tminor formatting changes - cngf-pf - continuum model for granular flows with pore-pressure dynamics (renamed from 1d_fd_simple_shear)
 (HTM) git clone git://src.adamsgaard.dk/cngf-pf
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       ---
 (DIR) commit 7f7febf3788d9fc8794e456555332e50123ed6bc
 (DIR) parent 2be72b1f936e1bef3a3e6f5464978d6ead9f3590
 (HTM) Author: Anders Damsgaard <anders@adamsgaard.dk>
       Date:   Thu,  2 Sep 2021 14:12:58 +0200
       
       minor formatting changes
       
       Diffstat:
         M simulation.c                        |      56 +++++++++----------------------
       
       1 file changed, 16 insertions(+), 40 deletions(-)
       ---
 (DIR) diff --git a/simulation.c b/simulation.c
       t@@ -30,32 +30,21 @@ init_sim(struct simulation *sim)
                        err(1, "%s: could not write simulation name", __func__);
        
                sim->G = 9.81;
       -
                sim->P_wall = 120e3;
                sim->mu_wall = 0.45;
                sim->v_x_bot = 0.0;
                sim->v_x_fix = NAN;
                sim->v_x_limit = NAN;
       -
       -        sim->nz = -1;                /* cell size equals grain size if negative */
       -
       -        /* lower values of A mean that the velocity curve can have sharper
       -         * curves, e.g. at the transition from μ ≈ μ_s */
       -        sim->A = 0.40;                /* Loose fit to Damsgaard et al 2013 */
       -
       -        /* lower values of b mean larger shear velocity for a given stress
       -         * ratio above yield */
       -        sim->b = 0.9377;        /* Henann and Kamrin 2016 */
       -
       -        /* Henann and Kamrin 2016 */
       -        /* sim->mu_s = 0.3819; */
       -        /* sim->C = 0.0; */
       -        /* Damsgaard et al 2013 */
       -        sim->mu_s = tan(DEG2RAD(22.0));
       -        sim->C = 0.0;
       +        sim->nz = -1;                   /* cell size equals grain size if negative */
       +
       +        sim->A = 0.40;                            /* Loose fit to Damsgaard et al 2013 */
       +        sim->b = 0.9377;                    /* Henann and Kamrin 2016 */
       +        /* sim->mu_s = 0.3819; */            /* Henann and Kamrin 2016 */
       +        /* sim->C = 0.0;       */            /* Henann and Kamrin 2016 */
       +        sim->mu_s = tan(DEG2RAD(22.0)); /* Damsgaard et al 2013 */
       +        sim->C = 0.0;                   /* Damsgaard et al 2013 */
                sim->phi = initval(0.25, 1);
       -        sim->d = 0.04;                /* Damsgaard et al 2013 */
       -
       +        sim->d = 0.04;                            /* Damsgaard et al 2013 */
                sim->transient = 0;
                sim->phi_min = 0.20;
                sim->phi_max = 0.55;
       t@@ -79,39 +68,29 @@ init_sim(struct simulation *sim)
                /* sim->phi = initval(0.35, 1); */
                /* sim->d = ??; */
        
       -        /* grain material density [kg/m^3] */
       -        sim->rho_s = 2.6e3;        /* Damsgaard et al 2013 */
       -
       -        /* spatial settings */
       +        sim->rho_s = 2.6e3;                    /* Damsgaard et al 2013 */
                sim->origo_z = 0.0;
                sim->L_z = 1.0;
       -
       -        /* temporal settings */
                sim->t = 0.0;
                sim->dt = 1.0;
                sim->t_end = 1.0;
                sim->file_dt = 1.0;
                sim->n_file = 0;
       -
       -        /* fluid settings */
                sim->fluid = 0;
       -
                sim->rho_f = 1e3;
        
       -        /* Water at 20 deg C, Goren et al 2011 */
       -        /* sim->beta_f = 4.5e-10; */
       -        /* sim->mu_f = 1.0-3; */
       +        /* Water at 20 deg C */
       +        /* sim->beta_f = 4.5e-10; */    /* Goren et al 2011 */
       +        /* sim->mu_f = 1.0-3; */        /* Goren et al 2011 */
        
                /* Water at 0 deg C */
                sim->beta_f = 3.9e-10;        /* doi:10.1063/1.1679903 */
                sim->mu_f = 1.787e-3;        /* Cuffey and Paterson 2010 */
        
                sim->alpha = 1e-8;
       -
                sim->D = -1.0;        /* disabled when negative */
        
       -        /* Damsgaard et al 2015 */
       -        sim->k = initval(1.9e-15, 1);
       +        sim->k = initval(1.9e-15, 1);   /* Damsgaard et al 2015 */
        
                /* Iverson et al 1994: Storglaciaren */
                /* sim->k = initval(1.3e-14, 1); */
       t@@ -395,8 +374,8 @@ check_simulation_parameters(struct simulation *sim)
                                warn_parameter_value("constant diffusivity does not work in "
                                                     "transient simulations",
                                                     sim->D, &return_status);
       -
                }
       +
                if (return_status != 0) {
                        fprintf(stderr, "error: aborting due to invalid parameter choices\n");
                        exit(return_status);
       t@@ -785,7 +764,7 @@ temporal_increment(struct simulation *sim)
                        for (i = 0; i < sim->nz; ++i)
                                sim->phi[i] += sim->phi_dot[i] * sim->dt;
        
       -        if (sim->fluid) {
       +        if (sim->fluid)
                        for (i = 0; i < sim->nz; ++i) {
                                if (isnan(sim->p_f_dot[i])) {
                                        errx(1, "encountered NaN at sim->p_f_dot[%d] (t = %g s)",
       t@@ -794,11 +773,9 @@ temporal_increment(struct simulation *sim)
                                        sim->p_f_ghost[i + 1] += sim->p_f_dot[i] * sim->dt;
                                }
                        }
       -        }
        
                for (i = 0; i < sim->nz; ++i)
                        sim->d_x[i] += sim->v_x[i] * sim->dt;
       -
                sim->t += sim->dt;
        }
        
       t@@ -881,7 +858,6 @@ coupled_shear_solver(struct simulation *sim,
                                        r_norm_max = max(sim->g_r_norm, sim->nz);
                                        if (r_norm_max <= rel_tol && coupled_iter > 0)
                                                break;
       -
                                        if (coupled_iter++ >= max_iter) {
                                                fprintf(stderr, "coupled_shear_solver: ");
                                                fprintf(stderr, "Transient solution did not converge "