga wrote:
           | Definitely my experience. I had it as an adult at 26 and it
           | absolutely knocked me out for weeks. I lost a ton of weight
           | from having no appetite and having a constant sore throat.
           | Sleeping was also terrible because I couldn't breathe easily.
           | I think I missed 3 or 4 weeks of work and even when I started
           | back I could only work half days for awhile at my not-
           | strenuous desk job.
        
       | deltaonefour wrote:
       | This is a bit off topic but I have a question about causality.
       | 
       | Is causality really a fuzzy concept? For example I assume if
       | action A causes event B I assume the connection is 100%. Can we
       | really say that action A has a 30% chance of causing event B?
       | 
       | I ask because the more I think about it, when someone says action
       | A causes a 30% chance of event B occurring what he is technically
       | saying is action A is one causative factor that must occur and
       | that we're missing information about other causative factors.
       | 
       | In the case of this article. A causative link is established
       | between EBV and MS to a fuzzy probable degree. This seems to me
       | that technically what's actually occurring is that a fuzzy causal
       | link simply means that there are other causative factors we don't
       | yet know about, and likely this is a specific type of immune
       | system that reacts to EBV in a certain way.
       | 
       | Would my assessment be accurate? All causal connections are
       | either 100% and any fuzziness just means we're missing
       | information about other joint causal events that must occur to
       | trigger the outcome. Does anyone who's a statistician know?
        
         | csee wrote:
         | This is more in the domain of philosophy than statistics.
         | 
         | I wrote something in response, but then saw that the Wiki
         | article on causality was far better than what I wrote, so have
         | a look at that.
         | 
         | https://en.wikipedia.org/wiki/Causality
         | 
         | https://en.wikipedia.org/wiki/Necessity_and_sufficiency
        
         | dataflow wrote:
         | > Is causality really a fuzzy concept? For example I assume if
         | action A causes event B I assume the connection is 100%. Can we
         | really say that action A has a 30% chance of causing event B?
         | 
         | The world is probabilistic at the quantum level so I don't see
         | how it could be otherwise.
         | 
         | > I ask because the more I think about it, when someone says
         | action A causes a 30% chance of event B occurring what he is
         | technically saying is action A is one causative factor that
         | must occur and that we're missing information about other
         | causative factors.
         | 
         | To my knowledge this has been physically disproven:
         | https://en.wikipedia.org/wiki/Hidden-variable_theory#Bell's_...
         | 
         | (Note I'm just responding to your philosophical question, not
         | the biological one. In particular I'm not suggesting anything
         | about the practical relevance of quantum effects to the biology
         | discussion here, or lack thereof.)
        
         | echelon wrote:
         | > we're missing information about other causative factors.
         | 
         | Welcome to biology.
         | 
         | Perhaps EBV is particularly immunogenic, but it has to
         | reactivate in the presence of CD8+ T-cells or CD20+ B-cells
         | along with some other self-signal or co-infection. Perhaps
         | there's a chain of immune signaling that must happen upstream
         | in other immune cell populations.
         | 
         | Perhaps other agents can trigger autoimmune behavior in these
         | cells, and EBV isn't strictly required. Maybe other viruses in
         | the herpesvirus family (HSV, zoster, etc.) There could be more
         | than one set of causes, and they might not even look similar.
         | 
         | In the crazy absurd limit, maybe nothing at all. Maybe
         | autoimmunity sporadically arises with no causal agent. Random
         | radiation hits the cell at the wrong time.
         | 
         | All or none of these could be the case. Diseases can have a
         | multitude of causes, sometimes with complex interactions and
         | interdependencies, sometimes not. With cancer it's a
         | progression of increasingly worse state changes, and that could
         | be the case here too.
        
         | sva_ wrote:
         | > All causal connections are either 100% and any fuzziness just
         | means we're missing information about other joint causal events
         | that must occur to trigger the outcome.
         | 
         | I think one theory is, that the immune system has a way of
         | approximating the surface of a protein, and in this way
         | recognizes what to build antibodies against. This process could
         | be a source of fuzziness as the "protein signatures" of a virus
         | may vary from person to person. There is also the question how
         | those signatures are stored and retrieved in the immune system,
         | and why they -presumably- lead to the immune system
         | misrecognizing myelin sheaths as a threat (in some people, some
         | of the time.)
        
         | gwern wrote:
         | Is it helpful to ask about 'percentages' here? Is oxygen 0% or
         | 100% of the cause of you posting here? What about gravity?
         | 
         | Whenever you have a causal question, often taking a Pearlean
         | perspective and asking about _interventions_ would be more
         | useful. For example, there is an EBV vaccine being worked on
         | right now. If you believe OP that EBV infection is a necessary
         | but not sufficient condition for 90% of MS cases, then it would
         | be reasonable to say something like  "if we intervened by
         | making everyone got the EBV vaccine, then there would be ~90%
         | fewer MS cases than in the counterfactual universe where
         | everything else was the same but no one got the EBV vaccine."
         | That sounds much more interesting and meaningful to me than
         | talking about how "EBV is necessary but not sufficient".
        
         | peter303 wrote:
         | There was a similar debate in the 1880s. Dr. Robert Koch
         | claimed some diseases were caused by bacteria and developed a
         | procedure to prove it. The germ theory of disease was
         | controversial until then.
         | 
         | Its suspected several diseases without known causes may be
         | caused by a bacterium, virus or protein. But lack the evidence
         | to satisfy the Koch postulates. These diseases include some
         | cancers and many human nervous system diseases.
        
       | Mezzie wrote:
       | I have MS and my first relapse was a pretty textbook case of
       | transverse myelitis of the sort that the EBV can cause.
       | 
       | I know some people have been asking about why that might be the
       | case when a ton of people have EBV, and I think the causality may
       | go the other way: Those of us with something wrong are more
       | likely to both have EBV complications _and_ MS.
       | 
       | There are other viruses like this as well (ones that most people
       | get/have but aren't dangerous). I was on one medication where I
       | needed to be tested monthly because if I got one particular
       | (normally harmless) virus, the suppression caused by the
       | medication meant I would probably die.
       | 
       | There's pretty clearly some sort of relation between the state of
       | one's immune system + how it deals with 'benign' viruses + auto-
       | immunity, and I'm excited to see what the future holds, but for
       | now it's a cool confirmation of something a lot of MSers have
       | talked about amongst ourselves for a while.
        
         | jessriedel wrote:
         | > I think the causality may go the other way: Those of us with
         | something wrong are more likely to both have EBV complications
         | and MS.
         | 
         | I'm unsure, but it sounds like you're hypothesizing that EBV
         | infections does not cause MS symptoms, and that instead some
         | some third factor causes both, so that preventing EBV infection
         | would not prevent MS. The paper being discussed specifically
         | considers and rejects this possibility with pretty strong
         | evidence. Indeed, that is the main contribution of the paper.
         | (The fact that 99% of MS sufferers have EBV, way higher than
         | the 90% baseline in the general population, has been known for
         | a while.)
        
         | roganartu wrote:
         | > There are other viruses like this as well (ones that most
         | people get/have but aren't dangerous). I was on one medication
         | where I needed to be tested monthly because if I got one
         | particular (normally harmless) virus, the suppression caused by
         | the medication meant I would probably die.
         | 
         | For those curious, I'm going to guess and say this might've
         | been Tysabri (natalizumab) and that the virus in question is
         | JCV (John Cunningham virus). After approximately two years on
         | Tysabri, people who test positive for JCV antibodies (approx
         | half the population of the US) have an extremely high chance of
         | developing an often-fatal brain infection called PML
         | (Progressive Multifocal Leukoencephalopathy).
         | 
         | Tysabri was originally pulled by the FDA due to PML deaths back
         | in the early 2000s, but later got reapproved after the link to
         | JCV was discovered. Nowadays patients get tested for JCV
         | antibodies every 6 months. The treatment is considered quite
         | safe now, with the caveat that if you test positive you cannot
         | get Tysabri anymore. Most people don't switch from negative to
         | positive, but it happens occasionally.
         | 
         | Source: my wife has a rare form of MS and has been on Tysabri
         | for about 5 years now, relapse free. Modern MS drugs are a
         | scientific marvel.
        
       | xdrone wrote:
       | Here's a John McDougall talk, he had some close ties to Dr Swank,
       | known for a lot of early MS research.
       | 
       | https://www.youtube.com/watch?v=fmZdI8jinIw
       | 
       | tldw: When your stomach layer is compromised, unprocessed food
       | gets into your body. Food like animal protein, similar to our
       | proteins, get attacked by the immune system, some of your cells
       | are also mistakenly attacked.
       | 
       | Anyone with the compromised stomach is at greater risk for auto
       | immune diseases. For example look of rates of ms among celiac or
       | crohn's sufferers.
       | 
       | Same goes for type 1 diabetics, also autoimmune. Research
       | suggests casein from dairy gets in the body, your immune system
       | accidentally attacks your pancreas insulin making cells.
       | 
       | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5518798/
        
         | sumosudo wrote:
         | All the health problems of modern society can be diminished
         | greatly by ensuring the proper functioning of the gut.
        
       | howinteresting wrote:
       | This study appears to suggest that MS is essentially "long
       | Epstein-Barr." Terrifying if the same pattern holds for covid,
       | given the number of people who have some sequelae (the most
       | conservative estimates are 2-5% for "serious" post-viral
       | symptoms, which would be hundreds of millions of people
       | worldwide). There will be an extraordinary amount of suffering,
       | not to mention radical shifts in economic and public policy.
        
         | axg11 wrote:
         | The study really doesn't suggest that. All it suggests is that
         | EBV seropositive people are much more likely to develop MS than
         | the seronegative minor population.
         | 
         | As for long COVID, the data quality is very variable. I'd like
         | to see a controlled study that compares recovery from COVID vs.
         | other respiratory viruses.
        
           | howinteresting wrote:
           | It's pretty clear that the causal explanation is the only
           | reasonable one here. (Besides, at least for covid, not
           | everyone who contracts the virus develops antibodies for it:
           | https://journals.asm.org/doi/10.1128/Spectrum.00904-21 )
           | 
           | There's a reason I quoted conservative estimates of long
           | covid. The 2% is from this ONS study: https://www.ons.gov.uk/
           | peoplepopulationandcommunity/healthan.... The high end of
           | estimates is 10-30%, which would mean the end of our current
           | era of civilization.
        
         | vintermann wrote:
         | That sounds unlikely. Epstein-Barr is a herpesvirus, and it's
         | persistent - once you catch it, it stays latent in your body
         | and you'll shed it through your saliva periodically for life.
         | 
         | As far as I can find, coronaviruses have no way to pull that
         | trick. Once your immune system gets rid of it, it's gone and
         | not coming back unless you're infected again by a sufficiently
         | unrecognizable relative.
        
           | Tagbert wrote:
           | Like my uncle, Oscar? He looks nothing like anyone else in
           | the family and looks out of place in family photos. I'm
           | pretty sure he is antivax, too.
        
         | kmeisthax wrote:
         | There's another paper from June of last year[0] that proposed a
         | long COVID explanation: Epstein-Barr reactivation. I haven't
         | seen any follow-up work yet, but if both that and this paper
         | have any predictive power to them[1] we might start seeing a
         | cohort of "long long COVID[2]": people who got COVID, didn't
         | recover, and then progressed to MS.
         | 
         | [0] https://pubmed.ncbi.nlm.nih.gov/34204243/
         | 
         | [1] I'm particularly worried about the "EBV reactivation"
         | theory as COVID-related studies have been used as a vehicle for
         | many medical frauds.
         | 
         | [2] As per ISO standards long long COVID must have an infection
         | duration represented with at least a 64-bit machine integer
        
         | stefan_ wrote:
         | There are lots of viruses that persist forever. You can get
         | chickenpox as a kid then die of shingles as a retiree. Measles
         | might give you only mild symptoms then 6-15 _years_ after
         | reactivate and cause Subacute sclerosing panencephalitis
         | (SSPE), a fatal brain inflammation with all the interesting
         | symptoms that implies (starting out with mood swings
         | progressing into dementia, muscle spasms and blindness).
         | 
         | Think of this the next time some brain dead person starts
         | talking about the "unknown long term effects of the vaccine" -
         | we know what has long term effects, and it's freaking live
         | viruses!
        
         | f38zf5vdt wrote:
         | Coronaviruses do a weird thing where their viral RNA persists
         | in cells long after the initial infection. [1] No one knows if
         | this has a bearing on long COVID or not.
         | 
         | [1] https://www.nature.com/articles/s41592-021-01145-z
        
           | jonnycomputer wrote:
           | Yeah, I don't trust the viruses not to do sneaky shit. Not at
           | all.
        
           | vintermann wrote:
           | It's not a terribly weird thing for a virus to do, but as far
           | as I know (just an interested amateur) coronaviruses can't
           | use this to stay latent.
        
             | f38zf5vdt wrote:
             | We don't really know. A recent manuscript submitted to
             | Nature shows minute persistence in various tissues as long
             | as 230 days or more post-infection. [1] RNA is fragile, if
             | the infection is completely cleared or not integrated into
             | the genome in some way we would not expect it to persist.
             | 
             | [1] https://assets.researchsquare.com/files/rs-1139035/v1_c
             | overe... (Figure 1)
        
             | howinteresting wrote:
             | I would be hesitant to generalize from existing
             | coronaviruses to SARS-2. As the sibling comment points out,
             | SARS-2 has been shown to persist in every organ of the body
             | well after initial infection.
        
       | dm319 wrote:
       | Here's a link to the article [0].
       | 
       | Just a bit of background - 95% of humans will experience
       | infection with EBV at some point in their lives. Once you're
       | infected, it remains latent, only flaring up in particular
       | circumstances. MS is an autoimmune disease, like many others, and
       | this paper does not imply that EBV directly causes MS. Obviously,
       | as so many more people have EBV than have MS, EBV infection does
       | not completely explain why people get MS.
       | 
       | Just to put a small caveat to the paper. The comparison is to EBV
       | 'seronegative' population - this is a minority of people (i.e.
       | people who do not have evidence of being infected with EBV). You
       | could argue this is an 'unusual' population in the first place
       | and there's something about them that provides protection from
       | MS.
       | 
       | Another point is that EBV is a risk factor, there are other risk
       | factors known too. I think the key to understanding a lot of
       | autoimmune diseases is to understand how our adaptive immune
       | system works. Our immune response is a very complex cell-to-cell
       | interaction between millions of cells all with different roles,
       | and how the immune system decides whether something is a threat
       | or not is not, and how to respond to it, is not yet clear.
       | 
       | [0] https://www.science.org/doi/10.1126/science.abj8222
        
         | jonnycomputer wrote:
         | I think this is may be one reason they used CMV infection as a
         | control. Unless you think that the people who don't get CMV are
         | not special, but the ones who don't get EBV are...
        
           | dm319 wrote:
           | Yes that's a good point.
        
         | moneywoes wrote:
         | As someone with an autoimmune disease, is there anything I can
         | do to prevent getting more? Iirc having one is a risk factor
         | for others
        
           | mpreda wrote:
           | [this is not medical advice] Some things that may modulate
           | the immune system are: vitamin D3, intestinal worms,
           | exercise, diet / fasting, and gradual stimulation of the
           | immune response ("desensitisation").
        
           | dm319 wrote:
           | I'm afraid this is out of my scope of understanding. Once the
           | immune system determines something is non-self, the immune
           | system can often self-propagate the response. It eventually
           | enters a tolerance phase where it aims to just 'control' the
           | threat.
           | 
           | There are some known modulators of the immune system, but the
           | medical forms can be especially blunt tools (i.e. steroids).
           | Locally directed treatment is better, and maybe in the future
           | we'll have specially crafted cells that can inhibit a
           | specific response for particular antigens.
           | 
           | There is a long and slightly-controversial link between
           | stress (and lots of other environmental factors) affecting
           | the immune system. I'm not familiar with the literature.
        
         | dekhn wrote:
         | At least part of the adaptive immune system is implemented in
         | the thymus. As an infant, the thymus makes examples of nearly
         | every type of cell in the body and uses it as negative labelled
         | examples to tune the false positive detector so it doesn't
         | identify self as threat. From an information theory
         | perspective, that's pretty extraordinary (you don't normally
         | expect differentiated cells in an organ to act like cells from
         | another organ).
         | 
         | Another part of the adaptive immune system randomly shuffles
         | different regions of genes together to produce enormous
         | diversity (searching for a rare example of something that
         | "works"), then picks the proteins from those genes that work
         | best and distributes them throughout the body.
         | 
         | Pretty amazing stuff.
        
           | dm319 wrote:
           | Yes, it's really fascinating stuff. Just to add to that,
           | cells must present a continuous sample of their proteasome on
           | the cell surface in the form of a short peptide 9-12 amino
           | acids long. T cells will recognise when the cell is producing
           | protein it shouldn't be (i.e. because it became cancerous or
           | infected with a virus), even if only one amino acid is
           | incorrect.
           | 
           | It learns this in the thymus, which has a bizarre gene called
           | AIRE which switches on genes from all over the body,
           | essentially creating a representation of the entire body in
           | the thymus gland as a sort of sandbox before they are let
           | out.
           | 
           | However, we don't have enough T cells to recognise every
           | possible sequence of 11 amino acids (which would weigh around
           | 1.5 tons), so T cells must be so-called 'cross-reactive'[1].
           | And therefore other factors must go into how T cells respond
           | to abnormalities.
           | 
           | [1] https://www.nature.com/articles/nri3279
        
             | dekhn wrote:
             | yep, i was referring to AIRE without naming it. I saw a
             | talk about it years ago and it blew my mind. In retrospect,
             | it seems to just sort of fall out from the way you'd expect
             | adaptive immunity to evolve, though.
        
               | hallway_monitor wrote:
               | I don't see many YouTube links posted here, but this
               | Kurzgeasgt video blew my mind on this topic. Our immune
               | system really is amazing.
               | 
               | https://www.youtube.com/watch?v=LmpuerlbJu0
        
           | mdswanson wrote:
           | Can't help but to highly recommend the recent book by Philipp
           | Dettmer, Immune: A Journey Into The Mysterious System That
           | Keeps You Alive. It's fantastic and very readable: https://ww
           | w.amazon.com/dp/B08XTNHRR5/ref=cm_sw_em_r_mt_dp_FX...
        
           | whatshisface wrote:
           | What's the connection to information theory?
        
             | dekhn wrote:
             | sorry, I shouldn't have thrown that in there.
        
       | aserdf wrote:
       | there is an experimental[0] treatment for MS, the "immune system
       | reboot". i am a layperson but my understanding is stem cells are
       | taken from the patient, the immune system is "destroyed" through
       | immunosuppressants and the stem cells are then used to rebuild a
       | "naive" immune system in the patient.
       | 
       | based on the info in the OP, i wonder if the MS result from EBV
       | is random; what is the probability of a rebooted immune system to
       | follow the same path after exposure?
       | 
       | [0] - https://www.nih.gov/news-events/nih-research-
       | matters/immune-...
        
         | wswope wrote:
         | The initial susceptibility is mostly going to be predetermined
         | by the MHC, and therefore remain the mostly the same. However,
         | the pathological outcome is ostensibly a product of certain
         | strains of pathogens plus luck of the draw on somatic
         | hypermutation in response to said pathogen.
        
           | whatshisface wrote:
           | For something as rare as MS, "spin again" is ninety percent
           | of a cure.
        
       | sabujp wrote:
       | I was wondering what the genetic factors are that cause EBV to
       | push people to get MS and found this excellent paper [1] (see the
       | genetic susceptibility section).
       | 
       | [1] https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334604/
       | 
       | [2]
       | https://www.google.com/search?q=genetic+factors+that+cause+E...
        
       | wtetzner wrote:
       | An interesting talk about someone who was able to reverse a lot
       | of her MS symptoms with a change in diet:
       | https://www.youtube.com/watch?v=KLjgBLwH3Wc
        
         | moneywoes wrote:
         | So basically no wheat, milk and processed foods?
        
           | omreaderhn wrote:
           | I skimmed through the presentation and I'm not sure how you
           | arrived at that as your takeaway. The dietary advice given in
           | there is much more complex than that.
        
         | epgui wrote:
         | Biochemist here: I would advise to exercise strong caution when
         | looking at dietary changes in the context of MS.
         | 
         | A lot of advice gives people the illusion that they have more
         | control over their illness than they actually do, and a lot of
         | the diets cause unnecessary harm (as a heuristic: the more
         | things you cut out, the higher the potential for harm).
         | 
         | That said, healthy eating and regular physical exercise is
         | always a good idea, and even more so if you have any existing
         | illness.
        
         | garganzol wrote:
         | According to numerous observations, neurodegenerative diseases
         | and the lack of energy (ATP) are tightly interconnected.
         | 
         | Thanks for posting. And yes, there is mitochondria involved,
         | once again.
        
       | dmitryminkovsky wrote:
       | > and the team identified 1566 matched controls for them.
       | 
       | Can anyone please shed some light on this? How would this work?
        
       | onemoresoop wrote:
       | Interestingly, Moderna has some trial for mRna vaccine for
       | Epstein-Barr virus [0]
       | 
       | [0]- https://www.clinicaltrialsarena.com/news/moderna-ebv-
       | vaccine...
        
       | cjensen wrote:
       | It's weird to me that they say 35 of the 801 MS cases were
       | negative then positive before getting MS. The control group had
       | 107 of 1566 were negative, but they don't bother to tell us how
       | many of them ended up positive.
       | 
       | I assume enlisting is a high-risk place to get EBV, and without
       | info on the control I don't see how you can draw conclusions. But
       | I'm basing this on the summary rather than the actual article:
       | does the article have the info?
        
       | asdfasgasdgasdg wrote:
       | Moderna are trialing an EBV vaccine. If it's successful, I wonder
       | if we will see an end to MS. A cure would be great but failing
       | that a prevention is almost as good.
        
       | reedf1 wrote:
       | Terrifying - I was EBV positive 4 years ago. It does not mention
       | an association between EBV severity and MS, but I was very
       | symptomatic and had post viral fatigue for around a year. I had
       | no idea about the MS association!
        
         | danuker wrote:
         | > According to epidemiological studies, the EBV is estimated to
         | be positive in more than 90% of the world's populations
         | 
         | - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6008310/
         | 
         | > A total of 2.8 million people are estimated to live with MS
         | worldwide (35.9 per 100,000 population)
         | 
         | - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7720355/
         | 
         | Given that you have EBV, I guess you're in the unlucky 90%,
         | increasing your odds from 359 in a million to a ...whopping...
         | 399 in a million.
        
           | BobbyJo wrote:
           | Since the risk for the non-EBV group is 32x less, you'd be
           | increasing your odds from like 11 in a million to 399 in a
           | million no?
        
             | andi999 wrote:
             | If you knew you were negative yes, if the status was
             | unknown then not.
        
         | shadowgovt wrote:
         | If you're EBV-positive, you're in good company... It infects
         | something like 90% of the human population.
         | 
         | Makes me wonder how many virii are out there that haven't been
         | identified by modern medicine because their spread vector is so
         | low-impact that they never even trigger symptoms. A virus like
         | that would become real indistinguishable from "behavior of the
         | human body" in not very much time if its infectivity was high.
        
           | bigbillheck wrote:
           | There's the anelloviruses which are at least as prevalent and
           | nobody really knows what they do.
        
           | axg11 wrote:
           | Great question. A related question: how many undiscovered
           | viruses exist that are beneficial to the host?
        
         | arbuge wrote:
         | Calm down... from the article:
         | 
         | "Note, though, that EBV would then be in the "necessary but not
         | sufficient" category. There's something about the interaction
         | of particular human immune systems with EBV infection that
         | pushes things over into the pathological state of multiple
         | sclerosis, and we don't really know how to identify these
         | people. But that fits with what we know about infectious
         | disease in general - everyone's different. The situation with
         | Guillian-Barre is similar - a small number of people tip over
         | into neurological pathology, for reasons unknown, and that one
         | also often seems to follow some sort of viral infection."
        
           | jka wrote:
           | That's a good quote, thank you.
           | 
           | About the use of "calm down" as an instruction: while your
           | sentiment is good (to reduce another person's anxiety), it's
           | not always possible for someone to follow that when it is
           | received as an instruction. It's tricky to estimate other
           | people's emotional state based on text, and for them to infer
           | your tone. I'm overexplaining and sure that you probably
           | understand all that; but it feels worth mentioning.
        
             | jonnycomputer wrote:
             | True. My first reaction to the directive, was that it was
             | rude. Reading more of the context attenuated that
             | impression, but I still think it could have been phrased
             | less ... paternalistically?
        
               | jka wrote:
               | You could be onto something there, yep.
        
               | jonnycomputer wrote:
               | Communication is hard.
        
               | zepto wrote:
               | It is, but there are some easy heuristics before you get
               | to the hard stuff.
               | 
               | One is that telling people how they should feel about
               | things is usually irritating.
        
               | jka wrote:
               | It certainly is.
               | 
               | Here's a (probably totally unrelated) comment that I
               | think is good food for thought:
               | https://news.ycombinator.com/item?id=29917158
        
               | jonnycomputer wrote:
               | Interesting.
        
               | jka wrote:
               | :)
        
             | dwmbt wrote:
             | > About the use of "calm down" as an instruction: while
             | your sentiment is good (to reduce another person's
             | anxiety), it's not always possible for someone to follow
             | that when it is received as an instruction.
             | 
             | this is a pet peeve of mine. something i picked up when i
             | was a counselor at a special needs camp was the idea that
             | everyone (regardless of where you lie on any spectrum) has
             | a unique sensitivity to criticism. it's important to NOT
             | treat people how you would like to receive criticism, but
             | to assess how you think they would best consume and digest
             | it. obviously, this is extremely difficult on the internet
             | and i'm just nitpicking but i had an altercation with my
             | sibling earlier when they told me to 'calm down' so i'm
             | still on edge about it.
             | 
             | i'm sure OP doesn't need to hear this but typically i find
             | that a good alternative is to nudge someone into
             | rationality. not to say that the parent comment is
             | irrational, but when you simply show someone why they may
             | be overreacting, they may very well 'calm down' all by
             | themselves. if said person refuses to acknowledge your
             | rationale, it's likely they aren't welcome to any criticism
             | at all and won't be 'calming down' in any capacity.
        
         | RspecMAuthortah wrote:
         | How do you even test for EBV? The GP I asked laughed it off
         | when I was living in Canada basically saying I am already
         | positive and no need to test.
        
           | currency wrote:
           | This was a study conducted by the military on soldiers. They
           | all contributed three blood samples over a period of time
           | that were tested for a large number of conditions. EBV was
           | the only one that contributed to MS.
        
           | rmind wrote:
           | If you want to test whether you already _had_ EBV, then it
           | would be a test for Immunoglobulin G (IgG) antibodies to the
           | EBV viral capsid antigen (VCA). It shows whether the virus
           | has established the latency in your body. Most laboratories
           | would just label it as  "EBV IgG", so just ask for that.
           | 
           | If you are in your 30 or older, then you most likely have had
           | it already.
        
             | panabee wrote:
             | thanks for sharing. does this test for EBV in both latent
             | and lytic phases?
        
           | cestith wrote:
           | There are at least two tests for it, or at least there were
           | in the mid 1990s. One's a quick clinical test with lots of
           | false negatives than can be done in-office but unless it's a
           | campus healthcare clinic at a university they probably don't
           | bother. The other is a more sensitive lab test that takes a
           | few days. If you're having a really serious set of symptoms
           | they may test to confirm it's not something else. If it's a
           | minor case, two weeks of bedrest fix a lot of issues in a
           | young adult and you do probably already have it anyway.
        
           | epgui wrote:
           | You can test for pretty much anything in a research setting.
           | 
           | In a clinical setting, doctors will rely a lot on heuristics
           | and practical considerations, and there may not be any
           | clinical testing available.
        
         | lalaland1125 wrote:
         | One important thing to note is that EBV is extremely prevalent.
         | Almost everyone gets it eventually and very few of those people
         | develop MS.
        
           | jonnycomputer wrote:
           | But a lot of people don't really develop severe symptoms
           | either, right?
        
             | cestith wrote:
             | Some develop no noticeable symptoms and many develop mainly
             | annoying ones for a few weeks to a few months. I had the
             | misfortune to develop symptoms from infectious
             | mononucleosis shortly after minor surgery. My GP and
             | surgeon kept giving me antibiotics and sending me back to
             | uni. Finally after several months of fatigue, nausea, and
             | depressed appetite I wandered into campus health jaundiced
             | with a 104o F fever and a temporarily enlarged liver. I
             | ended up withdrawing from that semester and retroactively
             | from the previous one. I was ordered into a month of
             | bedrest and half a year of decreased physical activity
             | while recovering. So I guess we could say there's a wide
             | range of severity, partly depending on how soon it's
             | addressed.
        
             | marvin wrote:
             | When I had it, my doctor said that if I was a professional
             | athlete, the standard outcome would be to just consider the
             | current season lost and switch focus to getting well again
             | in time for the next.
             | 
             | I was relatively useless for two weeks and then spent the
             | next four months getting back to my normal energy levels.
             | "Severe" is a question of definitions, I think. I wouldn't
             | consider that kind of illness severe, but it certainly put
             | a dent in things for a while. Properly inconvenient, I'd
             | say. I think this degree is pretty common.
        
         | peter303 wrote:
         | Possibly a co-factor, since many get EBV and few MS.
        
         | nefitty wrote:
         | The article says EBV is prevalent and is probably necessary but
         | not sufficient for MS. If I was in that position I would look
         | at my gene test results for any markers that correlate with MS.
         | The more of those markers, the more intensely I would
         | prioritize following relevant interventions.
        
           | nradov wrote:
           | What are the relevant interventions? Which genes correlate
           | with MS?
        
             | nefitty wrote:
             | That's the independent study part. I wish I could be more
             | help but that research is time and money intensive, and not
             | guaranteed to be fruitful. It also involves review of
             | multiple studies, sometimes several dozen. Then it's about
             | seeing which ones are relevant to an individual's specific
             | genetic mutations.
             | 
             | I'm currently going through dozens of reports from
             | SelfDecode, and that's after massive amounts of work on
             | their end. I think I'm out a few hundred bucks so far, but
             | it is an amazing service. I will soon seek their genetic
             | consultation service, which is about $1k, and their lab
             | testing service.
        
         | f38zf5vdt wrote:
         | If you're going to develop MS as an adult after getting EBV
         | mononucleosis, it's likely that it will be soon (5-10 years)
         | after you have the initial infection as an adult. There's only
         | a long delay in children according to one study. [1] Every
         | passing year the probability of getting MS should decay after
         | that.
         | 
         | Female sex and EBV mononucleosis during adolescence are the
         | biggest risk factors.
         | 
         | [1] https://nn.neurology.org/content/4/3/e308
        
           | config_yml wrote:
           | Interesting. My sister and I both had mononucleosis before
           | puberty, and she was diagnosed with MS in her late twenties.
        
         | [deleted]
        
         | [deleted]
        
         | cjensen wrote:
         | EBV causes more severe symptoms the older you are. So everyone
         | here who remembers getting it and it being terrible? That's
         | because you got it as an adult. If you get it as a kid, it can
         | be asymptomatic.
         | 
         | I got it at 36 and had a fever that leveled me for 3 weeks.
         | Between "wait 1 week before bothering your doctor" and multiple
         | rounds of tests, they didn't even diagnose it as EBV until the
         | 3rd week.
        
         | MaximumYComb wrote:
         | Wow, I was also EBV positive ~4 years ago (45 months), was
         | symptomatic and I had post viral fatigue for around a year. It
         | was 12 months before I could do light physical training and it
         | was around 2.5 years before I could train physically at high
         | intensity.
        
         | Severian wrote:
         | Found this in my news feed, so this timely. Good news I guess!
         | 
         | https://www.forbes.com/sites/roberthart/2022/01/14/moderna-s...
        
           | Miner49er wrote:
           | Is there any evidence that the vaccine wouldn't also cause
           | MS? From my understanding, MS is caused by the immune
           | response, and the vaccine would trigger a similar (or same?)
           | immune response.
        
         | garganzol wrote:
         | There is one more condition you may be interested in: CFS/ME.
         | It manifests itself primarily as a chronic fatigue and is
         | believed to onset after a trigger event: virus, intoxication,
         | hypoxia, stress, and the like.
         | 
         | I talked to some people with MS and most of them told me the
         | same story: the trigger event, followed by some time, then
         | onset of a full-blown MS.
         | 
         | I wonder: are those diseases really different? Or maybe this is
         | the very same disease but with a bit different outcomes:
         | myalgic encephalopathy vs sclerous plaques. Both are driven by
         | the inflammation, both have the same initiating sequence.
         | 
         | What leads me to strongly suspect that it may be just different
         | manifestations of the same disease is the involvement of
         | mitochondria in both MS and CFS/ME.
        
           | rmind wrote:
           | Back in 1980s, there were proposals for a "chronic
           | mononucleosis" or "chronic mononucleosis syndrome" as a
           | diagnosis / standard disease. There were very comprehensive
           | studies trying to investigate the patients who had chronic
           | fatigue and other long lasting debilitating symptoms. After a
           | good decade of studies, the research community found that
           | this group of patients is very consistent (their complaints,
           | symptoms, etiology), but failed to prove EBV as a cause
           | (although the studies did not disprove it either) or at least
           | come up with a clear serological diagnostic criteria. So, in
           | 1990s they decided to define a generic Chronic Fatigue
           | Syndrome (CFS) as a standardized disease. Other viruses and
           | pathogens can cause CFS/ME and a broader definition would
           | sometimes include even psychosomatic patients, so as a result
           | CFS/ME has been quite discredited.
           | 
           | Diagnostic techniques evolved and research progressed. In the
           | recent decade, new studies are very close to proving that EBV
           | is indeed a likely cause of CFS/ME (well, one segment, as
           | there are other causes too). Reference:
           | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7912523/
        
           | radicalbyte wrote:
           | I have this pet theory that CFS/ME is what a lot of long-
           | covid patients are suffering. I knew a few people who have
           | been affected by it, and it really limits them. Just as long-
           | covid seems to.
        
             | garganzol wrote:
             | I came to the same conclusion as well. Moreover, I was
             | somewhat successful in healing post-viral CFS/ME using the
             | therapy targeted at mitochondria with large doses of B1 and
             | B3 vitamins [1].
             | 
             | [1] https://news.ycombinator.com/item?id=29138006
        
           | thewebcount wrote:
           | And along with CFS/ME, also look up POTS, MCAS/MCAD, and EDS.
           | My wife had a very bad bout of mono in late high school and
           | 15 years later developed POTS, MCAS, and what the
           | rheumatologist called "unspecified connective tissue
           | disorder," which seems like a mild case of EDS. After 10-15
           | years of trying treatments, she's significantly worse off.
           | :-/
           | 
           | There are tons of people (mostly women) out there with this
           | set of conditions, and they're only starting to be taken
           | seriously. It's a set of life-altering conditions and dealing
           | with the medical system when you have it can be infuriating
           | and exhausting. I hope you don't have any of these things.
        
       | aljungberg wrote:
       | The parallel to Guillan Barre Syndrome seems intuitive. MS and
       | GBS are both autoimmune disorders which damage myelin. MS is
       | slower and chronic while GBS is acute and rarely relapses. What
       | if MS is a low grade persistent immune response to a chronic
       | viral infection such that those bad antibodies are created in
       | small amounts indefinitely?
        
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