tLog - sphere - GPU-based 3D discrete element method algorithm with optional fluid coupling
 (HTM) git clone git://src.adamsgaard.dk/sphere
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       Date              Commit message                            Author
 (DIR) 2024-08-19 14:27  granularTemperature.py: script to compu…  Anders Damsgaard
 (DIR) 2023-02-21 14:01  darcy.cuh: remove synchronization calls…  Anders Damsgaard
 (DIR) 2023-02-21 10:42  darcy.cuh: remove coalesced write synch…  Anders Damsgaard
 (DIR) 2023-02-21 10:23  device.cu: transition from deprecated h…  Anders Damsgaard
 (DIR) 2023-02-15 10:44  resolve thread lock with contactmodel=2   Anders Damsgaard
 (DIR) 2023-02-10 13:33  add debugging info to stdout              Anders Damsgaard
 (DIR) 2023-02-09 12:13  file_io.cpp: fix error message, thanks …  Anders Damsgaard
 (DIR) 2023-02-09 11:43  device.cu: estimate number of cudaCores…  Anders Damsgaard
 (DIR) 2023-02-09 11:30  CMakeLists.txt: fix architecture condit…  Anders Damsgaard
 (DIR) 2023-02-09 11:26  CMakeLists.txt: set ampere to default a…  Anders Damsgaard
 (DIR) 2023-02-09 11:26  CMakeLists.txt: add native support for …  Anders Damsgaard
 (DIR) 2022-04-18 11:04  deformationdepth.py: remove extra newli…  Anders Damsgaard
 (DIR) 2022-04-18 11:03  deformationdepth.py: tweak parameters f…  Anders Damsgaard
 (DIR) 2022-04-18 09:47  add restart test                          Anders Damsgaard
 (DIR) 2022-04-18 09:16  deformationdepth.py: import missing num…  Anders Damsgaard
 (DIR) 2022-04-17 08:41  deformationdepth.py: update to newer sp…  Anders Damsgaard
 (DIR) 2022-04-14 14:04  add script to test deformation depth wi…  Anders Damsgaard
 (DIR) 2022-04-14 14:02  disable rotation with fixvel=-10          Anders Damsgaard
 (DIR) 2022-04-14 13:24  do not download helper_math.h             Anders Damsgaard
 (DIR) 2022-04-05 19:26  add helper_math.h                         Anders Damsgaard
 (DIR) 2021-01-11 10:25  Revert "src/CMakeLists.txt: remove arch…  Anders Damsgaard
 (DIR) 2021-01-11 09:34  README.rst: add commsenv reference        Anders Damsgaard
 (DIR) 2021-01-11 09:30  src/CMakeLists.txt: remove arch and cod…  Anders Damsgaard
 (DIR) 2021-01-11 09:28  CMakeLists.txt: increase minimum requir…  Anders Damsgaard
 (DIR) 2021-01-11 09:24  LICENSE: bump year                        Anders Damsgaard
 (DIR) 2020-09-22 09:22  CMakeLists.txt: use own mirror of helpe…  Anders Damsgaard
 (DIR) 2020-05-12 08:25  Merge branch 'master' of src.adamsgaard…  Anders Damsgaard
 (DIR) 2020-05-12 08:24  Update hanzen-zoet experiments and resu…  Anders Damsgaard
 (DIR) 2019-12-09 07:04  Fix call to shear function                Anders Damsgaard
 (DIR) 2019-12-04 08:36  Add Dougal/Luke experiment script         Anders Damsgaard
 (DIR) 2019-11-26 19:47  Improve plot appearance and content       Anders Damsgaard
 (DIR) 2019-11-26 13:47  Improve plotting and reduce number of t…  Anders Damsgaard
 (DIR) 2019-11-26 10:42  Fix input and visualization issues        Anders Damsgaard
 (DIR) 2019-11-26 10:23  Plot timeseries of kinematic properties   Anders Damsgaard
 (DIR) 2019-11-21 15:33  Fix flux units in plot                    Anders Damsgaard
 (DIR) 2019-11-21 10:19  Calculate flux for supraglacial creep e…  Anders Damsgaard
 (DIR) 2019-11-04 08:59  Modify supraglacial script for zero flu…  Anders Damsgaard
 (DIR) 2019-11-04 08:59  Do not explicitly set GCC version         Anders Damsgaard
 (DIR) 2019-11-04 08:58  Visualize supraglacial plots without fl…  Anders Damsgaard
 (DIR) 2019-10-31 11:24  Fix write of Reynolds number in fluid-g…  Anders Damsgaard
 (DIR) 2019-10-10 11:28  Add supraglacial debris experiments       Anders Damsgaard
 (DIR) 2019-09-06 12:22  Drop .txt extension from LICENSE          Anders Damsgaard
 (DIR) 2019-09-02 13:31  Fix calculation of reynolds number and …  Anders Damsgaard
 (DIR) 2019-09-02 13:20  Fix continued line indentation            Anders Damsgaard
 (DIR) 2019-09-02 12:45  Perform many stylistic improvements bas…  Anders Damsgaard
 (DIR) 2019-09-02 09:30  Merge branch 'master' of gitlab.com:adm…  Anders Damsgaard
 (DIR) 2019-09-02 09:28  Update documentation, fix adjustWall do…  Anders Damsgaard
 (DIR) 2019-09-02 09:12  Only clean documentation output directo…  Anders Damsgaard
 (DIR) 2019-09-02 08:53  Update name and date                      Anders Damsgaard
 (DIR) 2019-09-02 08:50  Use snprintf over sprintf                 Anders Damsgaard
 (DIR) 2019-09-02 08:48  Use snprintf over sprintf                 Anders Damsgaard
 (DIR) 2019-09-02 08:06  Check if some output VTK file exist bef…  Anders Damsgaard
 (DIR) 2019-09-02 04:51  Fix ffmpeg arguments                      Anders Damsgaard
 (DIR) 2019-09-02 04:38  Use correct syntax when checking bools    Anders Damsgaard
 (DIR) 2019-09-02 04:35  Fix video functionality                   Anders Damsgaard
 (DIR) 2019-09-02 04:19  Use consistent format for function defi…  Anders Damsgaard
 (DIR) 2019-09-02 04:06  Matplotlib works as optional dependency…  Anders Damsgaard
 (DIR) 2019-08-22 09:06  Convert diagnostrics script to posix sh…  Anders Damsgaard
 (DIR) 2019-08-21 07:02  Disable wall viscosities by default       Anders Damsgaard
 (DIR) 2019-08-19 09:21  Update paraview custom filter             Anders Damsgaard
 (DIR) 2019-08-19 09:18  Add install note for vtk python module    Anders Damsgaard
 (DIR) 2019-08-15 14:43  Fix string split for python3              Anders Damsgaard
 (DIR) 2019-08-15 14:05  Fix scripts after changing np and nw to…  Anders Damsgaard
 (DIR) 2019-08-15 13:58  Fix py3 comparison between spherebin ob…  Anders Damsgaard
 (DIR) 2019-08-15 13:49  Begin implementing Python3 compability    Anders Damsgaard
 (DIR) 2019-04-27 12:27  Add support for CUDA compute capabiliti…  Anders Damsgaard
 (DIR) 2019-04-18 18:58  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2019-04-06 10:22  Spring cleaning: Remove old and unused …  Anders Damsgaard
 (DIR) 2018-04-13 16:01  Add options to smooth shear visualizati…  Anders Damsgaard
 (DIR) 2018-01-22 14:57  Add more grains and change length of co…  Anders Damsgaard
 (DIR) 2017-12-21 01:30  Add note on acknowledging sphere in pub…  Anders Damsgaard
 (DIR) 2017-12-21 01:28  Update publication list                   Anders Damsgaard
 (DIR) 2017-12-21 01:24  Set `nw` to int during `adjustUpperWall…  Anders Damsgaard
 (DIR) 2017-12-21 01:22  Update calls to `consolidate()` and `sh…  Anders Damsgaard
 (DIR) 2017-12-21 01:22  Add additional argument type enforcing    Anders Damsgaard
 (DIR) 2017-12-20 12:58  Add checkerboard colors, update status …  Anders Damsgaard
 (DIR) 2017-12-19 18:31  Decrease grain count, use log-normal PS…  Anders Damsgaard
 (DIR) 2017-12-19 18:25  Disable rendering, fix typos              Anders Damsgaard
 (DIR) 2017-12-19 18:24  Make sure np and nd are cast to ints      Anders Damsgaard
 (DIR) 2017-12-19 18:03  Add shear simulation with different ini…  Anders Damsgaard
 (DIR) 2017-10-28 16:52  add publicationt to README, add -fPIC t…  Anders Damsgaard
 (DIR) 2017-10-28 16:43  fix reStructuredText code block syntax    Anders Damsgaard
 (DIR) 2017-10-28 16:41  fix readability issue in README           Anders Damsgaard
 (DIR) 2017-10-18 13:28  fix comment for void ratio computation    Anders Damsgaard
 (DIR) 2017-09-08 18:55  remove tab characters                     Anders Damsgaard
 (DIR) 2017-09-08 14:29  update shear test example                 Anders Damsgaard
 (DIR) 2017-09-08 00:25  update documentation                      Anders Damsgaard
 (DIR) 2017-09-07 21:46  fix file path                             Anders Damsgaard
 (DIR) 2017-09-07 21:43  download helper_math.h from the net       Anders Damsgaard
 (DIR) 2017-09-07 20:09  rebuild documentation                     Anders Damsgaard
 (DIR) 2017-09-07 19:57  add note on clang-3.8 in README           Anders Damsgaard
 (DIR) 2017-09-07 19:54  fix various minor issues related to mem…  Anders Damsgaard
 (DIR) 2017-09-07 14:47  include string in header file             Anders Damsgaard
 (DIR) 2017-09-06 20:45  add -fPIC compiler flag                   Anders Damsgaard
 (DIR) 2017-09-06 20:33  set output path adequately                Anders Damsgaard
 (DIR) 2017-07-27 09:08  add script for J Glaciol manuscript       Anders Damsgaard
 (DIR) 2017-07-11 09:05  update contact information                Anders Damsgaard
 (DIR) 2017-06-20 01:13  fix additional problems with newest num…  Anders Damsgaard
 (DIR) 2017-06-19 23:54  fix problems in __init__ with newest nu…  Anders Damsgaard
 (DIR) 2017-06-02 18:04  add comment on how to visualize the for…  Anders Damsgaard
 (DIR) 2017-05-09 15:28  remove extra delta_t increase             Anders Damsgaard
 (DIR) 2017-02-23 23:05  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2017-02-23 23:04  add information on clusters               Anders Damsgaard
 (DIR) 2016-09-27 21:09  improve porosity estimation at top BC     Anders Damsgaard C…
 (DIR) 2016-09-20 16:57  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-09-20 16:56  fix function call                         Anders Damsgaard C…
 (DIR) 2016-09-13 16:59  fix density data type                     Anders Damsgaard C…
 (DIR) 2016-09-12 20:03  disable viscosities during consolidatio…  Anders Damsgaard C…
 (DIR) 2016-09-12 17:13  fix adaptive parameter type               Anders Damsgaard C…
 (DIR) 2016-09-12 16:43  fix rho data type                         Anders Damsgaard C…
 (DIR) 2016-09-09 23:06  decrease Young's modulus                  Anders Damsgaard C…
 (DIR) 2016-09-09 22:04  add fluid-creep experiment, add functio…  Anders Damsgaard C…
 (DIR) 2016-09-09 21:56  fix compressibility of water              Anders Damsgaard C…
 (DIR) 2016-09-09 19:53  add example values for Young's modulus    Anders Damsgaard C…
 (DIR) 2016-09-09 17:38  add test with adaptive fluid grid         Anders Damsgaard C…
 (DIR) 2016-09-09 17:16  fix wall indexation                       Anders Damsgaard C…
 (DIR) 2016-09-09 17:15  set total mass to equal grain mass duri…  Anders Damsgaard C…
 (DIR) 2016-09-08 20:47  fix grid height adaptation                Anders Damsgaard C…
 (DIR) 2016-09-02 22:45  add file I/O for readjusting the grid s…  Anders Damsgaard C…
 (DIR) 2016-09-02 22:39  implement first attempt at adaptive mes…  Anders Damsgaard C…
 (DIR) 2016-08-26 21:53  do not zero fluid-pressure gradient unl…  Anders Damsgaard C…
 (DIR) 2016-08-25 17:03  set dynamic wall mass to equal total gr…  Anders Damsgaard C…
 (DIR) 2016-08-24 18:39  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-08-24 18:23  only restrict f_p.z at top when there i…  Anders Damsgaard C…
 (DIR) 2016-08-16 19:45  decrease elastic stiffness for tests      Anders Damsgaard C…
 (DIR) 2016-08-16 19:12  add tests for contact model based on Yo…  Anders Damsgaard C…
 (DIR) 2016-08-16 19:10  report choice of contact stiffness mode…  Anders Damsgaard C…
 (DIR) 2016-08-16 18:56  fix minor implementation errors           Anders Damsgaard C…
 (DIR) 2016-08-16 18:52  use Youngs' modulus for scale-invariant…  Anders Damsgaard C…
 (DIR) 2016-08-12 20:59  complete test to verify horizontal pres…  Anders Damsgaard C…
 (DIR) 2016-08-12 20:18  change default side BC to periodic        Anders Damsgaard C…
 (DIR) 2016-08-12 20:04  set periodic as default lateral fluid BC  Anders Damsgaard C…
 (DIR) 2016-08-12 19:53  remove unused modules                     Anders Damsgaard C…
 (DIR) 2016-08-12 19:49  remove extra newlines                     Anders Damsgaard C…
 (DIR) 2016-08-12 19:43  only check particle positions when np>0   Anders Damsgaard C…
 (DIR) 2016-08-12 18:49  delete extra read                         Anders Damsgaard C…
 (DIR) 2016-08-12 18:45  print parameter name in comparison outp…  Anders Damsgaard C…
 (DIR) 2016-08-12 18:36  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-08-12 18:35  bugfixes                                  Anders Damsgaard C…
 (DIR) 2016-08-12 17:47  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-08-12 17:46  add test for fixed pressure BCs at X      Anders Damsgaard C…
 (DIR) 2016-08-11 23:01  add BC parameter to file/data structure…  Anders Damsgaard C…
 (DIR) 2016-08-11 18:50  pass new BC flags to cuda kernels         Anders Damsgaard C…
 (DIR) 2016-08-11 18:43  add Neumann BCs to iterative solution     Anders Damsgaard C…
 (DIR) 2016-08-11 18:39  add Neumann BC at side boundaries         Anders Damsgaard C…
 (DIR) 2016-08-11 18:36  add dirichlet BC for xy boundaries in D…  Anders Damsgaard C…
 (DIR) 2016-08-11 17:56  begin implementation of non-periodic x/…  Anders Damsgaard C…
 (DIR) 2016-06-17 16:51  add rs2 experiment generation script      Anders Damsgaard C…
 (DIR) 2016-06-17 16:46  delay velocity step 5s                    Anders Damsgaard C…
 (DIR) 2016-06-16 21:51  improve rate-state visualization          Anders Damsgaard C…
 (DIR) 2016-06-16 17:43  add script to visualize rs0 output        Anders Damsgaard C…
 (DIR) 2016-06-16 17:43  fix jobname prefix usage                  Anders Damsgaard C…
 (DIR) 2016-06-16 01:16  change domain size to equal other simul…  Anders Damsgaard C…
 (DIR) 2016-06-16 01:14  change particle count                     Anders Damsgaard C…
 (DIR) 2016-06-16 01:10  change world size, particle number, add…  Anders Damsgaard C…
 (DIR) 2016-06-16 00:30  add initialization and consolidation sc…  Anders Damsgaard C…
 (DIR) 2016-06-15 23:05  add fix for elevated porosities at fric…  Anders Damsgaard C…
 (DIR) 2016-06-15 22:41  revert to previous logic                  Anders Damsgaard C…
 (DIR) 2016-06-15 22:03  use dedicated function during porosity …  Anders Damsgaard C…
 (DIR) 2016-06-15 21:45  mirror particle grid for porosity estim…  Anders Damsgaard C…
 (DIR) 2016-06-14 14:45  add new rate-state generation script      Anders Damsgaard C…
 (DIR) 2016-06-13 16:17  decrease damping                          Anders Damsgaard
 (DIR) 2016-06-10 17:48  add function for total grain mass, add …  Anders Damsgaard C…
 (DIR) 2016-06-06 18:28  add script for faster high shear-strain…  Anders Damsgaard
 (DIR) 2016-06-04 23:46  fix cons simulation name                  Anders Damsgaard C…
 (DIR) 2016-06-04 23:42  read correct consolidation input          Anders Damsgaard C…
 (DIR) 2016-06-04 23:30  fix ref to effective stress               Anders Damsgaard C…
 (DIR) 2016-06-04 19:02  run on device 0                           Anders Damsgaard C…
 (DIR) 2016-06-04 18:55  add string delimiters to ID calls         Anders Damsgaard C…
 (DIR) 2016-06-04 15:13  add initialized packing of 10,000 parti…  Anders Damsgaard C…
 (DIR) 2016-06-04 15:11  add script for generating various preco…  Anders Damsgaard C…
 (DIR) 2016-06-04 15:11  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-06-04 15:10  fix function calls                        Anders Damsgaard C…
 (DIR) 2016-06-02 22:56  generate python and slurm scripts         Anders Damsgaard C…
 (DIR) 2016-06-02 22:19  add preliminary job generation script     Anders Damsgaard C…
 (DIR) 2016-04-25 18:00  add new initialized particle cube         Anders Damsgaard C…
 (DIR) 2016-04-13 16:54  revert rate-state.py to orig, add new s…  Anders Damsgaard
 (DIR) 2016-04-13 16:53  increase shear velocity tenfold           Anders Damsgaard
 (DIR) 2016-04-08 19:38  increase velocity step factor to 10x      Anders Damsgaard
 (DIR) 2016-04-04 17:09  use cubic particle assemblage             Anders Damsgaard
 (DIR) 2016-04-04 16:43  fix velocity stepping                     Anders Damsgaard
 (DIR) 2016-04-01 16:52  increaste stiffness                       Anders Damsgaard
 (DIR) 2016-03-31 22:17  shorter simulation id for dry experimen…  Anders Damsgaard
 (DIR) 2016-03-31 22:16  change simulation id                      Anders Damsgaard
 (DIR) 2016-03-31 22:14  fix shear function call                   Anders Damsgaard
 (DIR) 2016-03-31 22:14  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2016-03-31 22:13  reduce N in channel experiment            Anders Damsgaard
 (DIR) 2016-03-05 17:22  fix effective stress magnitude in simul…  Anders Damsgaard
 (DIR) 2016-03-05 17:21  update figures for paper 3                Anders Damsgaard
 (DIR) 2016-03-05 17:21  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2016-03-05 17:21  add channel script                        Anders Damsgaard
 (DIR) 2016-02-26 19:03  improve fluid debugging output            Anders Damsgaard
 (DIR) 2016-02-25 23:42  also zero forces and torques, change fi…  Anders Damsgaard
 (DIR) 2016-02-16 18:20  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2016-02-16 18:20  remove specific call to gcc-4.6           Anders Damsgaard
 (DIR) 2016-02-09 23:29  add TCD publication info                  Anders Damsgaard
 (DIR) 2016-01-26 22:57  do not remove NS values when Darcian fl…  Anders Damsgaard
 (DIR) 2015-12-04 18:02  increase size of arrays                   Anders Damsgaard
 (DIR) 2015-09-25 09:07  add flux BC test                          Anders Damsgaard
 (DIR) 2015-09-23 08:10  fix compatibility with VTK 6              Anders Damsgaard
 (DIR) 2015-09-06 06:52  fix typo                                  Anders Damsgaard
 (DIR) 2015-09-06 06:51  add ref to tcd                            Anders Damsgaard
 (DIR) 2015-09-06 06:48  add note on cuda 7                        Anders Damsgaard
 (DIR) 2015-09-06 06:47  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2015-09-06 06:46  update readme                             Anders Damsgaard
 (DIR) 2015-06-16 07:18  fix visualization call                    Anders Damsgaard
 (DIR) 2015-06-16 07:09  update plots                              Anders Damsgaard
 (DIR) 2015-05-29 13:40  finish figure 3                           Anders Damsgaard
 (DIR) 2015-05-29 09:29  modify script for high N simulation       Anders Damsgaard
 (DIR) 2015-05-29 04:57  Removed erroneous character, thanks Eli!  Anders Damsgaard
 (DIR) 2015-05-27 13:42  improve combined plots                    Anders Damsgaard
 (DIR) 2015-05-25 14:31  add permeable variable shear rate exper…  Anders Damsgaard
 (DIR) 2015-05-25 13:03  add script to continue slow simulations   Anders Damsgaard
 (DIR) 2015-05-25 12:51  remove blank line, add slow shear exper…  Anders Damsgaard
 (DIR) 2015-05-21 14:25  add particle indexes to forcechain outp…  Anders Damsgaard
 (DIR) 2015-05-20 07:31  extend wip-varA2 simulations              Anders Damsgaard
 (DIR) 2015-05-20 07:29  update visualization calls                Anders Damsgaard
 (DIR) 2015-05-20 07:27  update initGridPos call                   Anders Damsgaard
 (DIR) 2015-05-20 07:25  update plots, shear test script           Anders Damsgaard
 (DIR) 2015-05-18 14:05  fix force chain axis limits               Anders Damsgaard
 (DIR) 2015-05-18 13:43  fix matplotlib call                       Anders Damsgaard
 (DIR) 2015-05-18 13:38  * python/sphere.py: add force chain plo…  Anders Damsgaard
 (DIR) 2015-05-18 12:18  add plot of contact angles                Anders Damsgaard
 (DIR) 2015-05-18 11:17  update histogram to log, plot creep sna…  Anders Damsgaard
 (DIR) 2015-05-18 09:57  add histograms to plotContacts            Anders Damsgaard
 (DIR) 2015-05-15 18:35  modify plotContacts to optional data ou…  Anders Damsgaard
 (DIR) 2015-05-15 11:06  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2015-05-15 11:06  add new wip sims                          Anders Damsgaard
 (DIR) 2015-05-14 18:13  fix xyzsum name                           Anders Damsgaard
 (DIR) 2015-05-14 17:52  add spatial scaling function              Anders Damsgaard
 (DIR) 2015-05-13 11:35  remove redundant whitespace               Anders Damsgaard
 (DIR) 2015-05-13 11:35  fix sids                                  Anders Damsgaard
 (DIR) 2015-05-12 19:22  fix order of matplotlib settings          Anders Damsgaard
 (DIR) 2015-05-12 19:18  fix order of matplotlib cmds              Anders Damsgaard
 (DIR) 2015-05-12 19:14  change default text size                  Anders Damsgaard
 (DIR) 2015-05-12 16:45  add original script                       Anders Damsgaard
 (DIR) 2015-05-11 08:43  extend simulation time                    Anders Damsgaard
 (DIR) 2015-05-11 08:42  extend simulation time                    Anders Damsgaard
 (DIR) 2015-05-06 12:52  Merge pull request #9 from gitter-badge…  Anders Damsgaard
 (DIR) 2015-05-06 12:22  change order of plots                     Anders Damsgaard
 (DIR) 2015-05-06 12:18  add shear strain figure with different …  Anders Damsgaard
 (DIR) 2015-05-06 11:38  improve shear strain legend text, fix f…  Anders Damsgaard
 (DIR) 2015-05-05 19:07  add extra simulations with larger A val…  Anders Damsgaard
 (DIR) 2015-04-28 13:27  fix simulation names                      Anders Damsgaard
 (DIR) 2015-04-24 00:03  add function for particle surface area    Anders Damsgaard
 (DIR) 2015-04-23 22:34  fix filename syntax                       Anders Damsgaard
 (DIR) 2015-04-23 20:30  add figures from simulations with N=80 …  Anders Damsgaard
 (DIR) 2015-04-23 16:54  fix amplitudes, add continue script       Anders Damsgaard
 (DIR) 2015-04-23 16:43  test different oscillation amplitudes     Anders Damsgaard
 (DIR) 2015-04-17 12:37  adjust smoothing plot                     Anders Damsgaard
 (DIR) 2015-04-17 12:36  don't plot last part of smoothed signal   Anders Damsgaard
 (DIR) 2015-04-16 11:47  add missing simulation starter script     Anders Damsgaard
 (DIR) 2015-04-16 11:18  fox filenames                             Anders Damsgaard
 (DIR) 2015-04-16 11:07  improve plot                              Anders Damsgaard
 (DIR) 2015-04-16 11:07  add shear tests with neumann bc on top    Anders Damsgaard
 (DIR) 2015-04-16 09:48  improve internals plot                    Anders Damsgaard
 (DIR) 2015-04-16 08:29  add colormap parameter                    Anders Damsgaard
 (DIR) 2015-04-16 08:05  hide filename output                      Anders Damsgaard
 (DIR) 2015-04-16 07:59  disable debug output                      Anders Damsgaard
 (DIR) 2015-04-16 07:59  add script to batch generate fluid pres…  Anders Damsgaard
 (DIR) 2015-04-16 07:58  add figsize parameter                     Anders Damsgaard
 (DIR) 2015-04-15 08:47  fix wrong permeabilities in continue sc…  Anders Damsgaard
 (DIR) 2015-04-15 08:32  added simulations for N=80kPa, decrease…  Anders Damsgaard
 (DIR) 2015-04-14 19:24  abbreviate intermediate                   Anders Damsgaard
 (DIR) 2015-04-14 19:21  add grid lines                            Anders Damsgaard
 (DIR) 2015-04-14 19:11  fix file name                             Anders Damsgaard
 (DIR) 2015-04-14 19:01  increase smoothing window                 Anders Damsgaard
 (DIR) 2015-04-14 18:58  change color of unsmoothed friction       Anders Damsgaard
 (DIR) 2015-04-14 18:56  change color of unsmoothed friction plot  Anders Damsgaard
 (DIR) 2015-04-14 18:54  allow the unsmoothed plot to go outside…  Anders Damsgaard
 (DIR) 2015-04-14 18:49  use hanning smoothing, widen smoothing …  Anders Damsgaard
 (DIR) 2015-04-14 18:03  improved figure                           Anders Damsgaard
 (DIR) 2015-04-14 18:02  remove grid lines                         Anders Damsgaard
 (DIR) 2015-04-14 17:47  improve stress plot w different permeab…  Anders Damsgaard
 (DIR) 2015-04-14 14:10  improve fluid plot                        Anders Damsgaard
 (DIR) 2015-04-14 14:02  improve friction,dilation,pressure vs r…  Anders Damsgaard
 (DIR) 2015-04-14 12:59  use seaborn to improve figures            Anders Damsgaard
 (DIR) 2015-04-14 11:04  improve shear strain plot                 Anders Damsgaard
 (DIR) 2015-04-14 09:34  add custom colormap                       Anders Damsgaard
 (DIR) 2015-04-13 12:16  added script to continue viscosity scal…  Anders Damsgaard
 (DIR) 2015-04-13 12:11  add more simulations with different vis…  Anders Damsgaard
 (DIR) 2015-04-10 12:05  do not categorize contacts between fixe…  Anders Damsgaard
 (DIR) 2015-04-10 11:28  fix animation call                        Anders Damsgaard
 (DIR) 2015-04-09 14:22  disable test data                         Anders Damsgaard
 (DIR) 2015-04-09 14:21  fix contact plot                          Anders Damsgaard
 (DIR) 2015-04-09 13:47  improve plot title                        Anders Damsgaard
 (DIR) 2015-04-09 09:15  close figures in order to avoid large m…  Anders Damsgaard
 (DIR) 2015-04-08 13:39  add format cmd                            Anders Damsgaard
 (DIR) 2015-04-08 13:31  add plotContacts and visualize('contact…  Anders Damsgaard
 (DIR) 2015-04-08 09:53  do not artificially increase porosity a…  Anders Damsgaard
 (DIR) 2015-03-31 11:25  set porosity ghost nodes                  Anders Damsgaard
 (DIR) 2015-03-31 11:22  implemented correction for spatial adve…  Anders Damsgaard
 (DIR) 2015-03-24 09:23  narrow porosity limits                    Anders Damsgaard
 (DIR) 2015-03-24 08:42  remove old end comment                    Anders Damsgaard
 (DIR) 2015-03-24 08:41  only find porosity in cfd time steps      Anders Damsgaard
 (DIR) 2015-03-24 08:40  use linear porosity estimation method     Anders Damsgaard
 (DIR) 2015-03-24 08:16  revert to porosity change forcing, keep…  Anders Damsgaard
 (DIR) 2015-03-23 13:21  fix neighbor cell indexes                 Anders Damsgaard
 (DIR) 2015-03-23 11:38  find porosities before pressure force     Anders Damsgaard
 (DIR) 2015-03-23 10:10  fix particle velocity divergence functi…  Anders Damsgaard
 (DIR) 2015-03-20 14:34  use local neighbor cell center coordina…  Anders Damsgaard
 (DIR) 2015-03-20 13:12  disable diagnostic output, decrease max…  Anders Damsgaard
 (DIR) 2015-03-20 13:10  disable diagnostic output                 Anders Damsgaard
 (DIR) 2015-03-20 13:10  improve formatting                        Anders Damsgaard
 (DIR) 2015-03-20 13:09  add grid dimensions to registers          Anders Damsgaard
 (DIR) 2015-03-20 12:56  do not read gradient values at ghost no…  Anders Damsgaard
 (DIR) 2015-03-20 10:40  change sign on every 2nd value            Anders Damsgaard
 (DIR) 2015-03-20 10:40  decrease factor to be added               Anders Damsgaard
 (DIR) 2015-03-20 10:32  refine test                               Anders Damsgaard
 (DIR) 2015-03-20 10:31  update fluid interaction test             Anders Damsgaard
 (DIR) 2015-03-20 10:25  disable debug information                 Anders Damsgaard
 (DIR) 2015-03-20 09:22  various fixes                             Anders Damsgaard
 (DIR) 2015-03-20 09:08  add pressure gradient array               Anders Damsgaard
 (DIR) 2015-03-20 08:33  remove old, commented code                Anders Damsgaard
 (DIR) 2015-03-20 08:32  iterate over 27 closest cells             Anders Damsgaard
 (DIR) 2015-03-19 18:49  disable debug output                      Anders Damsgaard
 (DIR) 2015-03-19 18:49  avoid division by zero                    Anders Damsgaard
 (DIR) 2015-03-19 15:34  small bugfixes                            Anders Damsgaard
 (DIR) 2015-03-19 15:32  use linear and staggered force interpol…  Anders Damsgaard
 (DIR) 2015-03-19 15:16  use particle velocity divergence as for…  Anders Damsgaard
 (DIR) 2015-03-19 14:45  find particle velocity divergence with …  Anders Damsgaard
 (DIR) 2015-03-19 12:46  fix distance calculation                  Anders Damsgaard
 (DIR) 2015-03-19 12:21  add sphere volume device function and l…  Anders Damsgaard
 (DIR) 2015-03-17 11:58  add cyclic impermeable experiment, chan…  Anders Damsgaard
 (DIR) 2015-03-12 20:56  revert to blues colorscheme               Anders Damsgaard
 (DIR) 2015-03-12 20:55  do not plot by default                    Anders Damsgaard
 (DIR) 2015-03-12 20:50  do not plot by default                    Anders Damsgaard
 (DIR) 2015-03-12 19:25  show velocity instead of porosity, read…  Anders Damsgaard
 (DIR) 2015-03-12 19:04  add various displacement types            Anders Damsgaard
 (DIR) 2015-03-12 14:49  add script to continue simulations        Anders Damsgaard
 (DIR) 2015-03-12 14:46  added script for cyclic experiments on …  Anders Damsgaard
 (DIR) 2015-03-12 14:31  fix velocity limit                        Anders Damsgaard
 (DIR) 2015-03-04 09:49  remove redundant lines                    Anders Damsgaard
 (DIR) 2015-03-03 14:27  save stresses as cell data, add firstst…  Anders Damsgaard
 (DIR) 2015-03-02 14:06  remove trailing zero                      Anders Damsgaard
 (DIR) 2015-03-02 13:22  add plot of rate vs. dilation             Anders Damsgaard
 (DIR) 2015-03-02 12:30  remove typo                               Anders Damsgaard
 (DIR) 2015-03-02 12:29  use current value instead of defined no…  Anders Damsgaard
 (DIR) 2015-03-02 12:24  add plot of inertia parameter             Anders Damsgaard
 (DIR) 2015-03-02 12:15  shearVel as alias of shearVelocity        Anders Damsgaard
 (DIR) 2015-02-27 11:20  improve readTime function                 Anders Damsgaard
 (DIR) 2015-02-27 10:42  added function to read a specified time   Anders Damsgaard
 (DIR) 2015-02-26 09:35  add additional fit                        Anders Damsgaard
 (DIR) 2015-02-25 14:44  remove temporary underrelaxation scaling  Anders Damsgaard
 (DIR) 2015-02-25 09:50  add script to show and fit stress-strai…  Anders Damsgaard
 (DIR) 2015-02-25 09:38  copy file to article graphics folder      Anders Damsgaard
 (DIR) 2015-02-25 09:26  add global lienwidth parameter            Anders Damsgaard
 (DIR) 2015-02-24 20:10  set label color accordingly               Anders Damsgaard
 (DIR) 2015-02-24 19:56  add scripts for new figures               Anders Damsgaard
 (DIR) 2015-02-24 12:02  refer to correct object                   Anders Damsgaard
 (DIR) 2015-02-24 12:01  only use x-axis force component           Anders Damsgaard
 (DIR) 2015-02-24 10:09  add function to return current shear ve…  Anders Damsgaard
 (DIR) 2015-02-24 10:00  add function to find cell index of wall…  Anders Damsgaard
 (DIR) 2015-02-24 09:51  improve functionality for determining s…  Anders Damsgaard
 (DIR) 2015-02-24 09:49  raise exception if unknown type is spec…  Anders Damsgaard
 (DIR) 2015-02-24 09:48  add option to return either defined or …  Anders Damsgaard
 (DIR) 2015-02-23 09:40  add force chain statistics script         Anders Damsgaard
 (DIR) 2015-02-23 09:04  add thin border to dots                   Anders Damsgaard
 (DIR) 2015-02-20 14:50  add functions to calculate coordination…  Anders Damsgaard
 (DIR) 2015-02-20 13:19  add function to visualize particles dir…  Anders Damsgaard
 (DIR) 2015-02-20 10:54  add parameters to docstring               Anders Damsgaard
 (DIR) 2015-02-20 10:47  optionally write contact force VTK files  Anders Damsgaard
 (DIR) 2015-02-20 10:41  add function to visualize force chains    Anders Damsgaard
 (DIR) 2015-02-20 08:08  add function to find loaded contacts      Anders Damsgaard
 (DIR) 2015-02-19 13:04  fix sign issue in contact area computat…  Anders Damsgaard
 (DIR) 2015-02-19 12:48  contact area instead of contact radius    Anders Damsgaard
 (DIR) 2015-02-19 12:46  remove redundant newline                  Anders Damsgaard
 (DIR) 2015-02-19 12:45  add functions to find contact areas and…  Anders Damsgaard
 (DIR) 2015-02-18 10:17  remove redundant parantheses              Anders Damsgaard
 (DIR) 2015-02-18 08:48  add function to input/output current si…  Anders Damsgaard
 (DIR) 2015-02-18 08:16  remove abundant newlines                  Anders Damsgaard
 (DIR) 2015-02-17 13:44  choose better colormap, decrease height…  Anders Damsgaard
 (DIR) 2015-02-17 13:29  improve shearStrainRate function, use s…  Anders Damsgaard
 (DIR) 2015-02-17 13:24  improve shearStrain function              Anders Damsgaard
 (DIR) 2015-02-17 12:45  add colored dots to visualize progressi…  Anders Damsgaard
 (DIR) 2015-02-17 12:06  add method to visualize sediment rate d…  Anders Damsgaard
 (DIR) 2015-02-17 11:33  refer to self                             Anders Damsgaard
 (DIR) 2015-02-17 11:32  refer to self                             Anders Damsgaard
 (DIR) 2015-02-16 12:49  add timefactor to fluid viscosity         Anders Damsgaard
 (DIR) 2015-02-16 12:21  adjust xlimits in plots                   Anders Damsgaard
 (DIR) 2015-02-13 14:05  add time factor                           Anders Damsgaard
 (DIR) 2015-02-11 14:11  switch device and fluid parameter place…  Anders Damsgaard
 (DIR) 2015-02-10 20:46  add shading during stick periods          Anders Damsgaard
 (DIR) 2015-02-10 20:08  fix typo                                  Anders Damsgaard
 (DIR) 2015-02-10 19:59  enable grids                              Anders Damsgaard
 (DIR) 2015-02-10 19:58  remove xticks on middle plot              Anders Damsgaard
 (DIR) 2015-02-10 19:52  refer to correct velocity array           Anders Damsgaard
 (DIR) 2015-02-10 19:36  add plot with shear velocities            Anders Damsgaard
 (DIR) 2015-02-10 07:57  add new sim, change appearance of shear…  Anders Damsgaard
 (DIR) 2015-02-09 14:29  permeability BC suitable for shear stre…  Anders Damsgaard
 (DIR) 2015-02-09 13:18  fix x axis limits                         Anders Damsgaard
 (DIR) 2015-02-09 13:17  remove odd multiplication                 Anders Damsgaard
 (DIR) 2015-02-09 13:14  add x axis limits to visualize function   Anders Damsgaard
 (DIR) 2015-02-06 10:22  remove debug output                       Anders Damsgaard
 (DIR) 2015-02-06 10:12  disable legends in two lower plots        Anders Damsgaard
 (DIR) 2015-02-06 10:01  add script to plot macroscopic properti…  Anders Damsgaard
 (DIR) 2015-02-06 09:46  increase width of energy plots            Anders Damsgaard
 (DIR) 2015-02-04 15:03  extend dirichlet BC one cell further do…  Anders Damsgaard
 (DIR) 2015-02-02 14:02  return as scalar                          Anders Damsgaard
 (DIR) 2015-02-02 14:02  return result                             Anders Damsgaard
 (DIR) 2015-02-02 14:02  improve permeability estimation function  Anders Damsgaard
 (DIR) 2015-02-02 13:57  return and store values                   Anders Damsgaard
 (DIR) 2015-01-31 09:27  add transparancy to shear-displacement …  Anders Damsgaard
 (DIR) 2015-01-31 09:22  change color of shear stress              Anders Damsgaard
 (DIR) 2015-01-31 09:20  plot sigma0, fix currentNormalStress fu…  Anders Damsgaard
 (DIR) 2015-01-31 09:09  add fluid forcing to plot                 Anders Damsgaard
 (DIR) 2015-01-30 10:41  improved color bar range                  Anders Damsgaard
 (DIR) 2015-01-30 10:25  add visualization method for porosities   Anders Damsgaard
 (DIR) 2015-01-28 13:48  rename color to Type color in order to …  Anders Damsgaard
 (DIR) 2015-01-27 12:38  added optional dump of figure to pickle   Anders Damsgaard
 (DIR) 2015-01-27 12:25  read correct objects                      Anders Damsgaard
 (DIR) 2015-01-27 11:11  refer to previously read object           Anders Damsgaard
 (DIR) 2015-01-27 10:50  improve plot layout                       Anders Damsgaard
 (DIR) 2015-01-27 10:19  check wmode in sb object                  Anders Damsgaard
 (DIR) 2015-01-27 08:29  fluid modulation 180 phase shifted        Anders Damsgaard
 (DIR) 2015-01-27 08:04  phase shift is in radians                 Anders Damsgaard
 (DIR) 2015-01-23 10:46  fix x axis limits                         Anders Damsgaard
 (DIR) 2015-01-23 10:09  refer to correct parameter                Anders Damsgaard
 (DIR) 2015-01-23 09:24  read modulation from current object ins…  Anders Damsgaard
 (DIR) 2015-01-23 08:44  update label conditional                  Anders Damsgaard
 (DIR) 2015-01-23 08:43  use time as x axis if experiment is str…  Anders Damsgaard
 (DIR) 2015-01-23 08:31  rearrange profiling call                  Anders Damsgaard
 (DIR) 2015-01-23 08:30  determine initial fluid pressure at sta…  Anders Damsgaard
 (DIR) 2015-01-22 14:12  allow propagation of top wall fluid pre…  Anders Damsgaard
 (DIR) 2015-01-22 11:37  use a single legend                       Anders Damsgaard
 (DIR) 2015-01-22 09:34  close figures after plotting              Anders Damsgaard
 (DIR) 2015-01-22 09:30  change line styles                        Anders Damsgaard
 (DIR) 2015-01-22 09:16  add missing }                             Anders Damsgaard
 (DIR) 2015-01-22 09:03  remove commented lines                    Anders Damsgaard
 (DIR) 2015-01-22 09:00  move dp=0 one iz upwards, may change pr…  Anders Damsgaard
 (DIR) 2015-01-22 08:44  return as scalar                          Anders Damsgaard
 (DIR) 2015-01-22 08:42  different plot when normal stress is mo…  Anders Damsgaard
 (DIR) 2015-01-21 11:41  improve plot geometry                     Anders Damsgaard
 (DIR) 2015-01-21 11:40  show pressure in Pascal                   Anders Damsgaard
 (DIR) 2015-01-21 11:39  add base value to plot. call modulation…  Anders Damsgaard
 (DIR) 2015-01-21 10:40  assign values to correct variables        Anders Damsgaard
 (DIR) 2015-01-21 10:39  added script for simulations with modul…  Anders Damsgaard
 (DIR) 2015-01-20 10:51  add grid by default                       Anders Damsgaard
 (DIR) 2015-01-20 10:51  add plot style parameter                  Anders Damsgaard
 (DIR) 2015-01-20 10:48  specify parameter type                    Anders Damsgaard
 (DIR) 2015-01-20 10:44  plot pressure values in kPa               Anders Damsgaard
 (DIR) 2015-01-20 10:41  add baseval value and close plot          Anders Damsgaard
 (DIR) 2015-01-20 09:59  add plot parameter                        Anders Damsgaard
 (DIR) 2015-01-20 09:38  add function to plot modulation           Anders Damsgaard
 (DIR) 2015-01-20 08:37  add cross references in docstrings        Anders Damsgaard
 (DIR) 2015-01-20 08:36  add functions for setting sigma0 fluctu…  Anders Damsgaard
 (DIR) 2015-01-19 10:29  change second line color to blue          Anders Damsgaard
 (DIR) 2015-01-19 10:27  color y axis ticks                        Anders Damsgaard
 (DIR) 2015-01-19 10:26  fix line and axis colors                  Anders Damsgaard
 (DIR) 2015-01-19 10:20  print filename when saving figure in vi…  Anders Damsgaard
 (DIR) 2015-01-19 09:10  fix indentation                           Anders Damsgaard
 (DIR) 2015-01-19 09:10  added function to modulate fluid pressu…  Anders Damsgaard
 (DIR) 2015-01-19 08:58  fix typo                                  Anders Damsgaard
 (DIR) 2015-01-19 08:57  add dirichlet BC fix for top wall for d…  Anders Damsgaard
 (DIR) 2015-01-19 08:55  fix dirichlet bc at dynamic top wall      Anders Damsgaard
 (DIR) 2015-01-19 08:41  top wall bc set by wmode not bc_top       Anders Damsgaard
 (DIR) 2015-01-19 08:31  enforce dirichlet pressure BC when bc_t…  Anders Damsgaard
 (DIR) 2015-01-16 13:41  remove grid for shared x-axis             Anders Damsgaard
 (DIR) 2015-01-15 14:58  add scripts to continue simulations aft…  Anders Damsgaard
 (DIR) 2015-01-15 14:50  add scripts to run shear stress experim…  Anders Damsgaard
 (DIR) 2015-01-15 12:48  modify line colors                        Anders Damsgaard
 (DIR) 2015-01-15 12:47  fix fluid pressure plotting               Anders Damsgaard
 (DIR) 2015-01-15 09:51  Add method to visualize shear-displacem…  Anders Damsgaard
 (DIR) 2015-01-14 14:15  describe shear stress boundary condition  Anders Damsgaard
 (DIR) 2015-01-14 14:06  modulate fluid pressure at top wall       Anders Damsgaard
 (DIR) 2015-01-14 14:00  expand shear() to setup stress-controll…  Anders Damsgaard
 (DIR) 2015-01-14 13:53  add else clause for old files             Anders Damsgaard
 (DIR) 2015-01-14 13:18  topy                                      Anders Damsgaard
 (DIR) 2015-01-14 13:17  add conference presentations              Anders Damsgaard
 (DIR) 2015-01-14 13:05  add note on particles who are not part …  Anders Damsgaard
 (DIR) 2015-01-14 12:57  fix syntax                                Anders Damsgaard
 (DIR) 2015-01-14 12:54  implement shear stress BC                 Anders Damsgaard
 (DIR) 2015-01-14 12:39  incorporate shear stress BC in integrat…  Anders Damsgaard
 (DIR) 2015-01-14 12:22  reformulate comment                       Anders Damsgaard
 (DIR) 2015-01-14 12:21  renamed tau_eff to tau_eff_x to reflect…  Anders Damsgaard
 (DIR) 2015-01-14 11:22  rename wall shear stress from tau to ta…  Anders Damsgaard
 (DIR) 2015-01-14 09:04  add linear array of wall shear stresses   Anders Damsgaard
 (DIR) 2015-01-14 09:00  add wall shear stress parameter           Anders Damsgaard
 (DIR) 2015-01-14 08:44  version no in separate file, rename dev…  Anders Damsgaard
 (DIR) 2015-01-14 08:38  rename devs to sigma0                     Anders Damsgaard
 (DIR) 2015-01-13 08:27  add a few files                           Anders Damsgaard
 (DIR) 2015-01-12 12:36  noflow BC at dynamic top wall if bc_top…  Anders Damsgaard
 (DIR) 2015-01-12 12:35  improve plot appearance                   Anders Damsgaard
 (DIR) 2015-01-09 14:08  change default color map                  Anders Damsgaard
 (DIR) 2015-01-09 14:06  improve 'fluid-pressure' visualization    Anders Damsgaard
 (DIR) 2015-01-09 13:37  improve 'fluid-pressure' visualization …  Anders Damsgaard
 (DIR) 2015-01-09 12:56  do not raise exception if radii can be …  Anders Damsgaard
 (DIR) 2015-01-09 12:51  read first input file if no information…  Anders Damsgaard
 (DIR) 2015-01-08 13:34  add fluid pressure plotting functions     Anders Damsgaard
 (DIR) 2015-01-07 12:35  disable Dirichlet at top wall             Anders Damsgaard
 (DIR) 2015-01-07 12:31  fix ghost node set                        Anders Damsgaard
 (DIR) 2015-01-07 10:42  fix non-Dirichlet BC solution             Anders Damsgaard
 (DIR) 2015-01-07 10:39  Use custom ranges for simulations, chan…  Anders Damsgaard
 (DIR) 2015-01-06 11:27  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2015-01-06 11:27  update script to visualize internal val…  Anders Damsgaard
 (DIR) 2014-12-28 17:26  added experimental fft analysis           Anders Damsgaard
 (DIR) 2014-12-22 14:08  update paths to osx                       Anders Damsgaard
 (DIR) 2014-12-22 14:04  change legend text                        Anders Damsgaard
 (DIR) 2014-12-02 08:50  add units to particle vtk files           Anders Damsgaard
 (DIR) 2014-11-27 19:47  reenable shearing motion                  Anders Damsgaard
 (DIR) 2014-11-27 09:24  extend dirichlet BC to one cell beneath…  Anders Damsgaard
 (DIR) 2014-11-27 08:36  extend top BC in pressure force one cel…  Anders Damsgaard
 (DIR) 2014-11-26 13:55  remove neumann BC at top wall             Anders Damsgaard
 (DIR) 2014-11-26 10:37  fix conditional statement                 Anders Damsgaard
 (DIR) 2014-11-26 10:34  disregard backward euler estimate in fi…  Anders Damsgaard
 (DIR) 2014-11-26 10:31  use central differences for porosity ch…  Anders Damsgaard
 (DIR) 2014-11-26 08:41  approximate porosity change by forward …  Anders Damsgaard
 (DIR) 2014-11-24 13:52  dphi should be 0 in first iteration       Anders Damsgaard
 (DIR) 2014-11-24 13:44  add docstring on verbose flag             Anders Damsgaard
 (DIR) 2014-11-24 13:43  revert to old limits for phi, add verbo…  Anders Damsgaard
 (DIR) 2014-11-24 13:39  new phi boundaries                        Anders Damsgaard
 (DIR) 2014-11-24 13:36  disable output in porosity calculations   Anders Damsgaard
 (DIR) 2014-11-24 13:35  set dphi after div_v_p                    Anders Damsgaard
 (DIR) 2014-11-24 13:30  fix periodic boundaries when determinin…  Anders Damsgaard
 (DIR) 2014-11-24 11:01  fix sign error in velocity divergence t…  Anders Damsgaard
 (DIR) 2014-11-20 10:43  use particle velocity divergence as flu…  Anders Damsgaard
 (DIR) 2014-11-19 12:54  change pressure force to fit with Navie…  Anders Damsgaard
 (DIR) 2014-11-19 11:18  use fluid density from cpu struct         Anders Damsgaard
 (DIR) 2014-11-19 11:17  add bouyancy to particles in darcy solv…  Anders Damsgaard
 (DIR) 2014-11-18 09:35  extend f_p.z=0 one cell downwards         Anders Damsgaard
 (DIR) 2014-11-17 10:26  added scripts to resume simulations       Anders Damsgaard
 (DIR) 2014-11-17 10:15  add missing pressure read                 Anders Damsgaard
 (DIR) 2014-11-17 10:14  refine top fluid gradient bc              Anders Damsgaard
 (DIR) 2014-11-17 10:12  add scripts to perform shear experiment…  Anders Damsgaard
 (DIR) 2014-11-17 09:47  add velocity scaling factor               Anders Damsgaard
 (DIR) 2014-11-17 09:29  disable unused read                       Anders Damsgaard
 (DIR) 2014-11-17 09:28  disable vertical pressure forces at the…  Anders Damsgaard
 (DIR) 2014-11-13 11:44  extend neumann bc condition in pressure…  Anders Damsgaard
 (DIR) 2014-11-13 08:10  use forward differnce for pressure grad…  Anders Damsgaard
 (DIR) 2014-11-13 08:07  update pressure definition to 1st order…  Anders Damsgaard
 (DIR) 2014-11-13 08:06  update call to findDarcyPressureForce     Anders Damsgaard
 (DIR) 2014-11-13 08:05  add Neumann BC at top wall                Anders Damsgaard
 (DIR) 2014-11-13 08:03  add Neumann BC at top wall                Anders Damsgaard
 (DIR) 2014-11-12 19:59  add publication list                      Anders Damsgaard
 (DIR) 2014-11-12 13:21  optimize damping output and K and k info  Anders Damsgaard
 (DIR) 2014-11-12 13:17  fix typo                                  Anders Damsgaard
 (DIR) 2014-11-12 13:16  display values at a porosity of 0.3       Anders Damsgaard
 (DIR) 2014-11-12 13:03  fix IO of dphi values                     Anders Damsgaard
 (DIR) 2014-11-12 12:28  se built-in dtype argument instead of p…  Anders Damsgaard
 (DIR) 2014-11-12 10:48  fix reference to gravity                  Anders Damsgaard
 (DIR) 2014-11-12 10:47  write hydraulic conductivities to VTK f…  Anders Damsgaard
 (DIR) 2014-11-12 10:33  use more convenient type conversion fun…  Anders Damsgaard
 (DIR) 2014-11-12 10:31  convergence data as integers              Anders Damsgaard
 (DIR) 2014-11-12 10:28  add functions to read convergence evolu…  Anders Damsgaard
 (DIR) 2014-11-12 09:52  use crank-nicolson scheme as default      Anders Damsgaard
 (DIR) 2014-11-12 09:09  add dp_expl to debug output               Anders Damsgaard
 (DIR) 2014-11-12 09:04  adjustable integration method, implicit…  Anders Damsgaard
 (DIR) 2014-11-10 15:14  quiet run                                 Anders Damsgaard
 (DIR) 2014-11-10 15:13  improve dirichlet formulation             Anders Damsgaard
 (DIR) 2014-11-10 14:28  debugging darcy tests, improve solution…  Anders Damsgaard
 (DIR) 2014-11-10 12:32  udpate to new default pressure            Anders Damsgaard
 (DIR) 2014-11-10 12:27  update for default values, quiet run      Anders Damsgaard
 (DIR) 2014-11-10 12:25  update to default pressure value          Anders Damsgaard
 (DIR) 2014-11-10 11:56  update pressure conservation test to ne…  Anders Damsgaard
 (DIR) 2014-11-10 11:51  add test title output                     Anders Damsgaard
 (DIR) 2014-11-10 11:49  disable vtk output, avoid divide by zer…  Anders Damsgaard
 (DIR) 2014-11-10 11:47  avoid divide by zero in inviscid fluid    Anders Damsgaard
 (DIR) 2014-11-10 09:40  fluid pressure zero by default            Anders Damsgaard
 (DIR) 2014-11-10 09:38  write vtk files, only show info output …  Anders Damsgaard
 (DIR) 2014-11-10 09:15  add pressure perturbation test, do not …  Anders Damsgaard
 (DIR) 2014-11-10 09:03  few grammar edits                         Anders Damsgaard
 (DIR) 2014-11-09 20:14  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2014-11-09 20:13  disable debug output, add experimental …  Anders Damsgaard
 (DIR) 2014-11-09 09:55  update pressure update debug output       Anders Damsgaard
 (DIR) 2014-11-07 13:00  only set dphi if relevant                 Anders Damsgaard
 (DIR) 2014-11-07 12:54  make sure dphi values are saved in outp…  Anders Damsgaard
 (DIR) 2014-11-07 12:08  decrease porosity control volume radius…  Anders Damsgaard
 (DIR) 2014-11-07 12:02  add missing <                             Anders Damsgaard
 (DIR) 2014-11-07 11:57  fix indentation errors                    Anders Damsgaard
 (DIR) 2014-11-07 11:41  disable fixvel, example not functional    Anders Damsgaard
 (DIR) 2014-11-07 10:38  set ndem to 1 for fluidization tests      Anders Damsgaard
 (DIR) 2014-11-07 10:35  add functions for setting fluid paramet…  Anders Damsgaard
 (DIR) 2014-11-07 08:44  use correct ndem value, add ndem test     Anders Damsgaard
 (DIR) 2014-11-06 14:45  implemented ndem functionality into Dar…  Anders Damsgaard
 (DIR) 2014-11-06 13:43  adjust max. permeability value accordin…  Anders Damsgaard
 (DIR) 2014-11-06 13:43  fix error in max permeability value       Anders Damsgaard
 (DIR) 2014-11-06 12:58  debugging stability issues                Anders Damsgaard
 (DIR) 2014-11-06 12:17  check CFL criteria only                   Anders Damsgaard
 (DIR) 2014-11-06 12:17  use the courant criteria when determini…  Anders Damsgaard
 (DIR) 2014-11-06 11:50  fix fluid time step, add shear            Anders Damsgaard
 (DIR) 2014-11-06 11:47  improve time step selection logic         Anders Damsgaard
 (DIR) 2014-11-06 11:36  add advection stability check             Anders Damsgaard
 (DIR) 2014-11-06 10:15  use hardcoded limits for fluid time step  Anders Damsgaard
 (DIR) 2014-11-06 09:59  adjust porosity range to better estimat…  Anders Damsgaard
 (DIR) 2014-11-06 09:54  start error with newline, debug shear e…  Anders Damsgaard
 (DIR) 2014-11-06 09:49  fix fluid solver value                    Anders Damsgaard
 (DIR) 2014-11-06 09:48  report fluid solver choice                Anders Damsgaard
 (DIR) 2014-11-06 09:15  improve time step computing functionali…  Anders Damsgaard
 (DIR) 2014-11-06 09:02  add functions to set frictional coeffic…  Anders Damsgaard
 (DIR) 2014-11-05 18:39  include dynamic wall test                 Anders Damsgaard
 (DIR) 2014-11-05 14:42  fix porosity calculation issues           Anders Damsgaard
 (DIR) 2014-11-05 14:37  fix calls to generateRadii                Anders Damsgaard
 (DIR) 2014-11-05 14:36  add note on fluid simulation              Anders Damsgaard
 (DIR) 2014-11-05 14:31  fix markdown                              Anders Damsgaard
 (DIR) 2014-11-05 14:29  do not write vtk files and cleanup file…  Anders Damsgaard
 (DIR) 2014-11-05 14:27  add note on Darcy solver initialization   Anders Damsgaard
 (DIR) 2014-11-05 14:25  Merge pull request #8 from anders-dc/da…  Anders Damsgaard
 (DIR) 2014-10-28 08:35  remove `c_a` parameter and reuse the sl…  Anders Damsgaard
 (DIR) 2014-10-27 10:43  fix legend                                Anders Damsgaard
 (DIR) 2014-10-27 10:33  fix grid                                  Anders Damsgaard
 (DIR) 2014-10-27 10:31  do not label irrelevant axis              Anders Damsgaard
 (DIR) 2014-10-27 10:20  improve labels and plotting sequence      Anders Damsgaard
 (DIR) 2014-10-27 10:19  correct output file name                  Anders Damsgaard
 (DIR) 2014-10-27 10:14  only plot zflow if fluid=True             Anders Damsgaard
 (DIR) 2014-10-27 10:13  avoid division by zero                    Anders Damsgaard
 (DIR) 2014-10-27 10:09  added script to investigate rate depend…  Anders Damsgaard
 (DIR) 2014-10-24 13:50  change to set 2                           Anders Damsgaard
 (DIR) 2014-10-24 11:51  add scripts with different velocity sca…  Anders Damsgaard
 (DIR) 2014-10-24 11:44  add starter scripts with new fluid scal…  Anders Damsgaard
 (DIR) 2014-10-24 11:06  update halfshear starter script to new …  Anders Damsgaard
 (DIR) 2014-10-24 09:58  rename test with zero advection and vel…  Anders Damsgaard
 (DIR) 2014-10-24 09:48  update equations for c_v and c_a          Anders Damsgaard
 (DIR) 2014-10-23 09:59  correct run calls                         Anders Damsgaard
 (DIR) 2014-10-23 09:56  use default device                        Anders Damsgaard
 (DIR) 2014-10-23 09:52  c_grad_p replaced by velocity scaling t…  Anders Damsgaard
 (DIR) 2014-10-22 13:36  long neumann test                         Anders Damsgaard
 (DIR) 2014-10-22 13:33  disable epsilon output                    Anders Damsgaard
 (DIR) 2014-10-22 12:20  disable cfd debug output                  Anders Damsgaard
 (DIR) 2014-10-22 12:19  set velocity BCs on predicted values as…  Anders Damsgaard
 (DIR) 2014-10-22 09:47  modify debug output                       Anders Damsgaard
 (DIR) 2014-10-22 09:06  output old velocities                     Anders Damsgaard
 (DIR) 2014-10-22 08:35  correct velocity gradient at bottom neu…  Anders Damsgaard
 (DIR) 2014-10-21 13:46  add units to VTK array names              Anders Damsgaard
 (DIR) 2014-10-21 13:34  set ghost nodes in epsilon no matter if…  Anders Damsgaard
 (DIR) 2014-10-21 12:28  debugging neumann test                    Anders Damsgaard
 (DIR) 2014-10-21 07:26  fix debug output conditional statement    Anders Damsgaard
 (DIR) 2014-10-21 07:25  enabled debug output of corrector term    Anders Damsgaard
 (DIR) 2014-10-20 14:10  decrease v_f_z tolerance, shorten test …  Anders Damsgaard
 (DIR) 2014-10-20 13:24  updated SET_2 equations                   Anders Damsgaard
 (DIR) 2014-10-20 11:29  improve plots, remove stray tabs          Anders Damsgaard
 (DIR) 2014-10-17 08:09  updated plots                             Anders Damsgaard
 (DIR) 2014-10-17 08:09  added scripts to continue velocity fact…  Anders Damsgaard
 (DIR) 2014-10-14 12:28  added wet velocity factor experiments     Anders Damsgaard
 (DIR) 2014-10-14 12:16  fix arguments                             Anders Damsgaard
 (DIR) 2014-10-14 11:55  add torque script for dry velocity fact…  Anders Damsgaard
 (DIR) 2014-10-14 11:50  add script to launch halfshear exp with…  Anders Damsgaard
 (DIR) 2014-10-14 11:50  reselect output                           Anders Damsgaard
 (DIR) 2014-10-14 11:49  fix vtk files                             Anders Damsgaard
 (DIR) 2014-10-14 11:49  do not overwrite 00000 output file if i…  Anders Damsgaard
 (DIR) 2014-10-14 09:23  fix reynolds number calculation, add Re…  Anders Damsgaard
 (DIR) 2014-10-13 09:25  improve pressure time series plots        Anders Damsgaard
 (DIR) 2014-10-13 08:42  add results from c=0.01                   Anders Damsgaard
 (DIR) 2014-10-13 07:31  optimize runtime by disabling of unwant…  Anders Damsgaard
 (DIR) 2014-10-12 17:50  update ns solver equations                Anders Damsgaard
 (DIR) 2014-10-12 14:55  do not run tests with c=0.1               Anders Damsgaard
 (DIR) 2014-10-12 14:35  c_grad_p fixes, do not specify device, …  Anders Damsgaard
 (DIR) 2014-10-12 14:11  revised velocity prediction, velocity c…  Anders Damsgaard
 (DIR) 2014-10-10 08:15  use reformulated forcing function, remo…  Anders Damsgaard
 (DIR) 2014-10-09 13:35  add c_grad_p to forcing function          Anders Damsgaard
 (DIR) 2014-10-08 10:18  add script to analyze peak and ultimate…  Anders Damsgaard
 (DIR) 2014-10-08 09:59  improve plots, relabel from ultimate to…  Anders Damsgaard
 (DIR) 2014-10-07 14:16  add c value to label                      Anders Damsgaard
 (DIR) 2014-10-07 14:14  newline in annotation                     Anders Damsgaard
 (DIR) 2014-10-07 14:12  fix annotation                            Anders Damsgaard
 (DIR) 2014-10-07 14:02  annotate state                            Anders Damsgaard
 (DIR) 2014-10-07 13:53  improve plots                             Anders Damsgaard
 (DIR) 2014-10-07 12:33  improved plots                            Anders Damsgaard
 (DIR) 2014-10-06 12:53  add new plot                              Anders Damsgaard
 (DIR) 2014-10-06 11:22  scale pressure gradient force with c_gr…  Anders Damsgaard
 (DIR) 2014-10-03 13:45  add annotations to pressures, improve p…  Anders Damsgaard
 (DIR) 2014-10-02 19:30  remove redundant newline                  Anders Damsgaard
 (DIR) 2014-10-02 19:27  do not intialize cuda and check values …  Anders Damsgaard
 (DIR) 2014-10-02 18:14  improved plot                             Anders Damsgaard
 (DIR) 2014-10-02 18:05  improve plot appearance                   Anders Damsgaard
 (DIR) 2014-10-02 17:54  improve plots                             Anders Damsgaard
 (DIR) 2014-10-02 11:54  added script to start shear2 simulations  Anders Damsgaard
 (DIR) 2014-10-02 11:52  apply normal stress, do not create visu…  Anders Damsgaard
 (DIR) 2014-10-01 11:13  add dry and wet functions                 Anders Damsgaard
 (DIR) 2014-10-01 10:39  visualize mean pressures as time series…  Anders Damsgaard
 (DIR) 2014-10-01 08:00  improved plots                            Anders Damsgaard
 (DIR) 2014-09-30 13:12  small fixes, findOverlaps works           Anders Damsgaard
 (DIR) 2014-09-30 13:07  added findOverlaps in sphere.py (untest…  Anders Damsgaard
 (DIR) 2014-09-30 12:51  add functionality to list inter-particl…  Anders Damsgaard
 (DIR) 2014-09-30 12:35  use more appropriate truth comparisons    Anders Damsgaard
 (DIR) 2014-09-30 12:32  only remove fluid parameters in wet sim…  Anders Damsgaard
 (DIR) 2014-09-30 08:04  print critical damping value              Anders Damsgaard
 (DIR) 2014-09-30 07:41  add warning system to avoid over-dampen…  Anders Damsgaard
 (DIR) 2014-09-30 07:02  still improving plot, added starter for…  Anders Damsgaard
 (DIR) 2014-09-25 08:52  better approximate the actual steady-st…  Anders Damsgaard
 (DIR) 2014-09-25 07:52  allow selection of several particles in…  Anders Damsgaard
 (DIR) 2014-09-24 11:47  fix range in shear plot, improve fc plo…  Anders Damsgaard
 (DIR) 2014-09-24 08:55  plot force chains in a time series        Anders Damsgaard
 (DIR) 2014-09-24 08:31  use lighter gray                          Anders Damsgaard
 (DIR) 2014-09-24 08:28  add parameter to scale line thicknesses   Anders Damsgaard
 (DIR) 2014-09-24 08:25  correct white color                       Anders Damsgaard
 (DIR) 2014-09-24 08:18  colorscale white to black                 Anders Damsgaard
 (DIR) 2014-09-24 08:15  use BW colorscale for force chain visua…  Anders Damsgaard
 (DIR) 2014-09-24 08:09  read noshear file as input when c_grad_…  Anders Damsgaard
 (DIR) 2014-09-23 14:18  forcechains function in pure python aba…  Anders Damsgaard
 (DIR) 2014-09-23 13:43  implementing forcechains2d plot in sphe…  Anders Damsgaard
 (DIR) 2014-09-22 19:26  fix self reference                        Anders Damsgaard
 (DIR) 2014-09-22 13:10  set velocity to zero above dynamic wall   Anders Damsgaard
 (DIR) 2014-09-19 13:44  old formulation of wall stress            Anders Damsgaard
 (DIR) 2014-09-19 13:32  corrected BCs at top wall                 Anders Damsgaard
 (DIR) 2014-09-19 12:57  remove dp_dz output                       Anders Damsgaard
 (DIR) 2014-09-19 12:56  remove p debug output                     Anders Damsgaard
 (DIR) 2014-09-19 12:55  added Dirichlet and Neumann BC at the d…  Anders Damsgaard
 (DIR) 2014-09-19 09:33  remove comment                            Anders Damsgaard
 (DIR) 2014-09-19 09:19  set wall devs value in consolidate func…  Anders Damsgaard
 (DIR) 2014-09-19 09:19  add pressure set in jacobi loop           Anders Damsgaard
 (DIR) 2014-09-19 09:16  devs should still be set, add function …  Anders Damsgaard
 (DIR) 2014-09-16 07:31  added relatively light-weight shear exp…  Anders Damsgaard
 (DIR) 2014-09-16 07:27  set default value of frictional coeffic…  Anders Damsgaard
 (DIR) 2014-09-16 07:22  add function to set simulation id         Anders Damsgaard
 (DIR) 2014-09-16 07:19  run consolidation with heavy wall inste…  Anders Damsgaard
 (DIR) 2014-09-16 07:16  use output with heavy wall                Anders Damsgaard
 (DIR) 2014-09-15 13:02  increase wall mass instead of applying …  Anders Damsgaard
 (DIR) 2014-09-12 10:38  add reynolds number function              Anders Damsgaard
 (DIR) 2014-09-11 12:24  fancy legends, fix consolidation plot     Anders Damsgaard
 (DIR) 2014-09-11 10:41  improve plot appearance, fix max pressu…  Anders Damsgaard
 (DIR) 2014-09-10 08:18  plotting of several steps works, shear …  Anders Damsgaard
 (DIR) 2014-09-10 07:30  take a single step, define as input arg   Anders Damsgaard
 (DIR) 2014-09-09 13:40  improved plots with means and porosities  Anders Damsgaard
 (DIR) 2014-09-09 13:11  add latex labels                          Anders Damsgaard
 (DIR) 2014-09-09 12:47  improve plot                              Anders Damsgaard
 (DIR) 2014-09-09 12:42  add script to plot shear zone internals   Anders Damsgaard
 (DIR) 2014-09-09 11:31  add min, mean and max pressures to shea…  Anders Damsgaard
 (DIR) 2014-09-09 11:16  increase simulation time to 20 s          Anders Damsgaard
 (DIR) 2014-09-09 08:34  dilation values already normalized in s…  Anders Damsgaard
 (DIR) 2014-09-09 08:31  reenable grid                             Anders Damsgaard
 (DIR) 2014-09-09 08:29  disable grid                              Anders Damsgaard
 (DIR) 2014-09-09 08:27  dimensionless dilation in dry results     Anders Damsgaard
 (DIR) 2014-09-09 08:24  ignore first set of values                Anders Damsgaard
 (DIR) 2014-09-09 08:22  dimensionless dilation                    Anders Damsgaard
 (DIR) 2014-09-09 07:42  adjust grid size before initializing fl…  Anders Damsgaard
 (DIR) 2014-09-09 07:23  remove invalid arg                        Anders Damsgaard
 (DIR) 2014-09-09 07:20  adjust grid height properly               Anders Damsgaard
 (DIR) 2014-09-09 07:09  increase grid height                      Anders Damsgaard
 (DIR) 2014-09-09 07:06  add script showing shear stress and dil…  Anders Damsgaard
 (DIR) 2014-09-09 07:05  set legend font size                      Anders Damsgaard
 (DIR) 2014-09-08 08:27  several bugfixes in shear visualization   Anders Damsgaard
 (DIR) 2014-09-08 07:40  remove compressed file                    Anders Damsgaard
 (DIR) 2014-09-08 07:39  remove old diagnostics file if it exists  Anders Damsgaard
 (DIR) 2014-09-05 09:59  save values from shear visualization in…  Anders Damsgaard
 (DIR) 2014-09-05 09:39  added wet shear scripts                   Anders Damsgaard
 (DIR) 2014-09-05 08:52  added script to continue dry shear expe…  Anders Damsgaard
 (DIR) 2014-09-05 08:16  added script to continue simulation whe…  Anders Damsgaard
 (DIR) 2014-09-04 13:50  copy plots to article folder              Anders Damsgaard
 (DIR) 2014-09-04 11:45  fix axis selection for disabling numeri…  Anders Damsgaard
 (DIR) 2014-09-04 11:42  improve diffusivity plot, time in conti…  Anders Damsgaard
 (DIR) 2014-09-04 10:37  finalize plotting routine                 Anders Damsgaard
 (DIR) 2014-09-04 10:37  save mean porosity value                  Anders Damsgaard
 (DIR) 2014-09-04 10:35  added script to continue simulations wh…  Anders Damsgaard
 (DIR) 2014-09-03 07:56  added job script generating function fo…  Anders Damsgaard
 (DIR) 2014-09-02 12:30  add lo_visc to sid                        Anders Damsgaard
 (DIR) 2014-09-02 12:29  decrease viscosity consistent with scal…  Anders Damsgaard
 (DIR) 2014-09-02 12:28  decrease viscosity                        Anders Damsgaard
 (DIR) 2014-09-02 07:21  do not call plotEvolution                 Anders Damsgaard
 (DIR) 2014-09-02 07:08  increased frictional coefficient          Anders Damsgaard
 (DIR) 2014-09-02 07:07  increased frictional coefficients         Anders Damsgaard
 (DIR) 2014-09-01 14:20  fix function refs                         Anders Damsgaard
 (DIR) 2014-09-01 14:19  fix function references                   Anders Damsgaard
 (DIR) 2014-09-01 14:12  fix peak strength text                    Anders Damsgaard
 (DIR) 2014-09-01 14:07  altered appearance of shear plot          Anders Damsgaard
 (DIR) 2014-09-01 12:56  set sigma0                                Anders Damsgaard
 (DIR) 2014-09-01 12:50  fix typo in function name                 Anders Damsgaard
 (DIR) 2014-09-01 12:45  updated documentation                     Anders Damsgaard
 (DIR) 2014-09-01 12:44  added shearStrainRate and inertiaParame…  Anders Damsgaard
 (DIR) 2014-09-01 12:22  set sid according to fluid presence       Anders Damsgaard
 (DIR) 2014-09-01 11:50  fix typo                                  Anders Damsgaard
 (DIR) 2014-09-01 11:47  use input files with short sid            Anders Damsgaard
 (DIR) 2014-09-01 11:45  added shear tests                         Anders Damsgaard
 (DIR) 2014-09-01 11:40  plot evolution, improve shear starter     Anders Damsgaard
 (DIR) 2014-09-01 11:24  visual formatting                         Anders Damsgaard
 (DIR) 2014-09-01 11:24  ignore results with c=0.01 that are inf…  Anders Damsgaard
 (DIR) 2014-09-01 11:21  added capillary model from Richefeu 200…  Anders Damsgaard
 (DIR) 2014-09-01 11:21  use results from tall experiments         Anders Damsgaard
 (DIR) 2014-09-01 10:45  fix dimensions, add missing initTempora…  Anders Damsgaard
 (DIR) 2014-09-01 09:29  fix object name                           Anders Damsgaard
 (DIR) 2014-09-01 09:27  initialize grid                           Anders Damsgaard
 (DIR) 2014-09-01 09:21  flip grid indexing                        Anders Damsgaard
 (DIR) 2014-09-01 09:03  translate particles                       Anders Damsgaard
 (DIR) 2014-09-01 09:02  fix typo                                  Anders Damsgaard
 (DIR) 2014-09-01 08:57  add scaling                               Anders Damsgaard
 (DIR) 2014-09-01 08:47  only add fluid force vectors if fluid=t…  Anders Damsgaard
 (DIR) 2014-09-01 08:44  added alternative script to test capill…  Anders Damsgaard
 (DIR) 2014-09-01 08:43  fix device                                Anders Damsgaard
 (DIR) 2014-09-01 07:09  run gravity-free simulation on starting…  Anders Damsgaard
 (DIR) 2014-09-01 06:56  uniform psd                               Anders Damsgaard
 (DIR) 2014-08-29 13:24  append nograv if gravity == 0             Anders Damsgaard
 (DIR) 2014-08-29 13:23  add gravity flag                          Anders Damsgaard
 (DIR) 2014-08-29 13:09  rename sid during collapse                Anders Damsgaard
 (DIR) 2014-08-29 13:01  added script for simulating capillary c…  Anders Damsgaard
 (DIR) 2014-08-29 11:52  change c values                           Anders Damsgaard
 (DIR) 2014-08-29 11:51  -tall as job name suffix                  Anders Damsgaard
 (DIR) 2014-08-29 11:50  increase height of fluid grid             Anders Damsgaard
 (DIR) 2014-08-29 11:47  add output when sim isn't found, increa…  Anders Damsgaard
 (DIR) 2014-08-29 08:44  add disclaimer on GPU platform            Anders Damsgaard
 (DIR) 2014-08-29 08:42  move legend, add permeability results w…  Anders Damsgaard
 (DIR) 2014-08-27 10:48  read from 5kPa simulation with identica…  Anders Damsgaard
 (DIR) 2014-08-27 10:42  reset fluid to hydrostatic pressure dis…  Anders Damsgaard
 (DIR) 2014-08-27 09:10  just modify w_devs value and leave rest…  Anders Damsgaard
 (DIR) 2014-08-27 09:09  do not adjust upper wall                  Anders Damsgaard
 (DIR) 2014-08-27 09:08  disable fluid initialization              Anders Damsgaard
 (DIR) 2014-08-27 09:06  improve plot                              Anders Damsgaard
 (DIR) 2014-08-27 08:28  disable normalization while simulations…  Anders Damsgaard
 (DIR) 2014-08-27 08:18  increase total time to 10s                Anders Damsgaard
 (DIR) 2014-08-27 08:16  plot results for all c values             Anders Damsgaard
 (DIR) 2014-08-27 08:12  add scripts for consolidation curve plot  Anders Damsgaard
 (DIR) 2014-08-27 08:04  normalize the thickness change            Anders Damsgaard
 (DIR) 2014-08-27 07:50  scripts to interpret permeability and d…  Anders Damsgaard
 (DIR) 2014-08-26 14:01  add gcc --version                         Anders Damsgaard
 (DIR) 2014-08-26 13:33  disable epsilon output                    Anders Damsgaard
 (DIR) 2014-08-26 13:32  do not calculate all velocity component…  Anders Damsgaard
 (DIR) 2014-08-26 11:42  reorganize synchronization points         Anders Damsgaard
 (DIR) 2014-08-26 11:08  add comment, upgrade constant floating …  Anders Damsgaard
 (DIR) 2014-08-26 08:50  compress output file                      Anders Damsgaard
 (DIR) 2014-08-26 08:45  add attachment info                       Anders Damsgaard
 (DIR) 2014-08-26 08:41  slight change of output                   Anders Damsgaard
 (DIR) 2014-08-26 08:32  modify report string                      Anders Damsgaard
 (DIR) 2014-08-26 08:32  show message to user                      Anders Damsgaard
 (DIR) 2014-08-26 08:30  clear OUTFILE on first output             Anders Damsgaard
 (DIR) 2014-08-26 08:27  do not list contents of output folder     Anders Damsgaard
 (DIR) 2014-08-26 08:25  add nvcc version call                     Anders Damsgaard
 (DIR) 2014-08-26 08:25  added diagnostics script                  Anders Damsgaard
 (DIR) 2014-08-21 11:46  extend time of diffusion experiments      Anders Damsgaard
 (DIR) 2014-08-21 11:44  quiet reads                               Anders Damsgaard
 (DIR) 2014-08-21 11:43  disable debug output                      Anders Damsgaard
 (DIR) 2014-08-21 11:29  do not visualize in starter script        Anders Damsgaard
 (DIR) 2014-08-21 11:09  decrease shear velocity                   Anders Damsgaard
 (DIR) 2014-08-21 11:08  use consolidation experiments with c=1.…  Anders Damsgaard
 (DIR) 2014-08-21 10:47  added shear simulation starter script     Anders Damsgaard
 (DIR) 2014-08-21 10:46  use built-in coloring function            Anders Damsgaard
 (DIR) 2014-08-21 10:44  fix device selection                      Anders Damsgaard
 (DIR) 2014-08-21 10:43  fix device selection                      Anders Damsgaard
 (DIR) 2014-08-21 10:40  add checkerboard color function           Anders Damsgaard
 (DIR) 2014-08-21 10:35  added shear test job scripts              Anders Damsgaard
 (DIR) 2014-08-21 09:32  let matplotlib handle color               Anders Damsgaard
 (DIR) 2014-08-21 09:31  plot results from variable c, dpdz and …  Anders Damsgaard
 (DIR) 2014-08-21 09:04  script to interpret and plot consolidat…  Anders Damsgaard
 (DIR) 2014-08-21 09:03  set coefficients                          Anders Damsgaard
 (DIR) 2014-08-21 07:21  disable text output                       Anders Damsgaard
 (DIR) 2014-08-21 07:20  improved plot quality                     Anders Damsgaard
 (DIR) 2014-08-20 07:30  fix loop behavior                         Anders Damsgaard
 (DIR) 2014-08-18 09:56  Interpret results from permeability{1-3…  Anders Damsgaard
 (DIR) 2014-08-15 17:51  fixed out-of-grid errors in porosity es…  Anders Damsgaard
 (DIR) 2014-08-15 10:01  storing fluid interaction force compone…  Anders Damsgaard
 (DIR) 2014-08-14 13:59  remove linear plot                        Anders Damsgaard
 (DIR) 2014-08-14 13:58  improved porosity estimation. Interpola…  Anders Damsgaard
 (DIR) 2014-08-14 13:44  improved docstring                        Anders Damsgaard
 (DIR) 2014-08-14 12:55  small corrections                         Anders Damsgaard
 (DIR) 2014-08-14 12:53  calculate consolidation coefficient and…  Anders Damsgaard
 (DIR) 2014-08-14 12:05  change data appearance                    Anders Damsgaard
 (DIR) 2014-08-14 11:54  add lines noting D0, D50 and D100         Anders Damsgaard
 (DIR) 2014-08-14 11:50  add function to plot load path            Anders Damsgaard
 (DIR) 2014-08-14 08:59  rename job name                           Anders Damsgaard
 (DIR) 2014-08-14 08:58  new scripts to test diffusivity           Anders Damsgaard
 (DIR) 2014-08-14 08:51  fix setting of loads                      Anders Damsgaard
 (DIR) 2014-08-13 12:52  add cell size calculation                 Anders Damsgaard
 (DIR) 2014-08-13 12:47  correct simulation id                     Anders Damsgaard
 (DIR) 2014-08-13 12:32  correct pbs job name                      Anders Damsgaard
 (DIR) 2014-08-13 12:18  explore relationship between c_grad_p a…  Anders Damsgaard
 (DIR) 2014-08-13 12:08  increase time in permeability experimen…  Anders Damsgaard
 (DIR) 2014-08-13 12:02  fix lowermost particles so everything d…  Anders Damsgaard
 (DIR) 2014-08-13 11:54  fix format type of color                  Anders Damsgaard
 (DIR) 2014-08-13 11:32  create vtk files in separate loop         Anders Damsgaard
 (DIR) 2014-08-13 11:32  fix vtk output for particles              Anders Damsgaard
 (DIR) 2014-08-13 10:48  dont create plots of temporal evolution   Anders Damsgaard
 (DIR) 2014-08-13 10:30  return vertical hydraulic conductivity    Anders Damsgaard
 (DIR) 2014-08-13 09:53  preallocate arrays                        Anders Damsgaard
 (DIR) 2014-08-13 09:46  save figure, do not show                  Anders Damsgaard
 (DIR) 2014-08-13 09:32  improved result analysis script           Anders Damsgaard
 (DIR) 2014-08-13 09:22  rename calculator file                    Anders Damsgaard
 (DIR) 2014-08-13 09:20  separate files for calculator and calcu…  Anders Damsgaard
 (DIR) 2014-08-13 09:09  increase damping                          Anders Damsgaard
 (DIR) 2014-08-13 09:06  improved readability of hydraulic condu…  Anders Damsgaard
 (DIR) 2014-08-13 08:01  improved output plot                      Anders Damsgaard
 (DIR) 2014-08-13 07:30  fix typo                                  Anders Damsgaard
 (DIR) 2014-08-13 07:30  added plot file name output               Anders Damsgaard
 (DIR) 2014-08-13 07:29  added permeability calculator             Anders Damsgaard
 (DIR) 2014-08-11 12:47  initialize constants to double precisio…  Anders Damsgaard
 (DIR) 2014-08-11 12:37  add const and __restrict__ keywords to …  Anders Damsgaard
 (DIR) 2014-08-11 08:16  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2014-08-11 08:10  replaced .format with % expressions to …  Anders Damsgaard
 (DIR) 2014-07-30 11:42  increase width of sid field in list out…  Anders Damsgaard
 (DIR) 2014-07-30 10:37  initialize c_phi and c_grad_phi as arra…  Anders Damsgaard
 (DIR) 2014-07-30 10:33  add another c_grad_p value simulation     Anders Damsgaard
 (DIR) 2014-07-30 10:31  added simulations with different c_grad…  Anders Damsgaard
 (DIR) 2014-07-30 10:28  added another porosity test               Anders Damsgaard
 (DIR) 2014-07-30 10:27  update job name                           Anders Damsgaard
 (DIR) 2014-07-30 10:26  added permeability experiments with 10%…  Anders Damsgaard
 (DIR) 2014-07-30 10:22  reenable run                              Anders Damsgaard
 (DIR) 2014-07-30 10:21  improved argument handling                Anders Damsgaard
 (DIR) 2014-07-30 09:35  universal starter for permeability expe…  Anders Damsgaard
 (DIR) 2014-07-30 08:41  fix less particles on bottom right wall   Anders Damsgaard
 (DIR) 2014-07-29 12:14  fix sign                                  Anders Damsgaard
 (DIR) 2014-07-29 12:10  added set of missing grid corner cell-f…  Anders Damsgaard
 (DIR) 2014-07-28 13:51  set default values for c_phi and c_grad…  Anders Damsgaard
 (DIR) 2014-07-28 13:38  increment version number                  Anders Damsgaard
 (DIR) 2014-07-28 13:36  add scaling coefficients c_phi and c_gr…  Anders Damsgaard
 (DIR) 2014-07-28 12:44  add long cmd line arg                     Anders Damsgaard
 (DIR) 2014-07-28 12:43  updated readme                            Anders Damsgaard
 (DIR) 2014-07-28 09:38  reenable other calls                      Anders Damsgaard
 (DIR) 2014-07-28 09:35  change to cudaSetDevice call              Anders Damsgaard
 (DIR) 2014-07-28 09:28  do not run tests on Grendel               Anders Damsgaard
 (DIR) 2014-07-28 09:25  add information on automatically chosen…  Anders Damsgaard
 (DIR) 2014-07-28 09:00  correct constructor call, add error mes…  Anders Damsgaard
 (DIR) 2014-07-28 08:56  remove exclusive flag, choose device on…  Anders Damsgaard
 (DIR) 2014-07-28 08:25  run in exclusive mode for Grendel         Anders Damsgaard
 (DIR) 2014-07-28 08:23  add exclusive parameter to run function   Anders Damsgaard
 (DIR) 2014-07-28 08:20  only print device info if verbose flag …  Anders Damsgaard
 (DIR) 2014-07-28 08:12  add initial value to fluidarg             Anders Damsgaard
 (DIR) 2014-07-28 08:01  fix typo                                  Anders Damsgaard
 (DIR) 2014-07-28 08:01  fix more typos                            Anders Damsgaard
 (DIR) 2014-07-28 07:59  fix typo                                  Anders Damsgaard
 (DIR) 2014-07-28 07:58  do not generate separate binary for por…  Anders Damsgaard
 (DIR) 2014-07-28 07:30  add exclusive command line argument to …  Anders Damsgaard
 (DIR) 2014-07-12 14:36  reintroduce 10 DEM steps per CFD step     Anders Damsgaard
 (DIR) 2014-07-11 10:37  set ndem=1                                Anders Damsgaard
 (DIR) 2014-07-11 10:36  decreased ndem to standard value (1)      Anders Damsgaard
 (DIR) 2014-07-07 06:28  reversed order of release notes           Anders Damsgaard
 (DIR) 2014-07-07 06:25  added note on fluid discretization        Anders Damsgaard
 (DIR) 2014-07-05 15:21  corrected input file name, increase max…  Anders Damsgaard
 (DIR) 2014-07-04 17:15  added template for shear experiments      Anders Damsgaard
 (DIR) 2014-07-04 15:16  added scripts and Torque script for dif…  Anders Damsgaard
 (DIR) 2014-07-04 13:08  add Torque job scripts for two examples   Anders Damsgaard
 (DIR) 2014-07-04 13:04  do not write vtk files as default         Anders Damsgaard
 (DIR) 2014-07-04 13:04  add input file for diffusivity experime…  Anders Damsgaard
 (DIR) 2014-07-04 13:02  split permeability experiments into two…  Anders Damsgaard
 (DIR) 2014-07-04 13:00  fixed permeability test                   Anders Damsgaard
 (DIR) 2014-07-04 12:44  added tests for hydrological parameters   Anders Damsgaard
 (DIR) 2014-06-30 10:46  removed failing copy of constant memory…  Anders Damsgaard
 (DIR) 2014-06-30 10:43  working on multi-GPU call for interact …  Anders Damsgaard
 (DIR) 2014-06-30 08:53  copy constant memory to all devices       Anders Damsgaard
 (DIR) 2014-06-30 08:20  double precision comparison               Anders Damsgaard
 (DIR) 2014-06-30 08:18  slight rearranging of output              Anders Damsgaard
 (DIR) 2014-06-30 08:13  cleanup contactmodels.cuh, label in/out…  Anders Damsgaard
 (DIR) 2014-06-30 08:04  dynamically select GPU with most cuda c…  Anders Damsgaard
 (DIR) 2014-06-30 07:21  particle vtk files can be written witho…  Anders Damsgaard
 (DIR) 2014-06-28 13:19  run sphere quietly                        Anders Damsgaard
 (DIR) 2014-06-28 13:11  write interpolated velocities             Anders Damsgaard
 (DIR) 2014-06-28 13:06  Neumann tests pass                        Anders Damsgaard
 (DIR) 2014-06-28 12:59  fix host side vidx                        Anders Damsgaard
 (DIR) 2014-06-28 12:56  use correct face index function for wri…  Anders Damsgaard
 (DIR) 2014-06-26 09:17  write cell face velocities to files       Anders Damsgaard
 (DIR) 2014-06-24 20:01  shorten default time step length          Anders Damsgaard
 (DIR) 2014-06-24 15:08  solver does not converge without at lea…  Anders Damsgaard
 (DIR) 2014-06-24 15:08  added fluid-particle interaction test     Anders Damsgaard
 (DIR) 2014-06-24 15:07  fluid-particle interaction verified       Anders Damsgaard
 (DIR) 2014-06-24 14:48  increase standard DEM time step, 100 DE…  Anders Damsgaard
 (DIR) 2014-06-24 14:29  disable time, add fixed particles to en…  Anders Damsgaard
 (DIR) 2014-06-24 12:46  tests designed to check fluid-particle …  Anders Damsgaard
 (DIR) 2014-06-24 12:46  no slip BC on bottom, free slip on top    Anders Damsgaard
 (DIR) 2014-06-24 12:35  implemented Neumann BCs (free slip, no …  Anders Damsgaard
 (DIR) 2014-06-24 10:22  do not fix right and left boundary part…  Anders Damsgaard
 (DIR) 2014-06-23 06:57  time executions by default, normal boun…  Anders Damsgaard
 (DIR) 2014-06-22 20:02  correct wall velocity                     Anders Damsgaard
 (DIR) 2014-06-22 16:20  fix lowermost particles                   Anders Damsgaard
 (DIR) 2014-06-22 09:43  displacements as a vector instead of co…  Anders Damsgaard
 (DIR) 2014-06-22 08:40  vtk module optional                       Anders Damsgaard
 (DIR) 2014-06-22 07:40  keep value as numpy array                 Anders Damsgaard
 (DIR) 2014-06-22 07:39  update self.version after succesful read  Anders Damsgaard
 (DIR) 2014-06-22 07:35  only read Zdisplacement in new version    Anders Damsgaard
 (DIR) 2014-06-22 07:11  write diameter instead of radius to VTK…  Anders Damsgaard
 (DIR) 2014-06-22 07:11  added Zdisplacement component             Anders Damsgaard
 (DIR) 2014-06-22 06:31  compressional strain calculated from wr…  Anders Damsgaard
 (DIR) 2014-06-21 20:07  disable viscosities                       Anders Damsgaard
 (DIR) 2014-06-21 19:27  equal aspec ratio in color cubes          Anders Damsgaard
 (DIR) 2014-06-21 19:13  fix object name                           Anders Damsgaard
 (DIR) 2014-06-21 19:12  don't cleanup before relaxation step      Anders Damsgaard
 (DIR) 2014-06-21 10:55  added checkerboard coloring, disabled r…  Anders Damsgaard
 (DIR) 2014-06-20 20:48  rebuilt documentation                     Anders Damsgaard
 (DIR) 2014-06-20 20:48  small bugfixes in deleteParticle          Anders Damsgaard
 (DIR) 2014-06-20 20:44  add method to delete a single particle    Anders Damsgaard
 (DIR) 2014-06-20 19:40  add explicit call for periodic boundari…  Anders Damsgaard
 (DIR) 2014-06-20 19:34  normal boundaries by default. use perio…  Anders Damsgaard
 (DIR) 2014-06-20 12:02  add more information to dampening funct…  Anders Damsgaard
 (DIR) 2014-06-20 11:53  add methods to set damping and show rat…  Anders Damsgaard
 (DIR) 2014-06-20 11:35  correct simulation lengths, clean up fi…  Anders Damsgaard
 (DIR) 2014-06-20 11:31  reduce simulation time in wall tests      Anders Damsgaard
 (DIR) 2014-06-20 11:28  tangential viscous energy dissipated no…  Anders Damsgaard
 (DIR) 2014-06-20 11:23  correct calls to viscous energy function  Anders Damsgaard
 (DIR) 2014-06-20 11:21  norm of vel_t                             Anders Damsgaard
 (DIR) 2014-06-20 11:21  viscous energy in tangential component …  Anders Damsgaard
 (DIR) 2014-06-20 11:16  frictional model verified                 Anders Damsgaard
 (DIR) 2014-06-20 11:10  added new methods for other energy bala…  Anders Damsgaard
 (DIR) 2014-06-20 10:34  normal-viscous contact model verified     Anders Damsgaard
 (DIR) 2014-06-20 09:46  add separate functions for viscous diss…  Anders Damsgaard
 (DIR) 2014-06-20 09:40  added contact model tests                 Anders Damsgaard
 (DIR) 2014-06-20 09:29  fix function reference                    Anders Damsgaard
 (DIR) 2014-06-20 09:27  new helper functions for energy tracking  Anders Damsgaard
 (DIR) 2014-06-20 08:39  reworked vector norm and momentum funct…  Anders Damsgaard
 (DIR) 2014-06-20 07:49  added test of kinetic energy magnitude,…  Anders Damsgaard
 (DIR) 2014-06-20 07:35  dont use rotational force in normal vel…  Anders Damsgaard
 (DIR) 2014-06-20 07:30  opposite sign on viscous term             Anders Damsgaard
 (DIR) 2014-06-20 07:27  wall normal force changed to avoid attr…  Anders Damsgaard
 (DIR) 2014-06-19 12:58  added dampening                           Anders Damsgaard
 (DIR) 2014-06-19 12:43  typo in timestep formula                  Anders Damsgaard
 (DIR) 2014-06-19 12:42  avoid attraction due to heavy damping     Anders Damsgaard
 (DIR) 2014-06-19 12:41  new time step formula                     Anders Damsgaard
 (DIR) 2014-06-19 09:15  add coloring                              Anders Damsgaard
 (DIR) 2014-06-19 08:43  add color to vtk files                    Anders Damsgaard
 (DIR) 2014-06-19 08:32  perform relaxation without dynamic walls  Anders Damsgaard
 (DIR) 2014-06-19 08:26  added 'color' array for color index       Anders Damsgaard
 (DIR) 2014-06-19 08:22  removed extra paranthesis                 Anders Damsgaard
 (DIR) 2014-06-19 08:20  fixed type                                Anders Damsgaard
 (DIR) 2014-06-19 07:59  normal force >= 0 to avoid attractive f…  Anders Damsgaard
 (DIR) 2014-06-19 07:59  fix dynamic wall position                 Anders Damsgaard
 (DIR) 2014-06-18 14:11  added shortening experiment scripts       Anders Damsgaard
 (DIR) 2014-06-18 10:35  add credits to contributer                Anders Damsgaard
 (DIR) 2014-06-18 10:34  grid index fix                            Anders Damsgaard
 (DIR) 2014-06-18 09:46  enabled 2d behavior if fixvel > 10        Anders Damsgaard
 (DIR) 2014-06-18 09:43  stgarted implementing slab on a slope, …  Anders Damsgaard
 (DIR) 2014-06-18 08:03  don't read div(tau) if inviscid           Anders Damsgaard
 (DIR) 2014-06-18 07:57  merge tests                               Anders Damsgaard
 (DIR) 2014-06-18 07:54  clean up at end                           Anders Damsgaard
 (DIR) 2014-06-18 07:53  added first simple test, removed debug …  Anders Damsgaard
 (DIR) 2014-06-18 07:42  several functions moved outside np>0 co…  Anders Damsgaard
 (DIR) 2014-06-18 07:04  fixed diagnostics                         Anders Damsgaard
 (DIR) 2014-06-18 07:03  more diagnostics upon failure             Anders Damsgaard
 (DIR) 2014-06-18 06:58  corrected grid boundary check, debuggin…  Anders Damsgaard
 (DIR) 2014-06-17 11:46  neumann test passes with set2             Anders Damsgaard
 (DIR) 2014-06-17 11:29  set2, cfd_tests.py passes                 Anders Damsgaard
 (DIR) 2014-06-17 10:58  only read interaction force if np>0. Se…  Anders Damsgaard
 (DIR) 2014-06-17 07:49  ghost node fix underway                   Anders Damsgaard
 (DIR) 2014-06-09 13:23  disable smoothing by default              Anders Damsgaard
 (DIR) 2014-06-09 13:10  cleanup cfd_tests, analysing cfd_tests_…  Anders Damsgaard
 (DIR) 2014-06-09 13:05  cfd_tests results verified                Anders Damsgaard
 (DIR) 2014-06-09 12:59  build type = release                      Anders Damsgaard
 (DIR) 2014-06-09 12:59  no debug output, verifying tests          Anders Damsgaard
 (DIR) 2014-06-09 10:57  set missing ghost nodes for F_pf and di…  Anders Damsgaard
 (DIR) 2014-06-07 09:36  back to cell-center f_pf and F_pf         Anders Damsgaard
 (DIR) 2014-06-06 12:06  renamed interaction force declaration     Anders Damsgaard
 (DIR) 2014-06-06 11:35  rename face array size var                Anders Damsgaard
 (DIR) 2014-06-06 11:31  rename output                             Anders Damsgaard
 (DIR) 2014-06-06 11:30  renamed interaction force on fluid vect…  Anders Damsgaard
 (DIR) 2014-06-06 11:28  debugging, last commit before moving F_…  Anders Damsgaard
 (DIR) 2014-06-05 10:58  report components                         Anders Damsgaard
 (DIR) 2014-06-05 10:51  set ghost nodes for div(tau)              Anders Damsgaard
 (DIR) 2014-06-05 10:15  first corrections for velocity ghost no…  Anders Damsgaard
 (DIR) 2014-06-05 07:47  small fix                                 Anders Damsgaard
 (DIR) 2014-06-05 07:40  non-verbose                               Anders Damsgaard
 (DIR) 2014-06-05 07:39  use amean function instead of manual ca…  Anders Damsgaard
 (DIR) 2014-06-05 07:32  set v_p components to sensible values i…  Anders Damsgaard
 (DIR) 2014-06-05 06:39  fixed segfault tau due to missing alloc…  Anders Damsgaard
 (DIR) 2014-06-05 06:19  verified div(tau) and interaction force…  Anders Damsgaard
 (DIR) 2014-06-05 05:40  set pressure ghost nodes before used to…  Anders Damsgaard
 (DIR) 2014-06-05 05:31  investigating segfaultm small fixes       Anders Damsgaard
 (DIR) 2014-06-03 14:57  removed face node pointers from host      Anders Damsgaard
 (DIR) 2014-06-03 14:56  removed face node allocation and deallo…  Anders Damsgaard
 (DIR) 2014-06-03 14:52  added ghost nodes to vidx                 Anders Damsgaard
 (DIR) 2014-06-03 14:45  increase size of staggered grid array a…  Anders Damsgaard
 (DIR) 2014-06-03 14:27  fix typos, the code compiles without er…  Anders Damsgaard
 (DIR) 2014-06-03 14:25  fix function and variable type            Anders Damsgaard
 (DIR) 2014-06-03 14:24  fix indicies                              Anders Damsgaard
 (DIR) 2014-06-03 14:21  fix arguments                             Anders Damsgaard
 (DIR) 2014-06-03 14:18  possibly final staggered grid correctio…  Anders Damsgaard
 (DIR) 2014-06-03 10:39  corrected face/center indexing            Anders Damsgaard
 (DIR) 2014-06-03 10:35  split corrector step into two             Anders Damsgaard
 (DIR) 2014-06-03 09:05  reformulated divergence() and forcing f…  Anders Damsgaard
 (DIR) 2014-06-03 09:01  reenable div_phi_vi_v                     Anders Damsgaard
 (DIR) 2014-06-03 09:00  wrong gradient                            Anders Damsgaard
 (DIR) 2014-06-03 08:59  last changes to velocity prediction fun…  Anders Damsgaard
 (DIR) 2014-06-03 08:51  implemented staggered grid in several f…  Anders Damsgaard
 (DIR) 2014-05-27 06:38  added cell_centered option to writeVTKa…  Anders Damsgaard
 (DIR) 2014-05-26 07:02  New cfd-dem implementation                Anders Damsgaard
 (DIR) 2014-05-23 12:35  set2 as default                           Anders Damsgaard
 (DIR) 2014-05-23 11:46  decreased convergence log interval, tes…  Anders Damsgaard
 (DIR) 2014-05-23 11:34  remove debug output from interaction fo…  Anders Damsgaard
 (DIR) 2014-05-23 11:31  remove const keyword                      Anders Damsgaard
 (DIR) 2014-05-23 11:30  avoid chi=-nan                            Anders Damsgaard
 (DIR) 2014-05-23 11:15  fixed io test fluid                       Anders Damsgaard
 (DIR) 2014-05-23 10:50  avoid nan/inf values when |v_rel| = 0     Anders Damsgaard
 (DIR) 2014-05-23 10:42  div(tau) will give wrong values on firs…  Anders Damsgaard
 (DIR) 2014-05-23 09:18  added information to maxNormResNS nan t…  Anders Damsgaard
 (DIR) 2014-05-23 09:11  enabled debugging, small error in printf  Anders Damsgaard
 (DIR) 2014-05-23 09:06  changed debug flag type                   Anders Damsgaard
 (DIR) 2014-05-23 09:01  fixed v_p debug output                    Anders Damsgaard
 (DIR) 2014-05-23 08:50  added finite checks to interaction forc…  Anders Damsgaard
 (DIR) 2014-05-23 08:46  wrong unit in pressure prediction         Anders Damsgaard
 (DIR) 2014-05-23 08:42  implementation from zhou et al 2010, un…  Anders Damsgaard
 (DIR) 2014-05-20 08:06  finished model A+B implementation, unte…  Anders Damsgaard
 (DIR) 2014-05-20 07:59  Option to switch between dem-cfd model …  Anders Damsgaard
 (DIR) 2014-05-12 07:56  fix free call placement                   Anders Damsgaard
 (DIR) 2014-05-12 07:49  show status messages in alphabetical or…  Anders Damsgaard
 (DIR) 2014-05-09 09:01  updated documentation                     Anders Damsgaard
 (DIR) 2014-05-09 08:38  cleanup after tests                       Anders Damsgaard
 (DIR) 2014-05-09 08:37  small format change                       Anders Damsgaard
 (DIR) 2014-05-09 08:27  increase space for two digit timer        Anders Damsgaard
 (DIR) 2014-05-09 07:50  increased readability on list output      Anders Damsgaard
 (DIR) 2014-05-08 09:05  enable fluid flow                         Anders Damsgaard
 (DIR) 2014-05-08 08:57  improved help                             Anders Damsgaard
 (DIR) 2014-05-08 08:55  improved help message, added list option  Anders Damsgaard
 (DIR) 2014-05-08 08:41  simulation list shows shorthand status    Anders Damsgaard
 (DIR) 2014-05-08 08:33  added simulation listing if sphere_stat…  Anders Damsgaard
 (DIR) 2014-05-08 08:05  added help message                        Anders Damsgaard
 (DIR) 2014-05-08 07:37  disabled upwind differences, reworked s…  Anders Damsgaard
 (DIR) 2014-05-07 14:23  add comment on "cell data to point data…  Anders Damsgaard
 (DIR) 2014-05-07 14:17  visualize cell values at cell centers b…  Anders Damsgaard
 (DIR) 2014-05-07 08:06  incrementally update current time         Anders Damsgaard
 (DIR) 2014-05-07 08:03  check CFL criteria in every fluid updat…  Anders Damsgaard
 (DIR) 2014-05-06 11:44  fixed minor error in forcing function, …  Anders Damsgaard
 (DIR) 2014-05-02 11:14  testing pressure gradient force           Anders Damsgaard
 (DIR) 2014-05-02 07:55  added fluid BC methods, testing stokes_…  Anders Damsgaard
 (DIR) 2014-05-01 17:11  add subscripts to timer                   Anders Damsgaard
 (DIR) 2014-05-01 10:44  Added simple particle-fluid test          Anders Damsgaard
 (DIR) 2014-05-01 10:21  minor column width fix                    Anders Damsgaard
 (DIR) 2014-05-01 09:06  build type = release                      Anders Damsgaard
 (DIR) 2014-05-01 08:51  implemented ndem parameter for DEM/CFD …  Anders Damsgaard
 (DIR) 2014-04-30 10:01  verified findDistMod changes              Anders Damsgaard
 (DIR) 2014-04-30 09:47  fixed findDistMod function to allow sea…  Anders Damsgaard
 (DIR) 2014-04-30 06:47  added ndem parameter, debugging fluid t…  Anders Damsgaard
 (DIR) 2014-04-28 12:03  back to using findPorositiesVelocitiesD…  Anders Damsgaard
 (DIR) 2014-04-25 07:07  testing new porosity method, set fluid=…  Anders Damsgaard
 (DIR) 2014-04-24 11:40  added function for porosity gradient es…  Anders Damsgaard
 (DIR) 2014-04-24 08:14  begun implementation of porosity gradie…  Anders Damsgaard
 (DIR) 2014-04-23 13:41  uncommented upward differences            Anders Damsgaard
 (DIR) 2014-04-23 08:14  fluid cell sphere diameter = cell width   Anders Damsgaard
 (DIR) 2014-04-23 07:55  Removed gradient overloading as nvcc do…  Anders Damsgaard
 (DIR) 2014-04-22 13:33  corrected error in forcing function and…  Anders Damsgaard
 (DIR) 2014-04-22 10:53  reenabled term with dphi                  Anders Damsgaard
 (DIR) 2014-04-22 09:09  renamed flag                              Anders Damsgaard
 (DIR) 2014-04-22 09:08  add CFDDEMCOUPLING flag                   Anders Damsgaard
 (DIR) 2014-04-22 08:58  removed phi test                          Anders Damsgaard
 (DIR) 2014-04-22 07:36  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2014-04-22 07:35  removed extra components from checkFini…  Anders Damsgaard
 (DIR) 2014-04-04 11:43  Small correction to fluid-particle coup…  Anders Damsgaard
 (DIR) 2014-04-03 12:26  Added dx exception                        Anders Damsgaard
 (DIR) 2014-04-03 11:05  function overloading doesnt seem to wor…  Anders Damsgaard
 (DIR) 2014-04-03 10:30  Disable other plots                       Anders Damsgaard
 (DIR) 2014-04-03 10:29  Do not generate diffusion/advection plo…  Anders Damsgaard
 (DIR) 2014-04-03 08:58  updated documentation to correct intera…  Anders Damsgaard
 (DIR) 2014-04-03 08:47  Corrected interaction force in velocity…  Anders Damsgaard
 (DIR) 2014-04-03 07:40  Gravitational drag on fluid corrected     Anders Damsgaard
 (DIR) 2014-04-02 13:58  sign error in fixvel evaluation, still …  Anders Damsgaard
 (DIR) 2014-04-02 13:29  added deleteAllParticles method, debugg…  Anders Damsgaard
 (DIR) 2014-04-02 07:41  redundant line break                      Anders Damsgaard
 (DIR) 2014-04-02 07:18  updated documentation                     Anders Damsgaard
 (DIR) 2014-04-02 07:17  Added option to fix particle horizontal…  Anders Damsgaard
 (DIR) 2014-04-01 11:39  Removed porosity forcing at iteration=20  Anders Damsgaard
 (DIR) 2014-04-01 10:57  added more checkFinite tests              Anders Damsgaard
 (DIR) 2014-04-01 10:49  Added tests to check if values in kerne…  Anders Damsgaard
 (DIR) 2014-04-01 07:21  Added fluid shear test                    Anders Damsgaard
 (DIR) 2014-03-31 11:39  Added error handling if visualization m…  Anders Damsgaard
 (DIR) 2014-03-31 11:30  fix typo                                  Anders Damsgaard
 (DIR) 2014-03-31 11:29  dilation in mean grain diameters as def…  Anders Damsgaard
 (DIR) 2014-03-31 11:27  dilation in percent as default            Anders Damsgaard
 (DIR) 2014-03-31 11:23  disable adjustUpperWall call in shear s…  Anders Damsgaard
 (DIR) 2014-03-31 10:37  added syncthreads                         Anders Damsgaard
 (DIR) 2014-03-31 10:36  Add stress BC to top wall in shear func…  Anders Damsgaard
 (DIR) 2014-03-31 09:10  Change shear plot subplot layout          Anders Damsgaard
 (DIR) 2014-03-31 09:05  call adjustUpperWall in shear function    Anders Damsgaard
 (DIR) 2014-03-31 09:00  wall thickness should depend on particl…  Anders Damsgaard
 (DIR) 2014-03-31 08:45  new wall mass function                    Anders Damsgaard
 (DIR) 2014-03-31 07:13  Make sure nw=1 when doing a shear test    Anders Damsgaard
 (DIR) 2014-03-27 12:27  revised hydrostatic pressure distributi…  Anders Damsgaard
 (DIR) 2014-03-27 12:12  Added functionality to initialize fluid…  Anders Damsgaard
 (DIR) 2014-03-27 08:07  visualize function moved to sim class     Anders Damsgaard
 (DIR) 2014-03-26 15:06  Set all fluid parameters in initFluid     Anders Damsgaard
 (DIR) 2014-03-26 15:01  fix typo                                  Anders Damsgaard
 (DIR) 2014-03-26 11:53  allow initFluid on object that initiall…  Anders Damsgaard
 (DIR) 2014-03-26 10:28  Added cross references to solver parame…  Anders Damsgaard
 (DIR) 2014-03-26 09:30  Periodic XY boundaries default in both …  Anders Damsgaard
 (DIR) 2014-03-26 09:30  Periodic lateral boundaries as default    Anders Damsgaard
 (DIR) 2014-03-26 08:47  Second test shows strange behavior star…  Anders Damsgaard
 (DIR) 2014-03-25 14:34  Longer test, changed parameter setting    Anders Damsgaard
 (DIR) 2014-03-25 13:55  Deleted old header file with solver par…  Anders Damsgaard
 (DIR) 2014-03-25 13:35  Merge pull request #6 from anders-dc/ns…  Anders Damsgaard
 (DIR) 2014-03-25 13:22  readme update for merge                   Anders Damsgaard
 (DIR) 2014-03-25 13:17  Merge pull request #5 from anders-dc/ns…  Anders Damsgaard
 (DIR) 2013-10-30 08:13  added document explaining Darcy impleme…  Anders Damsgaard
 (DIR) 2013-10-30 08:12  small changes in scripts                  Anders Damsgaard
 (DIR) 2013-10-29 13:18  darcy flow working                        Anders Damsgaard
 (DIR) 2013-10-29 13:18  hydraulic conductivity added to IO        Anders Damsgaard
 (DIR) 2013-10-28 08:39  removed irrelevant failing bond test      Anders Damsgaard
 (DIR) 2013-10-22 13:20  Added paraview req., fixed collision.py   Anders Damsgaard
 (DIR) 2013-10-22 13:14  added python-vtk requirement              Anders Damsgaard
 (DIR) 2013-10-22 13:11  fixed fluid node offset                   Anders Damsgaard
 (DIR) 2013-10-22 13:06  python-vtk module required, can write f…  Anders Damsgaard
 (DIR) 2013-10-22 11:38  moved darcy arrays into Darcy structure   Anders Damsgaard
 (DIR) 2013-10-22 08:10  the idx function should be inline         Anders Damsgaard
 (DIR) 2013-10-22 07:54  different comment style                   Anders Damsgaard
 (DIR) 2013-10-22 07:18  fatal error in cudaFree calls             Anders Damsgaard
 (DIR) 2013-10-21 12:38  added forgotten cudaFree calls to darcy…  Anders Damsgaard
 (DIR) 2013-10-21 10:54  added line counting script                Anders Damsgaard
 (DIR) 2013-10-21 10:54  darcy values should only be written if …  Anders Damsgaard
 (DIR) 2013-10-21 09:23  added writeVTKall function                Anders Damsgaard
 (DIR) 2013-10-18 12:46  writeVTK implemented and verified         Anders Damsgaard
 (DIR) 2013-10-16 08:50  numerous changes, added sphere based po…  Anders Damsgaard
 (DIR) 2013-10-11 09:20  tight_layout call fixes energy plot lab…  Anders Damsgaard
 (DIR) 2013-10-11 09:00  added example of granular collapse        Anders Damsgaard
 (DIR) 2013-10-09 12:38  first tests with Darcy kernels OK, inpu…  Anders Damsgaard
 (DIR) 2013-10-09 11:47  removed status message from transferDar…  Anders Damsgaard
 (DIR) 2013-10-09 11:43  Darcy kernels disabled, IO verified       Anders Damsgaard
 (DIR) 2013-10-09 11:43  changed title                             Anders Damsgaard
 (DIR) 2013-10-09 11:16  added return statement to test outcome    Anders Damsgaard
 (DIR) 2013-10-09 11:13  Added fluid IO test                       Anders Damsgaard
 (DIR) 2013-10-09 10:16  fixed profiler output                     Anders Damsgaard
 (DIR) 2013-10-09 09:22  forgot to set ghost nodes on device       Anders Damsgaard
 (DIR) 2013-10-09 09:11  ported Darcy routines to CUDA, compiles…  Anders Damsgaard
 (DIR) 2013-10-09 09:10  fixed fatal bug in how threads return i…  Anders Damsgaard
 (DIR) 2013-10-04 12:40  changed order of NVCC flags               Anders Damsgaard
 (DIR) 2013-10-03 12:02  Code is now compiled for either FERMI o…  Anders Damsgaard
 (DIR) 2013-10-02 09:59  fixed error in addParticle                Anders Damsgaard
 (DIR) 2013-10-01 17:33  added readstep and addParticle            Anders Damsgaard
 (DIR) 2013-09-28 08:17  updated examples                          Anders Damsgaard
 (DIR) 2013-09-28 08:16  updated examples                          Anders Damsgaard
 (DIR) 2013-09-28 07:25  fixed particle zone thickness now deter…  Anders Damsgaard
 (DIR) 2013-09-12 09:32  Added some comments, nice indentation     Anders Damsgaard
 (DIR) 2013-09-12 09:10  d_K wasnt set, now working, periodic bo…  Anders Damsgaard
 (DIR) 2013-09-10 13:59  Fixed error in CUDA version               Anders Damsgaard
 (DIR) 2013-08-27 11:59  fixed bug in adjustUpperWall              Anders Damsgaard
 (DIR) 2013-08-27 08:21  added initialization to uniaxial.py       Anders Damsgaard
 (DIR) 2013-08-27 08:18  added initialization to uniaxial.py       Anders Damsgaard
 (DIR) 2013-08-26 10:48  small fixes in triaxial visualization     Anders Damsgaard
 (DIR) 2013-08-22 13:16  updated time view to include total time   Anders Damsgaard
 (DIR) 2013-08-22 12:41  added triaxial visualization method       Anders Damsgaard
 (DIR) 2013-08-22 11:04  updated triaxial script                   Anders Damsgaard
 (DIR) 2013-08-22 11:02  updated triaxial script                   Anders Damsgaard
 (DIR) 2013-08-22 07:45  fixed output display                      Anders Damsgaard
 (DIR) 2013-08-22 07:37  Increased stdout status period            Anders Damsgaard
 (DIR) 2013-08-22 07:37  Some triaxial bugfixes                    Anders Damsgaard
 (DIR) 2013-08-22 07:34  Some triaxial bugfixes                    Anders Damsgaard
 (DIR) 2013-08-21 13:37  sphere now only reports to stdout at a …  Anders Damsgaard
 (DIR) 2013-08-21 12:47  added triaxial and uniaxial example scr…  Anders Damsgaard
 (DIR) 2013-08-21 12:46  added triaxial simulation possibilities   Anders Damsgaard
 (DIR) 2013-08-16 09:22  general updates                           Anders Damsgaard
 (DIR) 2013-08-16 09:21  added a couple of permeability refs;      Anders Damsgaard
 (DIR) 2013-07-04 19:40  Added sphere python module to tests dir   Anders Damsgaard
 (DIR) 2013-06-29 10:11  Darcy porous flow (CPU) implemented, aw…  Anders Damsgaard
 (DIR) 2013-06-24 13:51  Renamed cell storativity to cell specif…  Anders Damsgaard
 (DIR) 2013-06-13 10:45  file write criteria changed               Anders Damsgaard
 (DIR) 2013-06-12 10:37  utility functions split into header and…  Anders Damsgaard
 (DIR) 2013-06-12 10:29  Moved CPU utility functions to separate…  Anders Damsgaard
 (DIR) 2013-06-06 11:24  more work on FD Darcy                     Anders Damsgaard
 (DIR) 2013-06-05 10:02  Darcy flow seems correct, needs test ag…  Anders Damsgaard
 (DIR) 2013-06-03 13:32  Better integration of darcy flow into s…  Anders Damsgaard
 (DIR) 2013-06-03 13:07  Added darcyflow parameter to init         Anders Damsgaard
 (DIR) 2013-06-03 08:57  Working on implementing darcy flow        Anders Damsgaard
 (DIR) 2013-05-28 11:11  Fluid grid values are only read/written…  Anders Damsgaard
 (DIR) 2013-05-28 08:22  Renamed darcy flow main file to porousf…  Anders Damsgaard
 (DIR) 2013-05-28 08:07  Started darcy flow implementation         Anders Damsgaard
 (DIR) 2013-05-24 08:34  fixed error in shear visualization figu…  Anders Damsgaard
 (DIR) 2013-05-24 08:32  fixed indentation error                   Anders Damsgaard
 (DIR) 2013-05-22 11:16  Added video function to sphere class      Anders Damsgaard
 (DIR) 2013-05-21 11:47  Added darcy main file                     Anders Damsgaard C…
 (DIR) 2013-05-02 08:36  Fluid simulation only happens if period…  Anders Damsgaard
 (DIR) 2013-05-02 07:58  Fixed threadsPerBlock value               Anders Damsgaard
 (DIR) 2013-05-01 15:07  Added LBM fluid simulation, values off    Anders Damsgaard
 (DIR) 2013-05-01 14:06  changed to 3d thread layout               Anders Damsgaard
 (DIR) 2013-04-29 12:13  First LB implementation                   Anders Damsgaard
 (DIR) 2013-04-11 08:29  Sphere unsuccessfull return status chan…  Anders Damsgaard
 (DIR) 2013-04-08 08:44  Added porosity plot function              Anders Damsgaard
 (DIR) 2013-04-07 03:16  sheardisp working                         Anders Damsgaard C…
 (DIR) 2013-04-07 02:38  added labels                              Anders Damsgaard C…
 (DIR) 2013-04-07 02:27  added sheardisp visualization             Anders Damsgaard C…
 (DIR) 2013-04-07 01:38  merge                                     Anders Damsgaard C…
 (DIR) 2013-04-06 19:32  tabs-spaces                               Anders Damsgaard C…
 (DIR) 2013-04-03 10:04  cleaned up sphere.py                      Anders Damsgaard C…
 (DIR) 2013-03-17 20:43  Changed return value under dry run        Anders Damsgaard
 (DIR) 2013-03-17 20:40  Removed bond no. reporting                Anders Damsgaard
 (DIR) 2013-03-17 20:25  Merge branch 'varN' Sinusoidal modulati…  Anders Damsgaard
 (DIR) 2013-03-17 20:22  small fixes                               Anders Damsgaard
 (DIR) 2013-03-14 21:48  Added details concerning helper_math.h …  Anders Damsgaard
 (DIR) 2013-03-14 18:25  Added more torque-script generating fun…  Anders Damsgaard
 (DIR) 2013-03-14 05:03  Removed ref. by string from cameraInit    Anders Damsgaard
 (DIR) 2013-03-14 04:39  Added torqueScript3 for running three c…  Anders Damsgaard
 (DIR) 2013-03-14 04:25  Added torqueScript generating function    Anders Damsgaard
 (DIR) 2013-03-13 23:00  Default build type: Release               Anders Damsgaard
 (DIR) 2013-03-13 22:58  Threads per block limited to 256          Anders Damsgaard
 (DIR) 2013-03-13 22:42  Constant memory vars referenced directl…  Anders Damsgaard
 (DIR) 2013-03-13 21:56  added bold typeface to update             Anders Damsgaard
 (DIR) 2013-03-13 21:53  Updated to CUDA 5.0                       Anders Damsgaard
 (DIR) 2013-03-13 04:45  added circle marks for particles in ts …  Anders Damsgaard
 (DIR) 2013-03-12 21:10  Added legacy read mode for old data fil…  Anders Damsgaard
 (DIR) 2013-03-12 21:09  Added legacy read mode for old data fil…  Anders Damsgaard
 (DIR) 2013-03-12 21:07  Particles spinning in pos. y direction …  Anders Damsgaard
 (DIR) 2013-03-12 20:12  Added bond breaking                       Anders Damsgaard
 (DIR) 2013-03-12 20:12  Corrected range error in random number …  Anders Damsgaard
 (DIR) 2013-03-12 18:43  changed to numpy.minimum in E_bond_pot …  Anders Damsgaard
 (DIR) 2013-03-12 05:09  Added bondsRose, visualizing strike and…  Anders Damsgaard
 (DIR) 2013-03-12 04:53  added forcechainsRose visualization met…  Anders Damsgaard
 (DIR) 2013-03-12 04:30  added forcechain vis. method (untested)…  Anders Damsgaard
 (DIR) 2013-03-11 22:34  fixed nb0 value error                     Anders Damsgaard
 (DIR) 2013-03-11 22:17  created cond2linear, a function that bo…  Anders Damsgaard
 (DIR) 2013-03-11 21:01  modified createBondPair description       Anders Damsgaard C…
 (DIR) 2013-03-11 20:54  bonds working, tests passed               Anders Damsgaard
 (DIR) 2013-03-07 17:36  added potential energy stored in bonds    Anders Damsgaard
 (DIR) 2013-03-07 17:36  Bond model passes stability, normal, sh…  Anders Damsgaard
 (DIR) 2013-02-23 20:09  Added parallel bonds, still untested      Anders Damsgaard
 (DIR) 2013-02-22 20:46  Added valgrind and cuda-memcheck tests …  Anders Damsgaard
 (DIR) 2013-02-22 20:45  Removed x flag                            Anders Damsgaard
 (DIR) 2013-02-01 16:18  Merge branch 'master' of https://github…  Anders Damsgaard
 (DIR) 2013-02-01 16:16  removed value check when calculating po…  Anders Damsgaard
 (DIR) 2013-01-26 11:17  tried to fix doc hyperlinks               Anders Damsgaard
 (DIR) 2013-01-26 11:16  removed tmp pdflatex files                Anders Damsgaard
 (DIR) 2013-01-26 11:13  Added links to doc builds                 Anders Damsgaard
 (DIR) 2013-01-26 11:11  Merge branch 'master' of https://github…  Anders Damsgaard
 (DIR) 2013-01-26 11:10  Documentation now available in pdf form…  Anders Damsgaard
 (DIR) 2013-01-26 11:02  changed build path for latexpdf, change…  Anders Damsgaard
 (DIR) 2013-01-25 14:32  bonds implemented                         Anders Damsgaard
 (DIR) 2013-01-25 14:23  added sphere.py symlink                   Anders Damsgaard
 (DIR) 2013-01-25 14:21  Tests incorporated with CMake             Anders Damsgaard
 (DIR) 2013-01-24 14:55  Only a single spherebin is passed to th…  Anders Damsgaard
 (DIR) 2013-01-24 13:07  Const. mem should not be transfered aft…  Anders Damsgaard
 (DIR) 2013-01-24 10:16  fixed bug in class render function        Anders Damsgaard
 (DIR) 2013-01-15 10:48  Force chain visualization implemented     Anders Damsgaard
 (DIR) 2013-01-14 15:09  force chain output working                Anders Damsgaard
 (DIR) 2013-01-14 12:09  fixed alloc error                         Anders Damsgaard
 (DIR) 2013-01-14 12:01  corrected error in forcechains()          Anders Damsgaard
 (DIR) 2013-01-14 11:49  Method flag chooses rendering implicitly  Anders Damsgaard
 (DIR) 2013-01-14 11:47  Implemented simple force chain visualiz…  Anders Damsgaard
 (DIR) 2013-01-14 09:40  Changed dilation unit in shear visualiz…  Anders Damsgaard
 (DIR) 2013-01-11 08:24  Thin section video function added         Anders Damsgaard
 (DIR) 2013-01-10 12:01  Added thin-section visualization method   Anders Damsgaard
 (DIR) 2013-01-09 15:05  Changed dilation output format            Anders Damsgaard
 (DIR) 2013-01-04 12:14  added optional lower cutoff for particl…  Anders Damsgaard
 (DIR) 2013-01-02 11:57  changed fig text precision                Anders Damsgaard
 (DIR) 2013-01-02 11:51  changed fig text precision                Anders Damsgaard
 (DIR) 2013-01-02 11:43  moved tau_u text                          Anders Damsgaard
 (DIR) 2013-01-02 11:42  moved tau_u text                          Anders Damsgaard
 (DIR) 2013-01-02 11:33  bugfix in fig title                       Anders Damsgaard
 (DIR) 2013-01-02 11:23  Added tau_u annotation to shear visuali…  Anders Damsgaard
 (DIR) 2013-01-02 08:57  Fixed porosity calculator and added por…  Anders Damsgaard
 (DIR) 2012-12-27 10:57  Changed format of txt output values in …  Anders Damsgaard
 (DIR) 2012-12-26 12:49  Fixed txt shear output                    Anders Damsgaard
 (DIR) 2012-12-19 12:45  CUDA set as required in cmake             Anders Damsgaard
 (DIR) 2012-12-19 12:32  Build type now set in root CMakeLists.t…  Anders Damsgaard
 (DIR) 2012-12-19 10:53  Shear-test also initializes and consoli…  Anders Damsgaard
 (DIR) 2012-12-19 10:52  Added shear-test                          Anders Damsgaard
 (DIR) 2012-12-19 10:46  x-axis in shear visualization now shear…  Anders Damsgaard
 (DIR) 2012-12-19 10:17  notes on behaviour if SDK is not found …  Anders Damsgaard
 (DIR) 2012-12-19 10:14  Renamed commands calling sphere to shor…  Anders Damsgaard
 (DIR) 2012-12-19 10:10  Minor markup changes                      Anders Damsgaard
 (DIR) 2012-12-19 10:10  Changed eye pos                           Anders Damsgaard
 (DIR) 2012-12-19 10:10  Removed manual Makefile                   Anders Damsgaard
 (DIR) 2012-12-19 10:02  Added INSTALL.sh for linux                Anders Damsgaard
 (DIR) 2012-12-19 10:01  CMake now used as the build system        Anders Damsgaard
 (DIR) 2012-12-18 12:58  Removed legacy raytracer folder, moved …  Anders Damsgaard
 (DIR) 2012-12-18 12:15  Removed header from porosity output       Anders Damsgaard
 (DIR) 2012-12-18 12:15  Fixed linarr memtransfer error            Anders Damsgaard
 (DIR) 2012-12-18 09:39  Porosities are now written to stdout, n…  Anders Damsgaard
 (DIR) 2012-12-17 19:17  Added empty boost unit test               Anders Damsgaard C…
 (DIR) 2012-12-17 14:47  porosity function seems to work           Anders Damsgaard
 (DIR) 2012-12-17 14:17  porosity function seems to work           Anders Damsgaard
 (DIR) 2012-12-17 12:52  Renamed torqueScript email parameters     Anders Damsgaard
 (DIR) 2012-12-17 12:51  Renamed torqueScript email parameters     Anders Damsgaard
 (DIR) 2012-12-13 21:41  Unfinished torqueScript function added    Anders Damsgaard C…
 (DIR) 2012-12-13 09:51  Removed exceptions as dinosaur python d…  Anders Damsgaard
 (DIR) 2012-12-11 08:38  Removed bug that caused unspec. launch …  Anders Damsgaard
 (DIR) 2012-12-06 21:08  documentation build folder now build, s…  Anders Damsgaard C…
 (DIR) 2012-12-06 20:41  porosity main added                       Anders Damsgaard
 (DIR) 2012-12-06 20:39  doc contains sphere output, porosity im…  Anders Damsgaard
 (DIR) 2012-12-06 07:09  Introduction finished                     Anders Damsgaard C…
 (DIR) 2012-12-05 21:42  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-05 21:41  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-05 14:05  Legend in shear visualization stress pl…  Anders Damsgaard
 (DIR) 2012-12-05 13:52  Dilation in shear vis. now in percent     Anders Damsgaard
 (DIR) 2012-12-05 12:20  C++ reference moved into sphere interna…  Anders Damsgaard
 (DIR) 2012-12-05 12:13  Further subdivided docs into separate f…  Anders Damsgaard
 (DIR) 2012-12-05 08:03  Introduction partially reformatted        Anders Damsgaard C…
 (DIR) 2012-12-04 21:12  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:11  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:10  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:09  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:06  Added input folder auto generation        Anders Damsgaard C…
 (DIR) 2012-12-04 21:05  Removed elastic-debug folder and conten…  Anders Damsgaard C…
 (DIR) 2012-12-04 20:59  Further work on converting latex doc to…  Anders Damsgaard C…
 (DIR) 2012-12-04 19:48  Added separate rst files for python api…  Anders Damsgaard C…
 (DIR) 2012-12-04 19:38  Removed doxygen HTML output               Anders Damsgaard C…
 (DIR) 2012-12-04 19:11  Fixed relative path, added Makefile       Anders Damsgaard C…
 (DIR) 2012-12-04 19:09  Doxygen conf file added                   Anders Damsgaard
 (DIR) 2012-12-04 18:44  Fixed stray tab chars and python3 print…  Anders Damsgaard C…
 (DIR) 2012-12-04 13:28  Added cudaCHooseDevice                    Anders Damsgaard
 (DIR) 2012-12-04 12:33  added error message if undefined visual…  Anders Damsgaard
 (DIR) 2012-12-04 12:17  added shebang                             Anders Damsgaard
 (DIR) 2012-12-04 10:32  Removed path to 32 bit libs               Anders Damsgaard
 (DIR) 2012-12-04 08:49  Removed newline                           Anders Damsgaard
 (DIR) 2012-12-03 15:12  Removed bug - dev_wforce_pp should alwa…  Anders Damsgaard
 (DIR) 2012-12-03 08:46  Header file dependencies split into C a…  Anders Damsgaard
 (DIR) 2012-11-30 20:59  Added sphinx documentation, still to be…  Anders Damsgaard
 (DIR) 2012-11-29 21:12  Added missing math mode end symbol        Anders Damsgaard
 (DIR) 2012-11-29 21:11  Added legend to shear stress in visuali…  Anders Damsgaard
 (DIR) 2012-11-29 21:10  Added legend to shear stress in visuali…  Anders Damsgaard
 (DIR) 2012-11-29 20:17  reconfigured shear() to not touch upper…  Anders Damsgaard
 (DIR) 2012-11-29 17:33  video() adapted to new file name format   Anders Damsgaard
 (DIR) 2012-11-29 10:35  Changed multiline comment symbol          Anders Damsgaard
 (DIR) 2012-11-29 10:16  Added grid lines to all visualization p…  Anders Damsgaard
 (DIR) 2012-11-29 10:13  log dev stress vs void ratio plot added…  Anders Damsgaard
 (DIR) 2012-11-29 09:43  Added missing +                           Anders Damsgaard
 (DIR) 2012-11-29 09:42  non-menber render function now includes…  Anders Damsgaard
 (DIR) 2012-11-29 09:31  Added effective and prescribed stress v…  Anders Damsgaard
 (DIR) 2012-11-29 09:29  Fixed wall velocity error                 Anders Damsgaard
 (DIR) 2012-11-29 09:00  Added half-step leapfrog Verlet integra…  Anders Damsgaard
 (DIR) 2012-11-28 14:12  when rendering, dont check values         Anders Damsgaard
 (DIR) 2012-11-28 13:57  Added plot of effective and defined str…  Anders Damsgaard
 (DIR) 2012-11-28 13:37  Fixed indentation                         Anders Damsgaard
 (DIR) 2012-11-28 13:28  Cleaned up, and reformatted comments      Anders Damsgaard
 (DIR) 2012-11-28 13:05  Auto-indented all source files, added m…  Anders Damsgaard
 (DIR) 2012-11-28 12:41  Various wforce changes                    Anders Damsgaard
 (DIR) 2012-11-28 12:36  Fixed typo                                Anders Damsgaard
 (DIR) 2012-11-28 12:34  Added self to member function calls       Anders Damsgaard
 (DIR) 2012-11-28 09:07  Moved general upper wall routines into …  Anders Damsgaard
 (DIR) 2012-11-27 13:46  Fixed indentation error in visualize      Anders Damsgaard
 (DIR) 2012-11-27 13:46  Fixed indentation error in visualize      Anders Damsgaard
 (DIR) 2012-11-27 13:27  tests updated                             Anders Damsgaard
 (DIR) 2012-11-27 13:23  Removed cuPrintf.cuh                      Anders Damsgaard
 (DIR) 2012-11-27 12:46  Removed report of wall values             Anders Damsgaard
 (DIR) 2012-11-27 12:46  Changed write format of wmode             Anders Damsgaard
 (DIR) 2012-11-27 12:45  Bugfix-related changes                    Anders Damsgaard
 (DIR) 2012-11-27 12:44  Corrected critical read bug               Anders Damsgaard
 (DIR) 2012-11-27 11:50  Changed input arguments                   Anders Damsgaard
 (DIR) 2012-11-27 11:49  Added mu_ws and mu_wd zeroing in shear()  Anders Damsgaard
 (DIR) 2012-11-27 07:50  Updated wall integration scheme           Anders Damsgaard
 (DIR) 2012-11-22 13:25  contactLinear improved. Not enough ener…  Anders Damsgaard
 (DIR) 2012-11-22 11:26  fixed indentation error for visualize()   Anders Damsgaard
 (DIR) 2012-11-22 09:46  changed display environment               Anders Damsgaard
 (DIR) 2012-11-22 09:43  Removed cuPrintf.cu                       Anders Damsgaard
 (DIR) 2012-11-22 09:39  further benchmarking of contact model 1   Anders Damsgaard
 (DIR) 2012-11-19 15:20  Fixed critical bug in integration schem…  Anders Damsgaard
 (DIR) 2012-11-19 08:16  defaultParams now uses mu values instea…  Anders Damsgaard
 (DIR) 2012-11-19 08:09  defaultParams now uses mu values instea…  Anders Damsgaard
 (DIR) 2012-11-14 13:15  Raytracer only calls cudaFree(linarr) w…  Anders Damsgaard
 (DIR) 2012-11-14 11:49  Changed tests to new digit format of bi…  Anders Damsgaard
 (DIR) 2012-11-14 09:21  Made time step more conservative, valid…  Anders Damsgaard
 (DIR) 2012-11-13 19:36  Half-step leapfrog Verlet integration s…  Anders Damsgaard C…
 (DIR) 2012-11-13 15:04  Currently experimenting with integratio…  Anders Damsgaard
 (DIR) 2012-11-09 21:16  Added memtransfer and error checks        Anders Damsgaard C…
 (DIR) 2012-11-09 21:09  Added cudaMemcpy for linarr, fixed synt…  Anders Damsgaard C…
 (DIR) 2012-11-09 21:03  Changed type of linarr. Linarr still ne…  Anders Damsgaard C…
 (DIR) 2012-11-09 21:01  More color visualization methods added.   Anders Damsgaard C…
 (DIR) 2012-11-09 20:26  img_out and output folders are now made…  Anders Damsgaard C…
 (DIR) 2012-11-09 20:23  Raytracer incorporated into sphere prog…  Anders Damsgaard
 (DIR) 2012-11-08 11:31  The output number should be printed in …  Anders Damsgaard
 (DIR) 2012-11-08 11:25  Changed format for writing, and contact…  Anders Damsgaard
 (DIR) 2012-11-08 11:24  Changed order in params struct            Anders Damsgaard
 (DIR) 2012-11-08 11:24  Reformatted output                        Anders Damsgaard
 (DIR) 2012-11-06 13:26  Raytracer now working                     Anders Damsgaard
 (DIR) 2012-11-04 15:52  Raytracer included as cuh header file, …  Anders Damsgaard
 (DIR) 2012-11-04 12:05  More progress on implementing raytracer…  Anders Damsgaard
 (DIR) 2012-11-02 08:29  IO now works in Python, C++ and CUDA, s…  Anders Damsgaard
 (DIR) 2012-10-31 18:38  Bugfixes, however still segfaulting       Anders Damsgaard
 (DIR) 2012-10-31 07:59  Fixed typo                                Anders Damsgaard
 (DIR) 2012-10-31 07:58  Wall viscosities now in constant parame…  Anders Damsgaard
 (DIR) 2012-10-31 07:57  Added wall viscosities to wall contact …  Anders Damsgaard
 (DIR) 2012-10-30 14:14  Added cmd-line arg processing             Anders Damsgaard
 (DIR) 2012-10-30 12:35  All IO routines are now working correct…  Anders Damsgaard
 (DIR) 2012-10-29 13:21  File read in file_io.cpp not working. T…  Anders Damsgaard
 (DIR) 2012-10-29 12:41  Added custom compare function to Sphere…  Anders Damsgaard
 (DIR) 2012-10-28 20:42  Modified __init__ and IO functions of S…  Anders Damsgaard C…
 (DIR) 2012-10-26 22:37  It compiles without errors. Still need …  Anders Damsgaard
 (DIR) 2012-10-26 21:15  Changed to class type in free...          Anders Damsgaard C…
 (DIR) 2012-10-26 21:13  Bugfixes                                  Anders Damsgaard C…
 (DIR) 2012-10-26 21:09  Removed contact information output        Anders Damsgaard C…
 (DIR) 2012-10-26 21:08  Added destructor declaration              Anders Damsgaard C…
 (DIR) 2012-10-26 21:05  Further work on implementing OO           Anders Damsgaard C…
 (DIR) 2012-10-26 19:19  Restructuring code to OO                  Anders Damsgaard
 (DIR) 2012-10-26 14:01  Big restructuring, moving towards OO fo…  Anders Damsgaard
 (DIR) 2012-10-24 13:40  Removed nostats flag from ffmpeg flag     Anders Damsgaard
 (DIR) 2012-10-24 11:20  Added ffmpeg video() command to sphere …  Anders Damsgaard
 (DIR) 2012-10-23 12:09  Removed DEVCODE option                    Anders Damsgaard
 (DIR) 2012-10-23 12:08  Removed DEVCODE option                    Anders Damsgaard
 (DIR) 2012-10-23 08:42  Removed debug breakpoints                 Anders Damsgaard
 (DIR) 2012-10-23 07:59  Reordered output during const. mem. che…  Anders Damsgaard
 (DIR) 2012-10-22 18:42  cuPrintf calls removed                    Anders Damsgaard
 (DIR) 2012-10-22 18:41  Now with correct sizeof() parameter       Anders Damsgaard
 (DIR) 2012-10-22 12:28  Renamed gamma_ws to gamma_wt              Anders Damsgaard
 (DIR) 2012-10-22 09:37  gamma_ws renamed to gamma_wt              Anders Damsgaard
 (DIR) 2012-10-22 08:10  Most constant device parameters are mov…  Anders Damsgaard
 (DIR) 2012-10-19 14:53  Added cuda install path to makefile       Anders Damsgaard
 (DIR) 2012-10-19 14:11  Changed output format for profiling sta…  Anders Damsgaard
 (DIR) 2012-10-19 13:29  savefig=True as default in visualize()    Anders Damsgaard
 (DIR) 2012-10-19 07:57  Makefile updated, assuming nvcc is in t…  Anders Damsgaard
 (DIR) 2012-10-17 08:59  Profiling output now default ON           Anders Damsgaard
 (DIR) 2012-10-17 08:59  Finished implementation of Hertzian con…  Anders Damsgaard
 (DIR) 2012-10-16 15:23  Removed problematic symbols               Anders Damsgaard
 (DIR) 2012-10-16 15:07  contactLinear default                     Anders Damsgaard
 (DIR) 2012-10-16 14:26  Hertzian nonlinear contact model added.…  Anders Damsgaard
 (DIR) 2012-10-16 14:18  Fixed spring readjustment value in cont…  Anders Damsgaard
 (DIR) 2012-10-16 10:26  Expanded profiling information            Anders Damsgaard
 (DIR) 2012-10-15 13:02  Changed memory free calls                 Anders Damsgaard
 (DIR) 2012-10-15 12:29  Shearmodel=2 refinements                  Anders Damsgaard
 (DIR) 2012-10-12 09:41  Added default values to parameters in i…  Anders Damsgaard
 (DIR) 2012-10-12 08:42  Updated raytracer for angpos arrays       Anders Damsgaard
 (DIR) 2012-10-11 09:30  README updated                            Anders Damsgaard
 (DIR) 2012-10-11 09:05  Removed redundant zeroing of delta_t      Anders Damsgaard
 (DIR) 2012-10-11 07:28  Added angular position information in d…  Anders Damsgaard
 (DIR) 2012-10-11 06:51  Contactmodels changes                     Anders Damsgaard
 (DIR) 2012-10-10 09:37  Added break when contact is found in co…  Anders Damsgaard
 (DIR) 2012-10-10 09:30  Removed error message                     Anders Damsgaard
 (DIR) 2012-10-10 09:28  Possible major bugfix; reuse of old con…  Anders Damsgaard
 (DIR) 2012-10-10 09:02  Removed NC error reporting, an error ex…  Anders Damsgaard
 (DIR) 2012-10-10 08:50  Redirected error messages to stderr, an…  Anders Damsgaard
 (DIR) 2012-10-10 08:12  Added xsum visualization in raytracer     Anders Damsgaard
 (DIR) 2012-10-10 07:42  Multiplot rearrangement                   Anders Damsgaard
 (DIR) 2012-10-10 07:36  Removed trailing char                     Anders Damsgaard
 (DIR) 2012-10-10 07:35  Preallocation of Es and Es_dot in energ…  Anders Damsgaard
 (DIR) 2012-10-10 07:33  Added visualization method for viscous …  Anders Damsgaard
 (DIR) 2012-10-09 12:02  Dot product for finding path along force  Anders Damsgaard
 (DIR) 2012-10-09 11:58  Force length insted of vector in es_dot   Anders Damsgaard
 (DIR) 2012-10-09 11:56  Added energy loss calculation for norma…  Anders Damsgaard
 (DIR) 2012-10-09 07:33  Changed input algorithm for raytracer t…  Anders Damsgaard
 (DIR) 2012-10-04 18:44  Added ev and ev_dot arrays for energy l…  Anders Damsgaard
 (DIR) 2012-09-30 19:51  Removed rolling radius, substituted wit…  Anders Damsgaard
 (DIR) 2012-09-30 19:42  Added more syncthreads() to contactsear…  Anders Damsgaard
 (DIR) 2012-09-26 09:51  Changed units in sigma and tau from hPa…  Anders Damsgaard
 (DIR) 2012-09-26 09:45  Changed units in xdisp from cm to mm      Anders Damsgaard
 (DIR) 2012-09-26 09:10  Updated shear stress output to text file  Anders Damsgaard
 (DIR) 2012-09-26 08:20  Added text-file output for shear stress…  Anders Damsgaard
 (DIR) 2012-09-25 07:17  Merge branch 'master' of https://github…  Anders Damsgaard
 (DIR) 2012-09-25 07:17  shearmodel=2 now uses contactLinear       Anders Damsgaard
 (DIR) 2012-09-10 07:44  Reordered wall integration kernel         Anders Damsgaard
 (DIR) 2012-09-07 07:00  Substituted contactLinear with contactL…  Anders Damsgaard
 (DIR) 2012-09-06 12:50  Changed default parameter values          Anders Damsgaard
 (DIR) 2012-09-06 12:38  Removed precision reporting during file…  Anders Damsgaard
 (DIR) 2012-09-06 12:31  Re-enabled wmode in wall integration      Anders Damsgaard
 (DIR) 2012-09-06 12:22  Added missing [j] in sizeof operation d…  Anders Damsgaard
 (DIR) 2012-09-06 11:36  Renamed exec to run                       Anders Damsgaard
 (DIR) 2012-09-06 11:33  Added exec python function, which execu…  Anders Damsgaard
 (DIR) 2012-09-06 11:09  Added missing wmode write in single pre…  Anders Damsgaard
 (DIR) 2012-09-06 08:51  Bugfixes in porosity()                    Anders Damsgaard
 (DIR) 2012-09-06 06:43  wmode read disabled                       Anders Damsgaard
 (DIR) 2012-09-06 06:43  shearmodel=2 contact model back to cont…  Anders Damsgaard
 (DIR) 2012-09-06 06:33  Removed recursive option for make clear   Anders Damsgaard
 (DIR) 2012-09-06 06:28  Added porosity()                          Anders Damsgaard
 (DIR) 2012-09-05 07:51  Temporarily removed wmode=1 wall integr…  Anders Damsgaard
 (DIR) 2012-09-04 07:22  Temporarily replaced contactLinear with…  Anders Damsgaard
 (DIR) 2012-09-04 07:07  Replaced __umul24 multiplication functi…  Anders Damsgaard
 (DIR) 2012-09-03 12:35  Renamed N to F                            Anders Damsgaard
 (DIR) 2012-09-03 12:27  overlapsInCell renamed to findAndProces…  Anders Damsgaard
 (DIR) 2012-09-03 12:21  Changed name of force sum to F instead …  Anders Damsgaard
 (DIR) 2012-09-03 12:18  Added comments to contact search functi…  Anders Damsgaard
 (DIR) 2012-09-03 11:59  Added new raytracer makefile              Anders Damsgaard
 (DIR) 2012-08-30 12:04  Broad commit                              Anders Damsgaard
 (DIR) 2012-08-30 10:47  Added uniaxialStrainRate                  Anders Damsgaard
 (DIR) 2012-08-30 09:54  Added velocity BC to wall integration a…  Anders Damsgaard
 (DIR) 2012-08-30 09:47  Added missing &                           Anders Damsgaard
 (DIR) 2012-08-30 09:46  wmode added                               Anders Damsgaard
 (DIR) 2012-08-30 09:46  host_wmode removed                        Anders Damsgaard
 (DIR) 2012-08-30 09:36  wmode added                               Anders Damsgaard
 (DIR) 2012-08-30 09:34  wmode added                               Anders Damsgaard
 (DIR) 2012-08-30 09:34  Added wmode                               Anders Damsgaard
 (DIR) 2012-08-30 08:54  Wall mode parameter added                 Anders Damsgaard
 (DIR) 2012-08-30 07:18  Fixed indentation error                   Anders Damsgaard
 (DIR) 2012-08-29 13:13  Fixed breakline typo                      Anders Damsgaard
 (DIR) 2012-08-29 12:16  Added python script for uniaxial compre…  Anders Damsgaard
 (DIR) 2012-08-29 11:56  Added void ratio function                 Anders Damsgaard
 (DIR) 2012-08-28 07:47  PPM->JPEG conversion in parallel          Anders Damsgaard
 (DIR) 2012-08-28 06:34  Raytracer scripts updated to sequential…  Anders Damsgaard
 (DIR) 2012-08-27 15:17  Readme corrected                          Anders Damsgaard
 (DIR) 2012-08-27 14:51  Parameters k_s and gamma_s renamed to k…  Anders Damsgaard
 (DIR) 2012-08-27 12:15  Code cleanup                              Anders Damsgaard
 (DIR) 2012-08-27 11:51  Merged distmod routines into single fun…  Anders Damsgaard
 (DIR) 2012-08-24 07:44  Lowered default time step length          Anders Damsgaard
 (DIR) 2012-08-23 11:44  Changed default values of physical para…  Anders Damsgaard
 (DIR) 2012-08-23 11:25  Profiling flag set to 0 as default        Anders Damsgaard
 (DIR) 2012-08-23 08:27  Updated README, doc still outdated        Anders Damsgaard
 (DIR) 2012-08-23 08:20  Get CWD modifications                     Anders Damsgaard
 (DIR) 2012-08-23 08:17  Changed error return method and added p…  Anders Damsgaard
 (DIR) 2012-08-22 11:19  Updated sources                           Anders Damsgaard
 (DIR) 2012-08-20 14:39  Added missing o-ppm.cpp                   Anders Damsgaard
 (DIR) 2012-08-20 14:36  Major revision: Double precision, kerne…  Anders Damsgaard
 (DIR) 2012-04-16 13:20  Updated readme                            Anders Damsgaard C…
 (DIR) 2012-04-16 12:52  Several important bugfixes                Anders Damsgaard C…
 (DIR) 2012-02-23 11:19  Wall visualilzation changed               Anders Damsgaard C…
 (DIR) 2012-02-23 11:18  Elastc shearmodel fixed                   Anders Damsgaard C…
 (DIR) 2012-02-22 09:23  Public github launch                      Anders Damsgaard C…
 (DIR) 2020-03-24 13:15  Clean up readme for plain-text view       Anders Damsgaard
 (DIR) 2020-01-02 09:41  Update copyright notice                   Anders Damsgaard
 (DIR) 2019-12-10 12:42  Merge branch 'master' of src.adamsgaard…  Anders Damsgaard
 (DIR) 2019-12-10 12:42  Republish with ISC License                Anders Damsgaard
 (DIR) 2019-09-06 12:22  Drop .txt extension from LICENSE          Anders Damsgaard
 (DIR) 2019-09-02 13:31  Fix calculation of reynolds number and …  Anders Damsgaard
 (DIR) 2019-09-02 13:20  Fix continued line indentation            Anders Damsgaard
 (DIR) 2019-09-02 12:45  Perform many stylistic improvements bas…  Anders Damsgaard
 (DIR) 2019-09-02 09:30  Merge branch 'master' of gitlab.com:adm…  Anders Damsgaard
 (DIR) 2019-09-02 09:28  Update documentation, fix adjustWall do…  Anders Damsgaard
 (DIR) 2019-09-02 09:12  Only clean documentation output directo…  Anders Damsgaard
 (DIR) 2019-09-02 08:53  Update name and date                      Anders Damsgaard
 (DIR) 2019-09-02 08:50  Use snprintf over sprintf                 Anders Damsgaard
 (DIR) 2019-09-02 08:48  Use snprintf over sprintf                 Anders Damsgaard
 (DIR) 2019-09-02 08:06  Check if some output VTK file exist bef…  Anders Damsgaard
 (DIR) 2019-09-02 04:51  Fix ffmpeg arguments                      Anders Damsgaard
 (DIR) 2019-09-02 04:38  Use correct syntax when checking bools    Anders Damsgaard
 (DIR) 2019-09-02 04:35  Fix video functionality                   Anders Damsgaard
 (DIR) 2019-09-02 04:19  Use consistent format for function defi…  Anders Damsgaard
 (DIR) 2019-09-02 04:06  Matplotlib works as optional dependency…  Anders Damsgaard
 (DIR) 2019-08-22 09:06  Convert diagnostrics script to posix sh…  Anders Damsgaard
 (DIR) 2019-08-21 07:02  Disable wall viscosities by default       Anders Damsgaard
 (DIR) 2019-08-19 09:21  Update paraview custom filter             Anders Damsgaard
 (DIR) 2019-08-19 09:18  Add install note for vtk python module    Anders Damsgaard
 (DIR) 2019-08-15 14:43  Fix string split for python3              Anders Damsgaard
 (DIR) 2019-08-15 14:05  Fix scripts after changing np and nw to…  Anders Damsgaard
 (DIR) 2019-08-15 13:58  Fix py3 comparison between spherebin ob…  Anders Damsgaard
 (DIR) 2019-08-15 13:49  Begin implementing Python3 compability    Anders Damsgaard
 (DIR) 2019-04-27 12:27  Add support for CUDA compute capabiliti…  Anders Damsgaard
 (DIR) 2019-04-18 18:58  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2019-04-06 10:22  Spring cleaning: Remove old and unused …  Anders Damsgaard
 (DIR) 2018-04-13 16:01  Add options to smooth shear visualizati…  Anders Damsgaard
 (DIR) 2018-01-22 14:57  Add more grains and change length of co…  Anders Damsgaard
 (DIR) 2017-12-21 01:30  Add note on acknowledging sphere in pub…  Anders Damsgaard
 (DIR) 2017-12-21 01:28  Update publication list                   Anders Damsgaard
 (DIR) 2017-12-21 01:24  Set `nw` to int during `adjustUpperWall…  Anders Damsgaard
 (DIR) 2017-12-21 01:22  Update calls to `consolidate()` and `sh…  Anders Damsgaard
 (DIR) 2017-12-21 01:22  Add additional argument type enforcing    Anders Damsgaard
 (DIR) 2017-12-20 12:58  Add checkerboard colors, update status …  Anders Damsgaard
 (DIR) 2017-12-19 18:31  Decrease grain count, use log-normal PS…  Anders Damsgaard
 (DIR) 2017-12-19 18:25  Disable rendering, fix typos              Anders Damsgaard
 (DIR) 2017-12-19 18:24  Make sure np and nd are cast to ints      Anders Damsgaard
 (DIR) 2017-12-19 18:03  Add shear simulation with different ini…  Anders Damsgaard
 (DIR) 2017-10-28 16:52  add publicationt to README, add -fPIC t…  Anders Damsgaard
 (DIR) 2017-10-28 16:43  fix reStructuredText code block syntax    Anders Damsgaard
 (DIR) 2017-10-28 16:41  fix readability issue in README           Anders Damsgaard
 (DIR) 2017-10-18 13:28  fix comment for void ratio computation    Anders Damsgaard
 (DIR) 2017-09-08 18:55  remove tab characters                     Anders Damsgaard
 (DIR) 2017-09-08 14:29  update shear test example                 Anders Damsgaard
 (DIR) 2017-09-08 00:25  update documentation                      Anders Damsgaard
 (DIR) 2017-09-07 21:46  fix file path                             Anders Damsgaard
 (DIR) 2017-09-07 21:43  download helper_math.h from the net       Anders Damsgaard
 (DIR) 2017-09-07 20:09  rebuild documentation                     Anders Damsgaard
 (DIR) 2017-09-07 19:57  add note on clang-3.8 in README           Anders Damsgaard
 (DIR) 2017-09-07 19:54  fix various minor issues related to mem…  Anders Damsgaard
 (DIR) 2017-09-07 14:47  include string in header file             Anders Damsgaard
 (DIR) 2017-09-06 20:45  add -fPIC compiler flag                   Anders Damsgaard
 (DIR) 2017-09-06 20:33  set output path adequately                Anders Damsgaard
 (DIR) 2017-07-27 09:08  add script for J Glaciol manuscript       Anders Damsgaard
 (DIR) 2017-07-11 09:05  update contact information                Anders Damsgaard
 (DIR) 2017-06-20 01:13  fix additional problems with newest num…  Anders Damsgaard
 (DIR) 2017-06-19 23:54  fix problems in __init__ with newest nu…  Anders Damsgaard
 (DIR) 2017-06-02 18:04  add comment on how to visualize the for…  Anders Damsgaard
 (DIR) 2017-05-09 15:28  remove extra delta_t increase             Anders Damsgaard
 (DIR) 2017-02-23 23:05  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2017-02-23 23:04  add information on clusters               Anders Damsgaard
 (DIR) 2016-09-27 21:09  improve porosity estimation at top BC     Anders Damsgaard C…
 (DIR) 2016-09-20 16:57  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-09-20 16:56  fix function call                         Anders Damsgaard C…
 (DIR) 2016-09-13 16:59  fix density data type                     Anders Damsgaard C…
 (DIR) 2016-09-12 20:03  disable viscosities during consolidatio…  Anders Damsgaard C…
 (DIR) 2016-09-12 17:13  fix adaptive parameter type               Anders Damsgaard C…
 (DIR) 2016-09-12 16:43  fix rho data type                         Anders Damsgaard C…
 (DIR) 2016-09-09 23:06  decrease Young's modulus                  Anders Damsgaard C…
 (DIR) 2016-09-09 22:04  add fluid-creep experiment, add functio…  Anders Damsgaard C…
 (DIR) 2016-09-09 21:56  fix compressibility of water              Anders Damsgaard C…
 (DIR) 2016-09-09 19:53  add example values for Young's modulus    Anders Damsgaard C…
 (DIR) 2016-09-09 17:38  add test with adaptive fluid grid         Anders Damsgaard C…
 (DIR) 2016-09-09 17:16  fix wall indexation                       Anders Damsgaard C…
 (DIR) 2016-09-09 17:15  set total mass to equal grain mass duri…  Anders Damsgaard C…
 (DIR) 2016-09-08 20:47  fix grid height adaptation                Anders Damsgaard C…
 (DIR) 2016-09-02 22:45  add file I/O for readjusting the grid s…  Anders Damsgaard C…
 (DIR) 2016-09-02 22:39  implement first attempt at adaptive mes…  Anders Damsgaard C…
 (DIR) 2016-08-26 21:53  do not zero fluid-pressure gradient unl…  Anders Damsgaard C…
 (DIR) 2016-08-25 17:03  set dynamic wall mass to equal total gr…  Anders Damsgaard C…
 (DIR) 2016-08-24 18:39  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-08-24 18:23  only restrict f_p.z at top when there i…  Anders Damsgaard C…
 (DIR) 2016-08-16 19:45  decrease elastic stiffness for tests      Anders Damsgaard C…
 (DIR) 2016-08-16 19:12  add tests for contact model based on Yo…  Anders Damsgaard C…
 (DIR) 2016-08-16 19:10  report choice of contact stiffness mode…  Anders Damsgaard C…
 (DIR) 2016-08-16 18:56  fix minor implementation errors           Anders Damsgaard C…
 (DIR) 2016-08-16 18:52  use Youngs' modulus for scale-invariant…  Anders Damsgaard C…
 (DIR) 2016-08-12 20:59  complete test to verify horizontal pres…  Anders Damsgaard C…
 (DIR) 2016-08-12 20:18  change default side BC to periodic        Anders Damsgaard C…
 (DIR) 2016-08-12 20:04  set periodic as default lateral fluid BC  Anders Damsgaard C…
 (DIR) 2016-08-12 19:53  remove unused modules                     Anders Damsgaard C…
 (DIR) 2016-08-12 19:49  remove extra newlines                     Anders Damsgaard C…
 (DIR) 2016-08-12 19:43  only check particle positions when np>0   Anders Damsgaard C…
 (DIR) 2016-08-12 18:49  delete extra read                         Anders Damsgaard C…
 (DIR) 2016-08-12 18:45  print parameter name in comparison outp…  Anders Damsgaard C…
 (DIR) 2016-08-12 18:36  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-08-12 18:35  bugfixes                                  Anders Damsgaard C…
 (DIR) 2016-08-12 17:47  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-08-12 17:46  add test for fixed pressure BCs at X      Anders Damsgaard C…
 (DIR) 2016-08-11 23:01  add BC parameter to file/data structure…  Anders Damsgaard C…
 (DIR) 2016-08-11 18:50  pass new BC flags to cuda kernels         Anders Damsgaard C…
 (DIR) 2016-08-11 18:43  add Neumann BCs to iterative solution     Anders Damsgaard C…
 (DIR) 2016-08-11 18:39  add Neumann BC at side boundaries         Anders Damsgaard C…
 (DIR) 2016-08-11 18:36  add dirichlet BC for xy boundaries in D…  Anders Damsgaard C…
 (DIR) 2016-08-11 17:56  begin implementation of non-periodic x/…  Anders Damsgaard C…
 (DIR) 2016-06-17 16:51  add rs2 experiment generation script      Anders Damsgaard C…
 (DIR) 2016-06-17 16:46  delay velocity step 5s                    Anders Damsgaard C…
 (DIR) 2016-06-16 21:51  improve rate-state visualization          Anders Damsgaard C…
 (DIR) 2016-06-16 17:43  add script to visualize rs0 output        Anders Damsgaard C…
 (DIR) 2016-06-16 17:43  fix jobname prefix usage                  Anders Damsgaard C…
 (DIR) 2016-06-16 01:16  change domain size to equal other simul…  Anders Damsgaard C…
 (DIR) 2016-06-16 01:14  change particle count                     Anders Damsgaard C…
 (DIR) 2016-06-16 01:10  change world size, particle number, add…  Anders Damsgaard C…
 (DIR) 2016-06-16 00:30  add initialization and consolidation sc…  Anders Damsgaard C…
 (DIR) 2016-06-15 23:05  add fix for elevated porosities at fric…  Anders Damsgaard C…
 (DIR) 2016-06-15 22:41  revert to previous logic                  Anders Damsgaard C…
 (DIR) 2016-06-15 22:03  use dedicated function during porosity …  Anders Damsgaard C…
 (DIR) 2016-06-15 21:45  mirror particle grid for porosity estim…  Anders Damsgaard C…
 (DIR) 2016-06-14 14:45  add new rate-state generation script      Anders Damsgaard C…
 (DIR) 2016-06-13 16:17  decrease damping                          Anders Damsgaard
 (DIR) 2016-06-10 17:48  add function for total grain mass, add …  Anders Damsgaard C…
 (DIR) 2016-06-06 18:28  add script for faster high shear-strain…  Anders Damsgaard
 (DIR) 2016-06-04 23:46  fix cons simulation name                  Anders Damsgaard C…
 (DIR) 2016-06-04 23:42  read correct consolidation input          Anders Damsgaard C…
 (DIR) 2016-06-04 23:30  fix ref to effective stress               Anders Damsgaard C…
 (DIR) 2016-06-04 19:02  run on device 0                           Anders Damsgaard C…
 (DIR) 2016-06-04 18:55  add string delimiters to ID calls         Anders Damsgaard C…
 (DIR) 2016-06-04 15:13  add initialized packing of 10,000 parti…  Anders Damsgaard C…
 (DIR) 2016-06-04 15:11  add script for generating various preco…  Anders Damsgaard C…
 (DIR) 2016-06-04 15:11  Merge branch 'master' of github.com:and…  Anders Damsgaard C…
 (DIR) 2016-06-04 15:10  fix function calls                        Anders Damsgaard C…
 (DIR) 2016-06-02 22:56  generate python and slurm scripts         Anders Damsgaard C…
 (DIR) 2016-06-02 22:19  add preliminary job generation script     Anders Damsgaard C…
 (DIR) 2016-04-25 18:00  add new initialized particle cube         Anders Damsgaard C…
 (DIR) 2016-04-13 16:54  revert rate-state.py to orig, add new s…  Anders Damsgaard
 (DIR) 2016-04-13 16:53  increase shear velocity tenfold           Anders Damsgaard
 (DIR) 2016-04-08 19:38  increase velocity step factor to 10x      Anders Damsgaard
 (DIR) 2016-04-04 17:09  use cubic particle assemblage             Anders Damsgaard
 (DIR) 2016-04-04 16:43  fix velocity stepping                     Anders Damsgaard
 (DIR) 2016-04-01 16:52  increaste stiffness                       Anders Damsgaard
 (DIR) 2016-03-31 22:17  shorter simulation id for dry experimen…  Anders Damsgaard
 (DIR) 2016-03-31 22:16  change simulation id                      Anders Damsgaard
 (DIR) 2016-03-31 22:14  fix shear function call                   Anders Damsgaard
 (DIR) 2016-03-31 22:14  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2016-03-31 22:13  reduce N in channel experiment            Anders Damsgaard
 (DIR) 2016-03-05 17:22  fix effective stress magnitude in simul…  Anders Damsgaard
 (DIR) 2016-03-05 17:21  update figures for paper 3                Anders Damsgaard
 (DIR) 2016-03-05 17:21  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2016-03-05 17:21  add channel script                        Anders Damsgaard
 (DIR) 2016-02-26 19:03  improve fluid debugging output            Anders Damsgaard
 (DIR) 2016-02-25 23:42  also zero forces and torques, change fi…  Anders Damsgaard
 (DIR) 2016-02-16 18:20  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2016-02-16 18:20  remove specific call to gcc-4.6           Anders Damsgaard
 (DIR) 2016-02-09 23:29  add TCD publication info                  Anders Damsgaard
 (DIR) 2016-01-26 22:57  do not remove NS values when Darcian fl…  Anders Damsgaard
 (DIR) 2015-12-04 18:02  increase size of arrays                   Anders Damsgaard
 (DIR) 2015-09-25 09:07  add flux BC test                          Anders Damsgaard
 (DIR) 2015-09-23 08:10  fix compatibility with VTK 6              Anders Damsgaard
 (DIR) 2015-09-06 06:52  fix typo                                  Anders Damsgaard
 (DIR) 2015-09-06 06:51  add ref to tcd                            Anders Damsgaard
 (DIR) 2015-09-06 06:48  add note on cuda 7                        Anders Damsgaard
 (DIR) 2015-09-06 06:47  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2015-09-06 06:46  update readme                             Anders Damsgaard
 (DIR) 2015-06-16 07:18  fix visualization call                    Anders Damsgaard
 (DIR) 2015-06-16 07:09  update plots                              Anders Damsgaard
 (DIR) 2015-05-29 13:40  finish figure 3                           Anders Damsgaard
 (DIR) 2015-05-29 09:29  modify script for high N simulation       Anders Damsgaard
 (DIR) 2015-05-29 04:57  Removed erroneous character, thanks Eli!  Anders Damsgaard
 (DIR) 2015-05-27 13:42  improve combined plots                    Anders Damsgaard
 (DIR) 2015-05-25 14:31  add permeable variable shear rate exper…  Anders Damsgaard
 (DIR) 2015-05-25 13:03  add script to continue slow simulations   Anders Damsgaard
 (DIR) 2015-05-25 12:51  remove blank line, add slow shear exper…  Anders Damsgaard
 (DIR) 2015-05-21 14:25  add particle indexes to forcechain outp…  Anders Damsgaard
 (DIR) 2015-05-20 07:31  extend wip-varA2 simulations              Anders Damsgaard
 (DIR) 2015-05-20 07:29  update visualization calls                Anders Damsgaard
 (DIR) 2015-05-20 07:27  update initGridPos call                   Anders Damsgaard
 (DIR) 2015-05-20 07:25  update plots, shear test script           Anders Damsgaard
 (DIR) 2015-05-18 14:05  fix force chain axis limits               Anders Damsgaard
 (DIR) 2015-05-18 13:43  fix matplotlib call                       Anders Damsgaard
 (DIR) 2015-05-18 13:38  * python/sphere.py: add force chain plo…  Anders Damsgaard
 (DIR) 2015-05-18 12:18  add plot of contact angles                Anders Damsgaard
 (DIR) 2015-05-18 11:17  update histogram to log, plot creep sna…  Anders Damsgaard
 (DIR) 2015-05-18 09:57  add histograms to plotContacts            Anders Damsgaard
 (DIR) 2015-05-15 18:35  modify plotContacts to optional data ou…  Anders Damsgaard
 (DIR) 2015-05-15 11:06  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2015-05-15 11:06  add new wip sims                          Anders Damsgaard
 (DIR) 2015-05-14 18:13  fix xyzsum name                           Anders Damsgaard
 (DIR) 2015-05-14 17:52  add spatial scaling function              Anders Damsgaard
 (DIR) 2015-05-13 11:35  remove redundant whitespace               Anders Damsgaard
 (DIR) 2015-05-13 11:35  fix sids                                  Anders Damsgaard
 (DIR) 2015-05-12 19:22  fix order of matplotlib settings          Anders Damsgaard
 (DIR) 2015-05-12 19:18  fix order of matplotlib cmds              Anders Damsgaard
 (DIR) 2015-05-12 19:14  change default text size                  Anders Damsgaard
 (DIR) 2015-05-12 16:45  add original script                       Anders Damsgaard
 (DIR) 2015-05-11 08:43  extend simulation time                    Anders Damsgaard
 (DIR) 2015-05-11 08:42  extend simulation time                    Anders Damsgaard
 (DIR) 2015-05-06 12:52  Merge pull request #9 from gitter-badge…  Anders Damsgaard
 (DIR) 2015-05-06 12:22  change order of plots                     Anders Damsgaard
 (DIR) 2015-05-06 12:18  add shear strain figure with different …  Anders Damsgaard
 (DIR) 2015-05-06 11:38  improve shear strain legend text, fix f…  Anders Damsgaard
 (DIR) 2015-05-05 19:07  add extra simulations with larger A val…  Anders Damsgaard
 (DIR) 2015-04-28 13:27  fix simulation names                      Anders Damsgaard
 (DIR) 2015-04-24 00:03  add function for particle surface area    Anders Damsgaard
 (DIR) 2015-04-23 22:34  fix filename syntax                       Anders Damsgaard
 (DIR) 2015-04-23 20:30  add figures from simulations with N=80 …  Anders Damsgaard
 (DIR) 2015-04-23 16:54  fix amplitudes, add continue script       Anders Damsgaard
 (DIR) 2015-04-23 16:43  test different oscillation amplitudes     Anders Damsgaard
 (DIR) 2015-04-17 12:37  adjust smoothing plot                     Anders Damsgaard
 (DIR) 2015-04-17 12:36  don't plot last part of smoothed signal   Anders Damsgaard
 (DIR) 2015-04-16 11:47  add missing simulation starter script     Anders Damsgaard
 (DIR) 2015-04-16 11:18  fox filenames                             Anders Damsgaard
 (DIR) 2015-04-16 11:07  improve plot                              Anders Damsgaard
 (DIR) 2015-04-16 11:07  add shear tests with neumann bc on top    Anders Damsgaard
 (DIR) 2015-04-16 09:48  improve internals plot                    Anders Damsgaard
 (DIR) 2015-04-16 08:29  add colormap parameter                    Anders Damsgaard
 (DIR) 2015-04-16 08:05  hide filename output                      Anders Damsgaard
 (DIR) 2015-04-16 07:59  disable debug output                      Anders Damsgaard
 (DIR) 2015-04-16 07:59  add script to batch generate fluid pres…  Anders Damsgaard
 (DIR) 2015-04-16 07:58  add figsize parameter                     Anders Damsgaard
 (DIR) 2015-04-15 08:47  fix wrong permeabilities in continue sc…  Anders Damsgaard
 (DIR) 2015-04-15 08:32  added simulations for N=80kPa, decrease…  Anders Damsgaard
 (DIR) 2015-04-14 19:24  abbreviate intermediate                   Anders Damsgaard
 (DIR) 2015-04-14 19:21  add grid lines                            Anders Damsgaard
 (DIR) 2015-04-14 19:11  fix file name                             Anders Damsgaard
 (DIR) 2015-04-14 19:01  increase smoothing window                 Anders Damsgaard
 (DIR) 2015-04-14 18:58  change color of unsmoothed friction       Anders Damsgaard
 (DIR) 2015-04-14 18:56  change color of unsmoothed friction plot  Anders Damsgaard
 (DIR) 2015-04-14 18:54  allow the unsmoothed plot to go outside…  Anders Damsgaard
 (DIR) 2015-04-14 18:49  use hanning smoothing, widen smoothing …  Anders Damsgaard
 (DIR) 2015-04-14 18:03  improved figure                           Anders Damsgaard
 (DIR) 2015-04-14 18:02  remove grid lines                         Anders Damsgaard
 (DIR) 2015-04-14 17:47  improve stress plot w different permeab…  Anders Damsgaard
 (DIR) 2015-04-14 14:10  improve fluid plot                        Anders Damsgaard
 (DIR) 2015-04-14 14:02  improve friction,dilation,pressure vs r…  Anders Damsgaard
 (DIR) 2015-04-14 12:59  use seaborn to improve figures            Anders Damsgaard
 (DIR) 2015-04-14 11:04  improve shear strain plot                 Anders Damsgaard
 (DIR) 2015-04-14 09:34  add custom colormap                       Anders Damsgaard
 (DIR) 2015-04-13 12:16  added script to continue viscosity scal…  Anders Damsgaard
 (DIR) 2015-04-13 12:11  add more simulations with different vis…  Anders Damsgaard
 (DIR) 2015-04-10 12:05  do not categorize contacts between fixe…  Anders Damsgaard
 (DIR) 2015-04-10 11:28  fix animation call                        Anders Damsgaard
 (DIR) 2015-04-09 14:22  disable test data                         Anders Damsgaard
 (DIR) 2015-04-09 14:21  fix contact plot                          Anders Damsgaard
 (DIR) 2015-04-09 13:47  improve plot title                        Anders Damsgaard
 (DIR) 2015-04-09 09:15  close figures in order to avoid large m…  Anders Damsgaard
 (DIR) 2015-04-08 13:39  add format cmd                            Anders Damsgaard
 (DIR) 2015-04-08 13:31  add plotContacts and visualize('contact…  Anders Damsgaard
 (DIR) 2015-04-08 09:53  do not artificially increase porosity a…  Anders Damsgaard
 (DIR) 2015-03-31 11:25  set porosity ghost nodes                  Anders Damsgaard
 (DIR) 2015-03-31 11:22  implemented correction for spatial adve…  Anders Damsgaard
 (DIR) 2015-03-24 09:23  narrow porosity limits                    Anders Damsgaard
 (DIR) 2015-03-24 08:42  remove old end comment                    Anders Damsgaard
 (DIR) 2015-03-24 08:41  only find porosity in cfd time steps      Anders Damsgaard
 (DIR) 2015-03-24 08:40  use linear porosity estimation method     Anders Damsgaard
 (DIR) 2015-03-24 08:16  revert to porosity change forcing, keep…  Anders Damsgaard
 (DIR) 2015-03-23 13:21  fix neighbor cell indexes                 Anders Damsgaard
 (DIR) 2015-03-23 11:38  find porosities before pressure force     Anders Damsgaard
 (DIR) 2015-03-23 10:10  fix particle velocity divergence functi…  Anders Damsgaard
 (DIR) 2015-03-20 14:34  use local neighbor cell center coordina…  Anders Damsgaard
 (DIR) 2015-03-20 13:12  disable diagnostic output, decrease max…  Anders Damsgaard
 (DIR) 2015-03-20 13:10  disable diagnostic output                 Anders Damsgaard
 (DIR) 2015-03-20 13:10  improve formatting                        Anders Damsgaard
 (DIR) 2015-03-20 13:09  add grid dimensions to registers          Anders Damsgaard
 (DIR) 2015-03-20 12:56  do not read gradient values at ghost no…  Anders Damsgaard
 (DIR) 2015-03-20 10:40  change sign on every 2nd value            Anders Damsgaard
 (DIR) 2015-03-20 10:40  decrease factor to be added               Anders Damsgaard
 (DIR) 2015-03-20 10:32  refine test                               Anders Damsgaard
 (DIR) 2015-03-20 10:31  update fluid interaction test             Anders Damsgaard
 (DIR) 2015-03-20 10:25  disable debug information                 Anders Damsgaard
 (DIR) 2015-03-20 09:22  various fixes                             Anders Damsgaard
 (DIR) 2015-03-20 09:08  add pressure gradient array               Anders Damsgaard
 (DIR) 2015-03-20 08:33  remove old, commented code                Anders Damsgaard
 (DIR) 2015-03-20 08:32  iterate over 27 closest cells             Anders Damsgaard
 (DIR) 2015-03-19 18:49  disable debug output                      Anders Damsgaard
 (DIR) 2015-03-19 18:49  avoid division by zero                    Anders Damsgaard
 (DIR) 2015-03-19 15:34  small bugfixes                            Anders Damsgaard
 (DIR) 2015-03-19 15:32  use linear and staggered force interpol…  Anders Damsgaard
 (DIR) 2015-03-19 15:16  use particle velocity divergence as for…  Anders Damsgaard
 (DIR) 2015-03-19 14:45  find particle velocity divergence with …  Anders Damsgaard
 (DIR) 2015-03-19 12:46  fix distance calculation                  Anders Damsgaard
 (DIR) 2015-03-19 12:21  add sphere volume device function and l…  Anders Damsgaard
 (DIR) 2015-03-17 11:58  add cyclic impermeable experiment, chan…  Anders Damsgaard
 (DIR) 2015-03-12 20:56  revert to blues colorscheme               Anders Damsgaard
 (DIR) 2015-03-12 20:55  do not plot by default                    Anders Damsgaard
 (DIR) 2015-03-12 20:50  do not plot by default                    Anders Damsgaard
 (DIR) 2015-03-12 19:25  show velocity instead of porosity, read…  Anders Damsgaard
 (DIR) 2015-03-12 19:04  add various displacement types            Anders Damsgaard
 (DIR) 2015-03-12 14:49  add script to continue simulations        Anders Damsgaard
 (DIR) 2015-03-12 14:46  added script for cyclic experiments on …  Anders Damsgaard
 (DIR) 2015-03-12 14:31  fix velocity limit                        Anders Damsgaard
 (DIR) 2015-03-04 09:49  remove redundant lines                    Anders Damsgaard
 (DIR) 2015-03-03 14:27  save stresses as cell data, add firstst…  Anders Damsgaard
 (DIR) 2015-03-02 14:06  remove trailing zero                      Anders Damsgaard
 (DIR) 2015-03-02 13:22  add plot of rate vs. dilation             Anders Damsgaard
 (DIR) 2015-03-02 12:30  remove typo                               Anders Damsgaard
 (DIR) 2015-03-02 12:29  use current value instead of defined no…  Anders Damsgaard
 (DIR) 2015-03-02 12:24  add plot of inertia parameter             Anders Damsgaard
 (DIR) 2015-03-02 12:15  shearVel as alias of shearVelocity        Anders Damsgaard
 (DIR) 2015-02-27 11:20  improve readTime function                 Anders Damsgaard
 (DIR) 2015-02-27 10:42  added function to read a specified time   Anders Damsgaard
 (DIR) 2015-02-26 09:35  add additional fit                        Anders Damsgaard
 (DIR) 2015-02-25 14:44  remove temporary underrelaxation scaling  Anders Damsgaard
 (DIR) 2015-02-25 09:50  add script to show and fit stress-strai…  Anders Damsgaard
 (DIR) 2015-02-25 09:38  copy file to article graphics folder      Anders Damsgaard
 (DIR) 2015-02-25 09:26  add global lienwidth parameter            Anders Damsgaard
 (DIR) 2015-02-24 20:10  set label color accordingly               Anders Damsgaard
 (DIR) 2015-02-24 19:56  add scripts for new figures               Anders Damsgaard
 (DIR) 2015-02-24 12:02  refer to correct object                   Anders Damsgaard
 (DIR) 2015-02-24 12:01  only use x-axis force component           Anders Damsgaard
 (DIR) 2015-02-24 10:09  add function to return current shear ve…  Anders Damsgaard
 (DIR) 2015-02-24 10:00  add function to find cell index of wall…  Anders Damsgaard
 (DIR) 2015-02-24 09:51  improve functionality for determining s…  Anders Damsgaard
 (DIR) 2015-02-24 09:49  raise exception if unknown type is spec…  Anders Damsgaard
 (DIR) 2015-02-24 09:48  add option to return either defined or …  Anders Damsgaard
 (DIR) 2015-02-23 09:40  add force chain statistics script         Anders Damsgaard
 (DIR) 2015-02-23 09:04  add thin border to dots                   Anders Damsgaard
 (DIR) 2015-02-20 14:50  add functions to calculate coordination…  Anders Damsgaard
 (DIR) 2015-02-20 13:19  add function to visualize particles dir…  Anders Damsgaard
 (DIR) 2015-02-20 10:54  add parameters to docstring               Anders Damsgaard
 (DIR) 2015-02-20 10:47  optionally write contact force VTK files  Anders Damsgaard
 (DIR) 2015-02-20 10:41  add function to visualize force chains    Anders Damsgaard
 (DIR) 2015-02-20 08:08  add function to find loaded contacts      Anders Damsgaard
 (DIR) 2015-02-19 13:04  fix sign issue in contact area computat…  Anders Damsgaard
 (DIR) 2015-02-19 12:48  contact area instead of contact radius    Anders Damsgaard
 (DIR) 2015-02-19 12:46  remove redundant newline                  Anders Damsgaard
 (DIR) 2015-02-19 12:45  add functions to find contact areas and…  Anders Damsgaard
 (DIR) 2015-02-18 10:17  remove redundant parantheses              Anders Damsgaard
 (DIR) 2015-02-18 08:48  add function to input/output current si…  Anders Damsgaard
 (DIR) 2015-02-18 08:16  remove abundant newlines                  Anders Damsgaard
 (DIR) 2015-02-17 13:44  choose better colormap, decrease height…  Anders Damsgaard
 (DIR) 2015-02-17 13:29  improve shearStrainRate function, use s…  Anders Damsgaard
 (DIR) 2015-02-17 13:24  improve shearStrain function              Anders Damsgaard
 (DIR) 2015-02-17 12:45  add colored dots to visualize progressi…  Anders Damsgaard
 (DIR) 2015-02-17 12:06  add method to visualize sediment rate d…  Anders Damsgaard
 (DIR) 2015-02-17 11:33  refer to self                             Anders Damsgaard
 (DIR) 2015-02-17 11:32  refer to self                             Anders Damsgaard
 (DIR) 2015-02-16 12:49  add timefactor to fluid viscosity         Anders Damsgaard
 (DIR) 2015-02-16 12:21  adjust xlimits in plots                   Anders Damsgaard
 (DIR) 2015-02-13 14:05  add time factor                           Anders Damsgaard
 (DIR) 2015-02-11 14:11  switch device and fluid parameter place…  Anders Damsgaard
 (DIR) 2015-02-10 20:46  add shading during stick periods          Anders Damsgaard
 (DIR) 2015-02-10 20:08  fix typo                                  Anders Damsgaard
 (DIR) 2015-02-10 19:59  enable grids                              Anders Damsgaard
 (DIR) 2015-02-10 19:58  remove xticks on middle plot              Anders Damsgaard
 (DIR) 2015-02-10 19:52  refer to correct velocity array           Anders Damsgaard
 (DIR) 2015-02-10 19:36  add plot with shear velocities            Anders Damsgaard
 (DIR) 2015-02-10 07:57  add new sim, change appearance of shear…  Anders Damsgaard
 (DIR) 2015-02-09 14:29  permeability BC suitable for shear stre…  Anders Damsgaard
 (DIR) 2015-02-09 13:18  fix x axis limits                         Anders Damsgaard
 (DIR) 2015-02-09 13:17  remove odd multiplication                 Anders Damsgaard
 (DIR) 2015-02-09 13:14  add x axis limits to visualize function   Anders Damsgaard
 (DIR) 2015-02-06 10:22  remove debug output                       Anders Damsgaard
 (DIR) 2015-02-06 10:12  disable legends in two lower plots        Anders Damsgaard
 (DIR) 2015-02-06 10:01  add script to plot macroscopic properti…  Anders Damsgaard
 (DIR) 2015-02-06 09:46  increase width of energy plots            Anders Damsgaard
 (DIR) 2015-02-04 15:03  extend dirichlet BC one cell further do…  Anders Damsgaard
 (DIR) 2015-02-02 14:02  return as scalar                          Anders Damsgaard
 (DIR) 2015-02-02 14:02  return result                             Anders Damsgaard
 (DIR) 2015-02-02 14:02  improve permeability estimation function  Anders Damsgaard
 (DIR) 2015-02-02 13:57  return and store values                   Anders Damsgaard
 (DIR) 2015-01-31 09:27  add transparancy to shear-displacement …  Anders Damsgaard
 (DIR) 2015-01-31 09:22  change color of shear stress              Anders Damsgaard
 (DIR) 2015-01-31 09:20  plot sigma0, fix currentNormalStress fu…  Anders Damsgaard
 (DIR) 2015-01-31 09:09  add fluid forcing to plot                 Anders Damsgaard
 (DIR) 2015-01-30 10:41  improved color bar range                  Anders Damsgaard
 (DIR) 2015-01-30 10:25  add visualization method for porosities   Anders Damsgaard
 (DIR) 2015-01-28 13:48  rename color to Type color in order to …  Anders Damsgaard
 (DIR) 2015-01-27 12:38  added optional dump of figure to pickle   Anders Damsgaard
 (DIR) 2015-01-27 12:25  read correct objects                      Anders Damsgaard
 (DIR) 2015-01-27 11:11  refer to previously read object           Anders Damsgaard
 (DIR) 2015-01-27 10:50  improve plot layout                       Anders Damsgaard
 (DIR) 2015-01-27 10:19  check wmode in sb object                  Anders Damsgaard
 (DIR) 2015-01-27 08:29  fluid modulation 180 phase shifted        Anders Damsgaard
 (DIR) 2015-01-27 08:04  phase shift is in radians                 Anders Damsgaard
 (DIR) 2015-01-23 10:46  fix x axis limits                         Anders Damsgaard
 (DIR) 2015-01-23 10:09  refer to correct parameter                Anders Damsgaard
 (DIR) 2015-01-23 09:24  read modulation from current object ins…  Anders Damsgaard
 (DIR) 2015-01-23 08:44  update label conditional                  Anders Damsgaard
 (DIR) 2015-01-23 08:43  use time as x axis if experiment is str…  Anders Damsgaard
 (DIR) 2015-01-23 08:31  rearrange profiling call                  Anders Damsgaard
 (DIR) 2015-01-23 08:30  determine initial fluid pressure at sta…  Anders Damsgaard
 (DIR) 2015-01-22 14:12  allow propagation of top wall fluid pre…  Anders Damsgaard
 (DIR) 2015-01-22 11:37  use a single legend                       Anders Damsgaard
 (DIR) 2015-01-22 09:34  close figures after plotting              Anders Damsgaard
 (DIR) 2015-01-22 09:30  change line styles                        Anders Damsgaard
 (DIR) 2015-01-22 09:16  add missing }                             Anders Damsgaard
 (DIR) 2015-01-22 09:03  remove commented lines                    Anders Damsgaard
 (DIR) 2015-01-22 09:00  move dp=0 one iz upwards, may change pr…  Anders Damsgaard
 (DIR) 2015-01-22 08:44  return as scalar                          Anders Damsgaard
 (DIR) 2015-01-22 08:42  different plot when normal stress is mo…  Anders Damsgaard
 (DIR) 2015-01-21 11:41  improve plot geometry                     Anders Damsgaard
 (DIR) 2015-01-21 11:40  show pressure in Pascal                   Anders Damsgaard
 (DIR) 2015-01-21 11:39  add base value to plot. call modulation…  Anders Damsgaard
 (DIR) 2015-01-21 10:40  assign values to correct variables        Anders Damsgaard
 (DIR) 2015-01-21 10:39  added script for simulations with modul…  Anders Damsgaard
 (DIR) 2015-01-20 10:51  add grid by default                       Anders Damsgaard
 (DIR) 2015-01-20 10:51  add plot style parameter                  Anders Damsgaard
 (DIR) 2015-01-20 10:48  specify parameter type                    Anders Damsgaard
 (DIR) 2015-01-20 10:44  plot pressure values in kPa               Anders Damsgaard
 (DIR) 2015-01-20 10:41  add baseval value and close plot          Anders Damsgaard
 (DIR) 2015-01-20 09:59  add plot parameter                        Anders Damsgaard
 (DIR) 2015-01-20 09:38  add function to plot modulation           Anders Damsgaard
 (DIR) 2015-01-20 08:37  add cross references in docstrings        Anders Damsgaard
 (DIR) 2015-01-20 08:36  add functions for setting sigma0 fluctu…  Anders Damsgaard
 (DIR) 2015-01-19 10:29  change second line color to blue          Anders Damsgaard
 (DIR) 2015-01-19 10:27  color y axis ticks                        Anders Damsgaard
 (DIR) 2015-01-19 10:26  fix line and axis colors                  Anders Damsgaard
 (DIR) 2015-01-19 10:20  print filename when saving figure in vi…  Anders Damsgaard
 (DIR) 2015-01-19 09:10  fix indentation                           Anders Damsgaard
 (DIR) 2015-01-19 09:10  added function to modulate fluid pressu…  Anders Damsgaard
 (DIR) 2015-01-19 08:58  fix typo                                  Anders Damsgaard
 (DIR) 2015-01-19 08:57  add dirichlet BC fix for top wall for d…  Anders Damsgaard
 (DIR) 2015-01-19 08:55  fix dirichlet bc at dynamic top wall      Anders Damsgaard
 (DIR) 2015-01-19 08:41  top wall bc set by wmode not bc_top       Anders Damsgaard
 (DIR) 2015-01-19 08:31  enforce dirichlet pressure BC when bc_t…  Anders Damsgaard
 (DIR) 2015-01-16 13:41  remove grid for shared x-axis             Anders Damsgaard
 (DIR) 2015-01-15 14:58  add scripts to continue simulations aft…  Anders Damsgaard
 (DIR) 2015-01-15 14:50  add scripts to run shear stress experim…  Anders Damsgaard
 (DIR) 2015-01-15 12:48  modify line colors                        Anders Damsgaard
 (DIR) 2015-01-15 12:47  fix fluid pressure plotting               Anders Damsgaard
 (DIR) 2015-01-15 09:51  Add method to visualize shear-displacem…  Anders Damsgaard
 (DIR) 2015-01-14 14:15  describe shear stress boundary condition  Anders Damsgaard
 (DIR) 2015-01-14 14:06  modulate fluid pressure at top wall       Anders Damsgaard
 (DIR) 2015-01-14 14:00  expand shear() to setup stress-controll…  Anders Damsgaard
 (DIR) 2015-01-14 13:53  add else clause for old files             Anders Damsgaard
 (DIR) 2015-01-14 13:18  topy                                      Anders Damsgaard
 (DIR) 2015-01-14 13:17  add conference presentations              Anders Damsgaard
 (DIR) 2015-01-14 13:05  add note on particles who are not part …  Anders Damsgaard
 (DIR) 2015-01-14 12:57  fix syntax                                Anders Damsgaard
 (DIR) 2015-01-14 12:54  implement shear stress BC                 Anders Damsgaard
 (DIR) 2015-01-14 12:39  incorporate shear stress BC in integrat…  Anders Damsgaard
 (DIR) 2015-01-14 12:22  reformulate comment                       Anders Damsgaard
 (DIR) 2015-01-14 12:21  renamed tau_eff to tau_eff_x to reflect…  Anders Damsgaard
 (DIR) 2015-01-14 11:22  rename wall shear stress from tau to ta…  Anders Damsgaard
 (DIR) 2015-01-14 09:04  add linear array of wall shear stresses   Anders Damsgaard
 (DIR) 2015-01-14 09:00  add wall shear stress parameter           Anders Damsgaard
 (DIR) 2015-01-14 08:44  version no in separate file, rename dev…  Anders Damsgaard
 (DIR) 2015-01-14 08:38  rename devs to sigma0                     Anders Damsgaard
 (DIR) 2015-01-13 08:27  add a few files                           Anders Damsgaard
 (DIR) 2015-01-12 12:36  noflow BC at dynamic top wall if bc_top…  Anders Damsgaard
 (DIR) 2015-01-12 12:35  improve plot appearance                   Anders Damsgaard
 (DIR) 2015-01-09 14:08  change default color map                  Anders Damsgaard
 (DIR) 2015-01-09 14:06  improve 'fluid-pressure' visualization    Anders Damsgaard
 (DIR) 2015-01-09 13:37  improve 'fluid-pressure' visualization …  Anders Damsgaard
 (DIR) 2015-01-09 12:56  do not raise exception if radii can be …  Anders Damsgaard
 (DIR) 2015-01-09 12:51  read first input file if no information…  Anders Damsgaard
 (DIR) 2015-01-08 13:34  add fluid pressure plotting functions     Anders Damsgaard
 (DIR) 2015-01-07 12:35  disable Dirichlet at top wall             Anders Damsgaard
 (DIR) 2015-01-07 12:31  fix ghost node set                        Anders Damsgaard
 (DIR) 2015-01-07 10:42  fix non-Dirichlet BC solution             Anders Damsgaard
 (DIR) 2015-01-07 10:39  Use custom ranges for simulations, chan…  Anders Damsgaard
 (DIR) 2015-01-06 11:27  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2015-01-06 11:27  update script to visualize internal val…  Anders Damsgaard
 (DIR) 2014-12-28 17:26  added experimental fft analysis           Anders Damsgaard
 (DIR) 2014-12-22 14:08  update paths to osx                       Anders Damsgaard
 (DIR) 2014-12-22 14:04  change legend text                        Anders Damsgaard
 (DIR) 2014-12-02 08:50  add units to particle vtk files           Anders Damsgaard
 (DIR) 2014-11-27 19:47  reenable shearing motion                  Anders Damsgaard
 (DIR) 2014-11-27 09:24  extend dirichlet BC to one cell beneath…  Anders Damsgaard
 (DIR) 2014-11-27 08:36  extend top BC in pressure force one cel…  Anders Damsgaard
 (DIR) 2014-11-26 13:55  remove neumann BC at top wall             Anders Damsgaard
 (DIR) 2014-11-26 10:37  fix conditional statement                 Anders Damsgaard
 (DIR) 2014-11-26 10:34  disregard backward euler estimate in fi…  Anders Damsgaard
 (DIR) 2014-11-26 10:31  use central differences for porosity ch…  Anders Damsgaard
 (DIR) 2014-11-26 08:41  approximate porosity change by forward …  Anders Damsgaard
 (DIR) 2014-11-24 13:52  dphi should be 0 in first iteration       Anders Damsgaard
 (DIR) 2014-11-24 13:44  add docstring on verbose flag             Anders Damsgaard
 (DIR) 2014-11-24 13:43  revert to old limits for phi, add verbo…  Anders Damsgaard
 (DIR) 2014-11-24 13:39  new phi boundaries                        Anders Damsgaard
 (DIR) 2014-11-24 13:36  disable output in porosity calculations   Anders Damsgaard
 (DIR) 2014-11-24 13:35  set dphi after div_v_p                    Anders Damsgaard
 (DIR) 2014-11-24 13:30  fix periodic boundaries when determinin…  Anders Damsgaard
 (DIR) 2014-11-24 11:01  fix sign error in velocity divergence t…  Anders Damsgaard
 (DIR) 2014-11-20 10:43  use particle velocity divergence as flu…  Anders Damsgaard
 (DIR) 2014-11-19 12:54  change pressure force to fit with Navie…  Anders Damsgaard
 (DIR) 2014-11-19 11:18  use fluid density from cpu struct         Anders Damsgaard
 (DIR) 2014-11-19 11:17  add bouyancy to particles in darcy solv…  Anders Damsgaard
 (DIR) 2014-11-18 09:35  extend f_p.z=0 one cell downwards         Anders Damsgaard
 (DIR) 2014-11-17 10:26  added scripts to resume simulations       Anders Damsgaard
 (DIR) 2014-11-17 10:15  add missing pressure read                 Anders Damsgaard
 (DIR) 2014-11-17 10:14  refine top fluid gradient bc              Anders Damsgaard
 (DIR) 2014-11-17 10:12  add scripts to perform shear experiment…  Anders Damsgaard
 (DIR) 2014-11-17 09:47  add velocity scaling factor               Anders Damsgaard
 (DIR) 2014-11-17 09:29  disable unused read                       Anders Damsgaard
 (DIR) 2014-11-17 09:28  disable vertical pressure forces at the…  Anders Damsgaard
 (DIR) 2014-11-13 11:44  extend neumann bc condition in pressure…  Anders Damsgaard
 (DIR) 2014-11-13 08:10  use forward differnce for pressure grad…  Anders Damsgaard
 (DIR) 2014-11-13 08:07  update pressure definition to 1st order…  Anders Damsgaard
 (DIR) 2014-11-13 08:06  update call to findDarcyPressureForce     Anders Damsgaard
 (DIR) 2014-11-13 08:05  add Neumann BC at top wall                Anders Damsgaard
 (DIR) 2014-11-13 08:03  add Neumann BC at top wall                Anders Damsgaard
 (DIR) 2014-11-12 19:59  add publication list                      Anders Damsgaard
 (DIR) 2014-11-12 13:21  optimize damping output and K and k info  Anders Damsgaard
 (DIR) 2014-11-12 13:17  fix typo                                  Anders Damsgaard
 (DIR) 2014-11-12 13:16  display values at a porosity of 0.3       Anders Damsgaard
 (DIR) 2014-11-12 13:03  fix IO of dphi values                     Anders Damsgaard
 (DIR) 2014-11-12 12:28  se built-in dtype argument instead of p…  Anders Damsgaard
 (DIR) 2014-11-12 10:48  fix reference to gravity                  Anders Damsgaard
 (DIR) 2014-11-12 10:47  write hydraulic conductivities to VTK f…  Anders Damsgaard
 (DIR) 2014-11-12 10:33  use more convenient type conversion fun…  Anders Damsgaard
 (DIR) 2014-11-12 10:31  convergence data as integers              Anders Damsgaard
 (DIR) 2014-11-12 10:28  add functions to read convergence evolu…  Anders Damsgaard
 (DIR) 2014-11-12 09:52  use crank-nicolson scheme as default      Anders Damsgaard
 (DIR) 2014-11-12 09:09  add dp_expl to debug output               Anders Damsgaard
 (DIR) 2014-11-12 09:04  adjustable integration method, implicit…  Anders Damsgaard
 (DIR) 2014-11-10 15:14  quiet run                                 Anders Damsgaard
 (DIR) 2014-11-10 15:13  improve dirichlet formulation             Anders Damsgaard
 (DIR) 2014-11-10 14:28  debugging darcy tests, improve solution…  Anders Damsgaard
 (DIR) 2014-11-10 12:32  udpate to new default pressure            Anders Damsgaard
 (DIR) 2014-11-10 12:27  update for default values, quiet run      Anders Damsgaard
 (DIR) 2014-11-10 12:25  update to default pressure value          Anders Damsgaard
 (DIR) 2014-11-10 11:56  update pressure conservation test to ne…  Anders Damsgaard
 (DIR) 2014-11-10 11:51  add test title output                     Anders Damsgaard
 (DIR) 2014-11-10 11:49  disable vtk output, avoid divide by zer…  Anders Damsgaard
 (DIR) 2014-11-10 11:47  avoid divide by zero in inviscid fluid    Anders Damsgaard
 (DIR) 2014-11-10 09:40  fluid pressure zero by default            Anders Damsgaard
 (DIR) 2014-11-10 09:38  write vtk files, only show info output …  Anders Damsgaard
 (DIR) 2014-11-10 09:15  add pressure perturbation test, do not …  Anders Damsgaard
 (DIR) 2014-11-10 09:03  few grammar edits                         Anders Damsgaard
 (DIR) 2014-11-09 20:14  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2014-11-09 20:13  disable debug output, add experimental …  Anders Damsgaard
 (DIR) 2014-11-09 09:55  update pressure update debug output       Anders Damsgaard
 (DIR) 2014-11-07 13:00  only set dphi if relevant                 Anders Damsgaard
 (DIR) 2014-11-07 12:54  make sure dphi values are saved in outp…  Anders Damsgaard
 (DIR) 2014-11-07 12:08  decrease porosity control volume radius…  Anders Damsgaard
 (DIR) 2014-11-07 12:02  add missing <                             Anders Damsgaard
 (DIR) 2014-11-07 11:57  fix indentation errors                    Anders Damsgaard
 (DIR) 2014-11-07 11:41  disable fixvel, example not functional    Anders Damsgaard
 (DIR) 2014-11-07 10:38  set ndem to 1 for fluidization tests      Anders Damsgaard
 (DIR) 2014-11-07 10:35  add functions for setting fluid paramet…  Anders Damsgaard
 (DIR) 2014-11-07 08:44  use correct ndem value, add ndem test     Anders Damsgaard
 (DIR) 2014-11-06 14:45  implemented ndem functionality into Dar…  Anders Damsgaard
 (DIR) 2014-11-06 13:43  adjust max. permeability value accordin…  Anders Damsgaard
 (DIR) 2014-11-06 13:43  fix error in max permeability value       Anders Damsgaard
 (DIR) 2014-11-06 12:58  debugging stability issues                Anders Damsgaard
 (DIR) 2014-11-06 12:17  check CFL criteria only                   Anders Damsgaard
 (DIR) 2014-11-06 12:17  use the courant criteria when determini…  Anders Damsgaard
 (DIR) 2014-11-06 11:50  fix fluid time step, add shear            Anders Damsgaard
 (DIR) 2014-11-06 11:47  improve time step selection logic         Anders Damsgaard
 (DIR) 2014-11-06 11:36  add advection stability check             Anders Damsgaard
 (DIR) 2014-11-06 10:15  use hardcoded limits for fluid time step  Anders Damsgaard
 (DIR) 2014-11-06 09:59  adjust porosity range to better estimat…  Anders Damsgaard
 (DIR) 2014-11-06 09:54  start error with newline, debug shear e…  Anders Damsgaard
 (DIR) 2014-11-06 09:49  fix fluid solver value                    Anders Damsgaard
 (DIR) 2014-11-06 09:48  report fluid solver choice                Anders Damsgaard
 (DIR) 2014-11-06 09:15  improve time step computing functionali…  Anders Damsgaard
 (DIR) 2014-11-06 09:02  add functions to set frictional coeffic…  Anders Damsgaard
 (DIR) 2014-11-05 18:39  include dynamic wall test                 Anders Damsgaard
 (DIR) 2014-11-05 14:42  fix porosity calculation issues           Anders Damsgaard
 (DIR) 2014-11-05 14:37  fix calls to generateRadii                Anders Damsgaard
 (DIR) 2014-11-05 14:36  add note on fluid simulation              Anders Damsgaard
 (DIR) 2014-11-05 14:31  fix markdown                              Anders Damsgaard
 (DIR) 2014-11-05 14:29  do not write vtk files and cleanup file…  Anders Damsgaard
 (DIR) 2014-11-05 14:27  add note on Darcy solver initialization   Anders Damsgaard
 (DIR) 2014-11-05 14:25  Merge pull request #8 from anders-dc/da…  Anders Damsgaard
 (DIR) 2014-10-28 08:35  remove `c_a` parameter and reuse the sl…  Anders Damsgaard
 (DIR) 2014-10-27 10:43  fix legend                                Anders Damsgaard
 (DIR) 2014-10-27 10:33  fix grid                                  Anders Damsgaard
 (DIR) 2014-10-27 10:31  do not label irrelevant axis              Anders Damsgaard
 (DIR) 2014-10-27 10:20  improve labels and plotting sequence      Anders Damsgaard
 (DIR) 2014-10-27 10:19  correct output file name                  Anders Damsgaard
 (DIR) 2014-10-27 10:14  only plot zflow if fluid=True             Anders Damsgaard
 (DIR) 2014-10-27 10:13  avoid division by zero                    Anders Damsgaard
 (DIR) 2014-10-27 10:09  added script to investigate rate depend…  Anders Damsgaard
 (DIR) 2014-10-24 13:50  change to set 2                           Anders Damsgaard
 (DIR) 2014-10-24 11:51  add scripts with different velocity sca…  Anders Damsgaard
 (DIR) 2014-10-24 11:44  add starter scripts with new fluid scal…  Anders Damsgaard
 (DIR) 2014-10-24 11:06  update halfshear starter script to new …  Anders Damsgaard
 (DIR) 2014-10-24 09:58  rename test with zero advection and vel…  Anders Damsgaard
 (DIR) 2014-10-24 09:48  update equations for c_v and c_a          Anders Damsgaard
 (DIR) 2014-10-23 09:59  correct run calls                         Anders Damsgaard
 (DIR) 2014-10-23 09:56  use default device                        Anders Damsgaard
 (DIR) 2014-10-23 09:52  c_grad_p replaced by velocity scaling t…  Anders Damsgaard
 (DIR) 2014-10-22 13:36  long neumann test                         Anders Damsgaard
 (DIR) 2014-10-22 13:33  disable epsilon output                    Anders Damsgaard
 (DIR) 2014-10-22 12:20  disable cfd debug output                  Anders Damsgaard
 (DIR) 2014-10-22 12:19  set velocity BCs on predicted values as…  Anders Damsgaard
 (DIR) 2014-10-22 09:47  modify debug output                       Anders Damsgaard
 (DIR) 2014-10-22 09:06  output old velocities                     Anders Damsgaard
 (DIR) 2014-10-22 08:35  correct velocity gradient at bottom neu…  Anders Damsgaard
 (DIR) 2014-10-21 13:46  add units to VTK array names              Anders Damsgaard
 (DIR) 2014-10-21 13:34  set ghost nodes in epsilon no matter if…  Anders Damsgaard
 (DIR) 2014-10-21 12:28  debugging neumann test                    Anders Damsgaard
 (DIR) 2014-10-21 07:26  fix debug output conditional statement    Anders Damsgaard
 (DIR) 2014-10-21 07:25  enabled debug output of corrector term    Anders Damsgaard
 (DIR) 2014-10-20 14:10  decrease v_f_z tolerance, shorten test …  Anders Damsgaard
 (DIR) 2014-10-20 13:24  updated SET_2 equations                   Anders Damsgaard
 (DIR) 2014-10-20 11:29  improve plots, remove stray tabs          Anders Damsgaard
 (DIR) 2014-10-17 08:09  updated plots                             Anders Damsgaard
 (DIR) 2014-10-17 08:09  added scripts to continue velocity fact…  Anders Damsgaard
 (DIR) 2014-10-14 12:28  added wet velocity factor experiments     Anders Damsgaard
 (DIR) 2014-10-14 12:16  fix arguments                             Anders Damsgaard
 (DIR) 2014-10-14 11:55  add torque script for dry velocity fact…  Anders Damsgaard
 (DIR) 2014-10-14 11:50  add script to launch halfshear exp with…  Anders Damsgaard
 (DIR) 2014-10-14 11:50  reselect output                           Anders Damsgaard
 (DIR) 2014-10-14 11:49  fix vtk files                             Anders Damsgaard
 (DIR) 2014-10-14 11:49  do not overwrite 00000 output file if i…  Anders Damsgaard
 (DIR) 2014-10-14 09:23  fix reynolds number calculation, add Re…  Anders Damsgaard
 (DIR) 2014-10-13 09:25  improve pressure time series plots        Anders Damsgaard
 (DIR) 2014-10-13 08:42  add results from c=0.01                   Anders Damsgaard
 (DIR) 2014-10-13 07:31  optimize runtime by disabling of unwant…  Anders Damsgaard
 (DIR) 2014-10-12 17:50  update ns solver equations                Anders Damsgaard
 (DIR) 2014-10-12 14:55  do not run tests with c=0.1               Anders Damsgaard
 (DIR) 2014-10-12 14:35  c_grad_p fixes, do not specify device, …  Anders Damsgaard
 (DIR) 2014-10-12 14:11  revised velocity prediction, velocity c…  Anders Damsgaard
 (DIR) 2014-10-10 08:15  use reformulated forcing function, remo…  Anders Damsgaard
 (DIR) 2014-10-09 13:35  add c_grad_p to forcing function          Anders Damsgaard
 (DIR) 2014-10-08 10:18  add script to analyze peak and ultimate…  Anders Damsgaard
 (DIR) 2014-10-08 09:59  improve plots, relabel from ultimate to…  Anders Damsgaard
 (DIR) 2014-10-07 14:16  add c value to label                      Anders Damsgaard
 (DIR) 2014-10-07 14:14  newline in annotation                     Anders Damsgaard
 (DIR) 2014-10-07 14:12  fix annotation                            Anders Damsgaard
 (DIR) 2014-10-07 14:02  annotate state                            Anders Damsgaard
 (DIR) 2014-10-07 13:53  improve plots                             Anders Damsgaard
 (DIR) 2014-10-07 12:33  improved plots                            Anders Damsgaard
 (DIR) 2014-10-06 12:53  add new plot                              Anders Damsgaard
 (DIR) 2014-10-06 11:22  scale pressure gradient force with c_gr…  Anders Damsgaard
 (DIR) 2014-10-03 13:45  add annotations to pressures, improve p…  Anders Damsgaard
 (DIR) 2014-10-02 19:30  remove redundant newline                  Anders Damsgaard
 (DIR) 2014-10-02 19:27  do not intialize cuda and check values …  Anders Damsgaard
 (DIR) 2014-10-02 18:14  improved plot                             Anders Damsgaard
 (DIR) 2014-10-02 18:05  improve plot appearance                   Anders Damsgaard
 (DIR) 2014-10-02 17:54  improve plots                             Anders Damsgaard
 (DIR) 2014-10-02 11:54  added script to start shear2 simulations  Anders Damsgaard
 (DIR) 2014-10-02 11:52  apply normal stress, do not create visu…  Anders Damsgaard
 (DIR) 2014-10-01 11:13  add dry and wet functions                 Anders Damsgaard
 (DIR) 2014-10-01 10:39  visualize mean pressures as time series…  Anders Damsgaard
 (DIR) 2014-10-01 08:00  improved plots                            Anders Damsgaard
 (DIR) 2014-09-30 13:12  small fixes, findOverlaps works           Anders Damsgaard
 (DIR) 2014-09-30 13:07  added findOverlaps in sphere.py (untest…  Anders Damsgaard
 (DIR) 2014-09-30 12:51  add functionality to list inter-particl…  Anders Damsgaard
 (DIR) 2014-09-30 12:35  use more appropriate truth comparisons    Anders Damsgaard
 (DIR) 2014-09-30 12:32  only remove fluid parameters in wet sim…  Anders Damsgaard
 (DIR) 2014-09-30 08:04  print critical damping value              Anders Damsgaard
 (DIR) 2014-09-30 07:41  add warning system to avoid over-dampen…  Anders Damsgaard
 (DIR) 2014-09-30 07:02  still improving plot, added starter for…  Anders Damsgaard
 (DIR) 2014-09-25 08:52  better approximate the actual steady-st…  Anders Damsgaard
 (DIR) 2014-09-25 07:52  allow selection of several particles in…  Anders Damsgaard
 (DIR) 2014-09-24 11:47  fix range in shear plot, improve fc plo…  Anders Damsgaard
 (DIR) 2014-09-24 08:55  plot force chains in a time series        Anders Damsgaard
 (DIR) 2014-09-24 08:31  use lighter gray                          Anders Damsgaard
 (DIR) 2014-09-24 08:28  add parameter to scale line thicknesses   Anders Damsgaard
 (DIR) 2014-09-24 08:25  correct white color                       Anders Damsgaard
 (DIR) 2014-09-24 08:18  colorscale white to black                 Anders Damsgaard
 (DIR) 2014-09-24 08:15  use BW colorscale for force chain visua…  Anders Damsgaard
 (DIR) 2014-09-24 08:09  read noshear file as input when c_grad_…  Anders Damsgaard
 (DIR) 2014-09-23 14:18  forcechains function in pure python aba…  Anders Damsgaard
 (DIR) 2014-09-23 13:43  implementing forcechains2d plot in sphe…  Anders Damsgaard
 (DIR) 2014-09-22 19:26  fix self reference                        Anders Damsgaard
 (DIR) 2014-09-22 13:10  set velocity to zero above dynamic wall   Anders Damsgaard
 (DIR) 2014-09-19 13:44  old formulation of wall stress            Anders Damsgaard
 (DIR) 2014-09-19 13:32  corrected BCs at top wall                 Anders Damsgaard
 (DIR) 2014-09-19 12:57  remove dp_dz output                       Anders Damsgaard
 (DIR) 2014-09-19 12:56  remove p debug output                     Anders Damsgaard
 (DIR) 2014-09-19 12:55  added Dirichlet and Neumann BC at the d…  Anders Damsgaard
 (DIR) 2014-09-19 09:33  remove comment                            Anders Damsgaard
 (DIR) 2014-09-19 09:19  set wall devs value in consolidate func…  Anders Damsgaard
 (DIR) 2014-09-19 09:19  add pressure set in jacobi loop           Anders Damsgaard
 (DIR) 2014-09-19 09:16  devs should still be set, add function …  Anders Damsgaard
 (DIR) 2014-09-16 07:31  added relatively light-weight shear exp…  Anders Damsgaard
 (DIR) 2014-09-16 07:27  set default value of frictional coeffic…  Anders Damsgaard
 (DIR) 2014-09-16 07:22  add function to set simulation id         Anders Damsgaard
 (DIR) 2014-09-16 07:19  run consolidation with heavy wall inste…  Anders Damsgaard
 (DIR) 2014-09-16 07:16  use output with heavy wall                Anders Damsgaard
 (DIR) 2014-09-15 13:02  increase wall mass instead of applying …  Anders Damsgaard
 (DIR) 2014-09-12 10:38  add reynolds number function              Anders Damsgaard
 (DIR) 2014-09-11 12:24  fancy legends, fix consolidation plot     Anders Damsgaard
 (DIR) 2014-09-11 10:41  improve plot appearance, fix max pressu…  Anders Damsgaard
 (DIR) 2014-09-10 08:18  plotting of several steps works, shear …  Anders Damsgaard
 (DIR) 2014-09-10 07:30  take a single step, define as input arg   Anders Damsgaard
 (DIR) 2014-09-09 13:40  improved plots with means and porosities  Anders Damsgaard
 (DIR) 2014-09-09 13:11  add latex labels                          Anders Damsgaard
 (DIR) 2014-09-09 12:47  improve plot                              Anders Damsgaard
 (DIR) 2014-09-09 12:42  add script to plot shear zone internals   Anders Damsgaard
 (DIR) 2014-09-09 11:31  add min, mean and max pressures to shea…  Anders Damsgaard
 (DIR) 2014-09-09 11:16  increase simulation time to 20 s          Anders Damsgaard
 (DIR) 2014-09-09 08:34  dilation values already normalized in s…  Anders Damsgaard
 (DIR) 2014-09-09 08:31  reenable grid                             Anders Damsgaard
 (DIR) 2014-09-09 08:29  disable grid                              Anders Damsgaard
 (DIR) 2014-09-09 08:27  dimensionless dilation in dry results     Anders Damsgaard
 (DIR) 2014-09-09 08:24  ignore first set of values                Anders Damsgaard
 (DIR) 2014-09-09 08:22  dimensionless dilation                    Anders Damsgaard
 (DIR) 2014-09-09 07:42  adjust grid size before initializing fl…  Anders Damsgaard
 (DIR) 2014-09-09 07:23  remove invalid arg                        Anders Damsgaard
 (DIR) 2014-09-09 07:20  adjust grid height properly               Anders Damsgaard
 (DIR) 2014-09-09 07:09  increase grid height                      Anders Damsgaard
 (DIR) 2014-09-09 07:06  add script showing shear stress and dil…  Anders Damsgaard
 (DIR) 2014-09-09 07:05  set legend font size                      Anders Damsgaard
 (DIR) 2014-09-08 08:27  several bugfixes in shear visualization   Anders Damsgaard
 (DIR) 2014-09-08 07:40  remove compressed file                    Anders Damsgaard
 (DIR) 2014-09-08 07:39  remove old diagnostics file if it exists  Anders Damsgaard
 (DIR) 2014-09-05 09:59  save values from shear visualization in…  Anders Damsgaard
 (DIR) 2014-09-05 09:39  added wet shear scripts                   Anders Damsgaard
 (DIR) 2014-09-05 08:52  added script to continue dry shear expe…  Anders Damsgaard
 (DIR) 2014-09-05 08:16  added script to continue simulation whe…  Anders Damsgaard
 (DIR) 2014-09-04 13:50  copy plots to article folder              Anders Damsgaard
 (DIR) 2014-09-04 11:45  fix axis selection for disabling numeri…  Anders Damsgaard
 (DIR) 2014-09-04 11:42  improve diffusivity plot, time in conti…  Anders Damsgaard
 (DIR) 2014-09-04 10:37  finalize plotting routine                 Anders Damsgaard
 (DIR) 2014-09-04 10:37  save mean porosity value                  Anders Damsgaard
 (DIR) 2014-09-04 10:35  added script to continue simulations wh…  Anders Damsgaard
 (DIR) 2014-09-03 07:56  added job script generating function fo…  Anders Damsgaard
 (DIR) 2014-09-02 12:30  add lo_visc to sid                        Anders Damsgaard
 (DIR) 2014-09-02 12:29  decrease viscosity consistent with scal…  Anders Damsgaard
 (DIR) 2014-09-02 12:28  decrease viscosity                        Anders Damsgaard
 (DIR) 2014-09-02 07:21  do not call plotEvolution                 Anders Damsgaard
 (DIR) 2014-09-02 07:08  increased frictional coefficient          Anders Damsgaard
 (DIR) 2014-09-02 07:07  increased frictional coefficients         Anders Damsgaard
 (DIR) 2014-09-01 14:20  fix function refs                         Anders Damsgaard
 (DIR) 2014-09-01 14:19  fix function references                   Anders Damsgaard
 (DIR) 2014-09-01 14:12  fix peak strength text                    Anders Damsgaard
 (DIR) 2014-09-01 14:07  altered appearance of shear plot          Anders Damsgaard
 (DIR) 2014-09-01 12:56  set sigma0                                Anders Damsgaard
 (DIR) 2014-09-01 12:50  fix typo in function name                 Anders Damsgaard
 (DIR) 2014-09-01 12:45  updated documentation                     Anders Damsgaard
 (DIR) 2014-09-01 12:44  added shearStrainRate and inertiaParame…  Anders Damsgaard
 (DIR) 2014-09-01 12:22  set sid according to fluid presence       Anders Damsgaard
 (DIR) 2014-09-01 11:50  fix typo                                  Anders Damsgaard
 (DIR) 2014-09-01 11:47  use input files with short sid            Anders Damsgaard
 (DIR) 2014-09-01 11:45  added shear tests                         Anders Damsgaard
 (DIR) 2014-09-01 11:40  plot evolution, improve shear starter     Anders Damsgaard
 (DIR) 2014-09-01 11:24  visual formatting                         Anders Damsgaard
 (DIR) 2014-09-01 11:24  ignore results with c=0.01 that are inf…  Anders Damsgaard
 (DIR) 2014-09-01 11:21  added capillary model from Richefeu 200…  Anders Damsgaard
 (DIR) 2014-09-01 11:21  use results from tall experiments         Anders Damsgaard
 (DIR) 2014-09-01 10:45  fix dimensions, add missing initTempora…  Anders Damsgaard
 (DIR) 2014-09-01 09:29  fix object name                           Anders Damsgaard
 (DIR) 2014-09-01 09:27  initialize grid                           Anders Damsgaard
 (DIR) 2014-09-01 09:21  flip grid indexing                        Anders Damsgaard
 (DIR) 2014-09-01 09:03  translate particles                       Anders Damsgaard
 (DIR) 2014-09-01 09:02  fix typo                                  Anders Damsgaard
 (DIR) 2014-09-01 08:57  add scaling                               Anders Damsgaard
 (DIR) 2014-09-01 08:47  only add fluid force vectors if fluid=t…  Anders Damsgaard
 (DIR) 2014-09-01 08:44  added alternative script to test capill…  Anders Damsgaard
 (DIR) 2014-09-01 08:43  fix device                                Anders Damsgaard
 (DIR) 2014-09-01 07:09  run gravity-free simulation on starting…  Anders Damsgaard
 (DIR) 2014-09-01 06:56  uniform psd                               Anders Damsgaard
 (DIR) 2014-08-29 13:24  append nograv if gravity == 0             Anders Damsgaard
 (DIR) 2014-08-29 13:23  add gravity flag                          Anders Damsgaard
 (DIR) 2014-08-29 13:09  rename sid during collapse                Anders Damsgaard
 (DIR) 2014-08-29 13:01  added script for simulating capillary c…  Anders Damsgaard
 (DIR) 2014-08-29 11:52  change c values                           Anders Damsgaard
 (DIR) 2014-08-29 11:51  -tall as job name suffix                  Anders Damsgaard
 (DIR) 2014-08-29 11:50  increase height of fluid grid             Anders Damsgaard
 (DIR) 2014-08-29 11:47  add output when sim isn't found, increa…  Anders Damsgaard
 (DIR) 2014-08-29 08:44  add disclaimer on GPU platform            Anders Damsgaard
 (DIR) 2014-08-29 08:42  move legend, add permeability results w…  Anders Damsgaard
 (DIR) 2014-08-27 10:48  read from 5kPa simulation with identica…  Anders Damsgaard
 (DIR) 2014-08-27 10:42  reset fluid to hydrostatic pressure dis…  Anders Damsgaard
 (DIR) 2014-08-27 09:10  just modify w_devs value and leave rest…  Anders Damsgaard
 (DIR) 2014-08-27 09:09  do not adjust upper wall                  Anders Damsgaard
 (DIR) 2014-08-27 09:08  disable fluid initialization              Anders Damsgaard
 (DIR) 2014-08-27 09:06  improve plot                              Anders Damsgaard
 (DIR) 2014-08-27 08:28  disable normalization while simulations…  Anders Damsgaard
 (DIR) 2014-08-27 08:18  increase total time to 10s                Anders Damsgaard
 (DIR) 2014-08-27 08:16  plot results for all c values             Anders Damsgaard
 (DIR) 2014-08-27 08:12  add scripts for consolidation curve plot  Anders Damsgaard
 (DIR) 2014-08-27 08:04  normalize the thickness change            Anders Damsgaard
 (DIR) 2014-08-27 07:50  scripts to interpret permeability and d…  Anders Damsgaard
 (DIR) 2014-08-26 14:01  add gcc --version                         Anders Damsgaard
 (DIR) 2014-08-26 13:33  disable epsilon output                    Anders Damsgaard
 (DIR) 2014-08-26 13:32  do not calculate all velocity component…  Anders Damsgaard
 (DIR) 2014-08-26 11:42  reorganize synchronization points         Anders Damsgaard
 (DIR) 2014-08-26 11:08  add comment, upgrade constant floating …  Anders Damsgaard
 (DIR) 2014-08-26 08:50  compress output file                      Anders Damsgaard
 (DIR) 2014-08-26 08:45  add attachment info                       Anders Damsgaard
 (DIR) 2014-08-26 08:41  slight change of output                   Anders Damsgaard
 (DIR) 2014-08-26 08:32  modify report string                      Anders Damsgaard
 (DIR) 2014-08-26 08:32  show message to user                      Anders Damsgaard
 (DIR) 2014-08-26 08:30  clear OUTFILE on first output             Anders Damsgaard
 (DIR) 2014-08-26 08:27  do not list contents of output folder     Anders Damsgaard
 (DIR) 2014-08-26 08:25  add nvcc version call                     Anders Damsgaard
 (DIR) 2014-08-26 08:25  added diagnostics script                  Anders Damsgaard
 (DIR) 2014-08-21 11:46  extend time of diffusion experiments      Anders Damsgaard
 (DIR) 2014-08-21 11:44  quiet reads                               Anders Damsgaard
 (DIR) 2014-08-21 11:43  disable debug output                      Anders Damsgaard
 (DIR) 2014-08-21 11:29  do not visualize in starter script        Anders Damsgaard
 (DIR) 2014-08-21 11:09  decrease shear velocity                   Anders Damsgaard
 (DIR) 2014-08-21 11:08  use consolidation experiments with c=1.…  Anders Damsgaard
 (DIR) 2014-08-21 10:47  added shear simulation starter script     Anders Damsgaard
 (DIR) 2014-08-21 10:46  use built-in coloring function            Anders Damsgaard
 (DIR) 2014-08-21 10:44  fix device selection                      Anders Damsgaard
 (DIR) 2014-08-21 10:43  fix device selection                      Anders Damsgaard
 (DIR) 2014-08-21 10:40  add checkerboard color function           Anders Damsgaard
 (DIR) 2014-08-21 10:35  added shear test job scripts              Anders Damsgaard
 (DIR) 2014-08-21 09:32  let matplotlib handle color               Anders Damsgaard
 (DIR) 2014-08-21 09:31  plot results from variable c, dpdz and …  Anders Damsgaard
 (DIR) 2014-08-21 09:04  script to interpret and plot consolidat…  Anders Damsgaard
 (DIR) 2014-08-21 09:03  set coefficients                          Anders Damsgaard
 (DIR) 2014-08-21 07:21  disable text output                       Anders Damsgaard
 (DIR) 2014-08-21 07:20  improved plot quality                     Anders Damsgaard
 (DIR) 2014-08-20 07:30  fix loop behavior                         Anders Damsgaard
 (DIR) 2014-08-18 09:56  Interpret results from permeability{1-3…  Anders Damsgaard
 (DIR) 2014-08-15 17:51  fixed out-of-grid errors in porosity es…  Anders Damsgaard
 (DIR) 2014-08-15 10:01  storing fluid interaction force compone…  Anders Damsgaard
 (DIR) 2014-08-14 13:59  remove linear plot                        Anders Damsgaard
 (DIR) 2014-08-14 13:58  improved porosity estimation. Interpola…  Anders Damsgaard
 (DIR) 2014-08-14 13:44  improved docstring                        Anders Damsgaard
 (DIR) 2014-08-14 12:55  small corrections                         Anders Damsgaard
 (DIR) 2014-08-14 12:53  calculate consolidation coefficient and…  Anders Damsgaard
 (DIR) 2014-08-14 12:05  change data appearance                    Anders Damsgaard
 (DIR) 2014-08-14 11:54  add lines noting D0, D50 and D100         Anders Damsgaard
 (DIR) 2014-08-14 11:50  add function to plot load path            Anders Damsgaard
 (DIR) 2014-08-14 08:59  rename job name                           Anders Damsgaard
 (DIR) 2014-08-14 08:58  new scripts to test diffusivity           Anders Damsgaard
 (DIR) 2014-08-14 08:51  fix setting of loads                      Anders Damsgaard
 (DIR) 2014-08-13 12:52  add cell size calculation                 Anders Damsgaard
 (DIR) 2014-08-13 12:47  correct simulation id                     Anders Damsgaard
 (DIR) 2014-08-13 12:32  correct pbs job name                      Anders Damsgaard
 (DIR) 2014-08-13 12:18  explore relationship between c_grad_p a…  Anders Damsgaard
 (DIR) 2014-08-13 12:08  increase time in permeability experimen…  Anders Damsgaard
 (DIR) 2014-08-13 12:02  fix lowermost particles so everything d…  Anders Damsgaard
 (DIR) 2014-08-13 11:54  fix format type of color                  Anders Damsgaard
 (DIR) 2014-08-13 11:32  create vtk files in separate loop         Anders Damsgaard
 (DIR) 2014-08-13 11:32  fix vtk output for particles              Anders Damsgaard
 (DIR) 2014-08-13 10:48  dont create plots of temporal evolution   Anders Damsgaard
 (DIR) 2014-08-13 10:30  return vertical hydraulic conductivity    Anders Damsgaard
 (DIR) 2014-08-13 09:53  preallocate arrays                        Anders Damsgaard
 (DIR) 2014-08-13 09:46  save figure, do not show                  Anders Damsgaard
 (DIR) 2014-08-13 09:32  improved result analysis script           Anders Damsgaard
 (DIR) 2014-08-13 09:22  rename calculator file                    Anders Damsgaard
 (DIR) 2014-08-13 09:20  separate files for calculator and calcu…  Anders Damsgaard
 (DIR) 2014-08-13 09:09  increase damping                          Anders Damsgaard
 (DIR) 2014-08-13 09:06  improved readability of hydraulic condu…  Anders Damsgaard
 (DIR) 2014-08-13 08:01  improved output plot                      Anders Damsgaard
 (DIR) 2014-08-13 07:30  fix typo                                  Anders Damsgaard
 (DIR) 2014-08-13 07:30  added plot file name output               Anders Damsgaard
 (DIR) 2014-08-13 07:29  added permeability calculator             Anders Damsgaard
 (DIR) 2014-08-11 12:47  initialize constants to double precisio…  Anders Damsgaard
 (DIR) 2014-08-11 12:37  add const and __restrict__ keywords to …  Anders Damsgaard
 (DIR) 2014-08-11 08:16  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2014-08-11 08:10  replaced .format with % expressions to …  Anders Damsgaard
 (DIR) 2014-07-30 11:42  increase width of sid field in list out…  Anders Damsgaard
 (DIR) 2014-07-30 10:37  initialize c_phi and c_grad_phi as arra…  Anders Damsgaard
 (DIR) 2014-07-30 10:33  add another c_grad_p value simulation     Anders Damsgaard
 (DIR) 2014-07-30 10:31  added simulations with different c_grad…  Anders Damsgaard
 (DIR) 2014-07-30 10:28  added another porosity test               Anders Damsgaard
 (DIR) 2014-07-30 10:27  update job name                           Anders Damsgaard
 (DIR) 2014-07-30 10:26  added permeability experiments with 10%…  Anders Damsgaard
 (DIR) 2014-07-30 10:22  reenable run                              Anders Damsgaard
 (DIR) 2014-07-30 10:21  improved argument handling                Anders Damsgaard
 (DIR) 2014-07-30 09:35  universal starter for permeability expe…  Anders Damsgaard
 (DIR) 2014-07-30 08:41  fix less particles on bottom right wall   Anders Damsgaard
 (DIR) 2014-07-29 12:14  fix sign                                  Anders Damsgaard
 (DIR) 2014-07-29 12:10  added set of missing grid corner cell-f…  Anders Damsgaard
 (DIR) 2014-07-28 13:51  set default values for c_phi and c_grad…  Anders Damsgaard
 (DIR) 2014-07-28 13:38  increment version number                  Anders Damsgaard
 (DIR) 2014-07-28 13:36  add scaling coefficients c_phi and c_gr…  Anders Damsgaard
 (DIR) 2014-07-28 12:44  add long cmd line arg                     Anders Damsgaard
 (DIR) 2014-07-28 12:43  updated readme                            Anders Damsgaard
 (DIR) 2014-07-28 09:38  reenable other calls                      Anders Damsgaard
 (DIR) 2014-07-28 09:35  change to cudaSetDevice call              Anders Damsgaard
 (DIR) 2014-07-28 09:28  do not run tests on Grendel               Anders Damsgaard
 (DIR) 2014-07-28 09:25  add information on automatically chosen…  Anders Damsgaard
 (DIR) 2014-07-28 09:00  correct constructor call, add error mes…  Anders Damsgaard
 (DIR) 2014-07-28 08:56  remove exclusive flag, choose device on…  Anders Damsgaard
 (DIR) 2014-07-28 08:25  run in exclusive mode for Grendel         Anders Damsgaard
 (DIR) 2014-07-28 08:23  add exclusive parameter to run function   Anders Damsgaard
 (DIR) 2014-07-28 08:20  only print device info if verbose flag …  Anders Damsgaard
 (DIR) 2014-07-28 08:12  add initial value to fluidarg             Anders Damsgaard
 (DIR) 2014-07-28 08:01  fix typo                                  Anders Damsgaard
 (DIR) 2014-07-28 08:01  fix more typos                            Anders Damsgaard
 (DIR) 2014-07-28 07:59  fix typo                                  Anders Damsgaard
 (DIR) 2014-07-28 07:58  do not generate separate binary for por…  Anders Damsgaard
 (DIR) 2014-07-28 07:30  add exclusive command line argument to …  Anders Damsgaard
 (DIR) 2014-07-12 14:36  reintroduce 10 DEM steps per CFD step     Anders Damsgaard
 (DIR) 2014-07-11 10:37  set ndem=1                                Anders Damsgaard
 (DIR) 2014-07-11 10:36  decreased ndem to standard value (1)      Anders Damsgaard
 (DIR) 2014-07-07 06:28  reversed order of release notes           Anders Damsgaard
 (DIR) 2014-07-07 06:25  added note on fluid discretization        Anders Damsgaard
 (DIR) 2014-07-05 15:21  corrected input file name, increase max…  Anders Damsgaard
 (DIR) 2014-07-04 17:15  added template for shear experiments      Anders Damsgaard
 (DIR) 2014-07-04 15:16  added scripts and Torque script for dif…  Anders Damsgaard
 (DIR) 2014-07-04 13:08  add Torque job scripts for two examples   Anders Damsgaard
 (DIR) 2014-07-04 13:04  do not write vtk files as default         Anders Damsgaard
 (DIR) 2014-07-04 13:04  add input file for diffusivity experime…  Anders Damsgaard
 (DIR) 2014-07-04 13:02  split permeability experiments into two…  Anders Damsgaard
 (DIR) 2014-07-04 13:00  fixed permeability test                   Anders Damsgaard
 (DIR) 2014-07-04 12:44  added tests for hydrological parameters   Anders Damsgaard
 (DIR) 2014-06-30 10:46  removed failing copy of constant memory…  Anders Damsgaard
 (DIR) 2014-06-30 10:43  working on multi-GPU call for interact …  Anders Damsgaard
 (DIR) 2014-06-30 08:53  copy constant memory to all devices       Anders Damsgaard
 (DIR) 2014-06-30 08:20  double precision comparison               Anders Damsgaard
 (DIR) 2014-06-30 08:18  slight rearranging of output              Anders Damsgaard
 (DIR) 2014-06-30 08:13  cleanup contactmodels.cuh, label in/out…  Anders Damsgaard
 (DIR) 2014-06-30 08:04  dynamically select GPU with most cuda c…  Anders Damsgaard
 (DIR) 2014-06-30 07:21  particle vtk files can be written witho…  Anders Damsgaard
 (DIR) 2014-06-28 13:19  run sphere quietly                        Anders Damsgaard
 (DIR) 2014-06-28 13:11  write interpolated velocities             Anders Damsgaard
 (DIR) 2014-06-28 13:06  Neumann tests pass                        Anders Damsgaard
 (DIR) 2014-06-28 12:59  fix host side vidx                        Anders Damsgaard
 (DIR) 2014-06-28 12:56  use correct face index function for wri…  Anders Damsgaard
 (DIR) 2014-06-26 09:17  write cell face velocities to files       Anders Damsgaard
 (DIR) 2014-06-24 20:01  shorten default time step length          Anders Damsgaard
 (DIR) 2014-06-24 15:08  solver does not converge without at lea…  Anders Damsgaard
 (DIR) 2014-06-24 15:08  added fluid-particle interaction test     Anders Damsgaard
 (DIR) 2014-06-24 15:07  fluid-particle interaction verified       Anders Damsgaard
 (DIR) 2014-06-24 14:48  increase standard DEM time step, 100 DE…  Anders Damsgaard
 (DIR) 2014-06-24 14:29  disable time, add fixed particles to en…  Anders Damsgaard
 (DIR) 2014-06-24 12:46  tests designed to check fluid-particle …  Anders Damsgaard
 (DIR) 2014-06-24 12:46  no slip BC on bottom, free slip on top    Anders Damsgaard
 (DIR) 2014-06-24 12:35  implemented Neumann BCs (free slip, no …  Anders Damsgaard
 (DIR) 2014-06-24 10:22  do not fix right and left boundary part…  Anders Damsgaard
 (DIR) 2014-06-23 06:57  time executions by default, normal boun…  Anders Damsgaard
 (DIR) 2014-06-22 20:02  correct wall velocity                     Anders Damsgaard
 (DIR) 2014-06-22 16:20  fix lowermost particles                   Anders Damsgaard
 (DIR) 2014-06-22 09:43  displacements as a vector instead of co…  Anders Damsgaard
 (DIR) 2014-06-22 08:40  vtk module optional                       Anders Damsgaard
 (DIR) 2014-06-22 07:40  keep value as numpy array                 Anders Damsgaard
 (DIR) 2014-06-22 07:39  update self.version after succesful read  Anders Damsgaard
 (DIR) 2014-06-22 07:35  only read Zdisplacement in new version    Anders Damsgaard
 (DIR) 2014-06-22 07:11  write diameter instead of radius to VTK…  Anders Damsgaard
 (DIR) 2014-06-22 07:11  added Zdisplacement component             Anders Damsgaard
 (DIR) 2014-06-22 06:31  compressional strain calculated from wr…  Anders Damsgaard
 (DIR) 2014-06-21 20:07  disable viscosities                       Anders Damsgaard
 (DIR) 2014-06-21 19:27  equal aspec ratio in color cubes          Anders Damsgaard
 (DIR) 2014-06-21 19:13  fix object name                           Anders Damsgaard
 (DIR) 2014-06-21 19:12  don't cleanup before relaxation step      Anders Damsgaard
 (DIR) 2014-06-21 10:55  added checkerboard coloring, disabled r…  Anders Damsgaard
 (DIR) 2014-06-20 20:48  rebuilt documentation                     Anders Damsgaard
 (DIR) 2014-06-20 20:48  small bugfixes in deleteParticle          Anders Damsgaard
 (DIR) 2014-06-20 20:44  add method to delete a single particle    Anders Damsgaard
 (DIR) 2014-06-20 19:40  add explicit call for periodic boundari…  Anders Damsgaard
 (DIR) 2014-06-20 19:34  normal boundaries by default. use perio…  Anders Damsgaard
 (DIR) 2014-06-20 12:02  add more information to dampening funct…  Anders Damsgaard
 (DIR) 2014-06-20 11:53  add methods to set damping and show rat…  Anders Damsgaard
 (DIR) 2014-06-20 11:35  correct simulation lengths, clean up fi…  Anders Damsgaard
 (DIR) 2014-06-20 11:31  reduce simulation time in wall tests      Anders Damsgaard
 (DIR) 2014-06-20 11:28  tangential viscous energy dissipated no…  Anders Damsgaard
 (DIR) 2014-06-20 11:23  correct calls to viscous energy function  Anders Damsgaard
 (DIR) 2014-06-20 11:21  norm of vel_t                             Anders Damsgaard
 (DIR) 2014-06-20 11:21  viscous energy in tangential component …  Anders Damsgaard
 (DIR) 2014-06-20 11:16  frictional model verified                 Anders Damsgaard
 (DIR) 2014-06-20 11:10  added new methods for other energy bala…  Anders Damsgaard
 (DIR) 2014-06-20 10:34  normal-viscous contact model verified     Anders Damsgaard
 (DIR) 2014-06-20 09:46  add separate functions for viscous diss…  Anders Damsgaard
 (DIR) 2014-06-20 09:40  added contact model tests                 Anders Damsgaard
 (DIR) 2014-06-20 09:29  fix function reference                    Anders Damsgaard
 (DIR) 2014-06-20 09:27  new helper functions for energy tracking  Anders Damsgaard
 (DIR) 2014-06-20 08:39  reworked vector norm and momentum funct…  Anders Damsgaard
 (DIR) 2014-06-20 07:49  added test of kinetic energy magnitude,…  Anders Damsgaard
 (DIR) 2014-06-20 07:35  dont use rotational force in normal vel…  Anders Damsgaard
 (DIR) 2014-06-20 07:30  opposite sign on viscous term             Anders Damsgaard
 (DIR) 2014-06-20 07:27  wall normal force changed to avoid attr…  Anders Damsgaard
 (DIR) 2014-06-19 12:58  added dampening                           Anders Damsgaard
 (DIR) 2014-06-19 12:43  typo in timestep formula                  Anders Damsgaard
 (DIR) 2014-06-19 12:42  avoid attraction due to heavy damping     Anders Damsgaard
 (DIR) 2014-06-19 12:41  new time step formula                     Anders Damsgaard
 (DIR) 2014-06-19 09:15  add coloring                              Anders Damsgaard
 (DIR) 2014-06-19 08:43  add color to vtk files                    Anders Damsgaard
 (DIR) 2014-06-19 08:32  perform relaxation without dynamic walls  Anders Damsgaard
 (DIR) 2014-06-19 08:26  added 'color' array for color index       Anders Damsgaard
 (DIR) 2014-06-19 08:22  removed extra paranthesis                 Anders Damsgaard
 (DIR) 2014-06-19 08:20  fixed type                                Anders Damsgaard
 (DIR) 2014-06-19 07:59  normal force >= 0 to avoid attractive f…  Anders Damsgaard
 (DIR) 2014-06-19 07:59  fix dynamic wall position                 Anders Damsgaard
 (DIR) 2014-06-18 14:11  added shortening experiment scripts       Anders Damsgaard
 (DIR) 2014-06-18 10:35  add credits to contributer                Anders Damsgaard
 (DIR) 2014-06-18 10:34  grid index fix                            Anders Damsgaard
 (DIR) 2014-06-18 09:46  enabled 2d behavior if fixvel > 10        Anders Damsgaard
 (DIR) 2014-06-18 09:43  stgarted implementing slab on a slope, …  Anders Damsgaard
 (DIR) 2014-06-18 08:03  don't read div(tau) if inviscid           Anders Damsgaard
 (DIR) 2014-06-18 07:57  merge tests                               Anders Damsgaard
 (DIR) 2014-06-18 07:54  clean up at end                           Anders Damsgaard
 (DIR) 2014-06-18 07:53  added first simple test, removed debug …  Anders Damsgaard
 (DIR) 2014-06-18 07:42  several functions moved outside np>0 co…  Anders Damsgaard
 (DIR) 2014-06-18 07:04  fixed diagnostics                         Anders Damsgaard
 (DIR) 2014-06-18 07:03  more diagnostics upon failure             Anders Damsgaard
 (DIR) 2014-06-18 06:58  corrected grid boundary check, debuggin…  Anders Damsgaard
 (DIR) 2014-06-17 11:46  neumann test passes with set2             Anders Damsgaard
 (DIR) 2014-06-17 11:29  set2, cfd_tests.py passes                 Anders Damsgaard
 (DIR) 2014-06-17 10:58  only read interaction force if np>0. Se…  Anders Damsgaard
 (DIR) 2014-06-17 07:49  ghost node fix underway                   Anders Damsgaard
 (DIR) 2014-06-09 13:23  disable smoothing by default              Anders Damsgaard
 (DIR) 2014-06-09 13:10  cleanup cfd_tests, analysing cfd_tests_…  Anders Damsgaard
 (DIR) 2014-06-09 13:05  cfd_tests results verified                Anders Damsgaard
 (DIR) 2014-06-09 12:59  build type = release                      Anders Damsgaard
 (DIR) 2014-06-09 12:59  no debug output, verifying tests          Anders Damsgaard
 (DIR) 2014-06-09 10:57  set missing ghost nodes for F_pf and di…  Anders Damsgaard
 (DIR) 2014-06-07 09:36  back to cell-center f_pf and F_pf         Anders Damsgaard
 (DIR) 2014-06-06 12:06  renamed interaction force declaration     Anders Damsgaard
 (DIR) 2014-06-06 11:35  rename face array size var                Anders Damsgaard
 (DIR) 2014-06-06 11:31  rename output                             Anders Damsgaard
 (DIR) 2014-06-06 11:30  renamed interaction force on fluid vect…  Anders Damsgaard
 (DIR) 2014-06-06 11:28  debugging, last commit before moving F_…  Anders Damsgaard
 (DIR) 2014-06-05 10:58  report components                         Anders Damsgaard
 (DIR) 2014-06-05 10:51  set ghost nodes for div(tau)              Anders Damsgaard
 (DIR) 2014-06-05 10:15  first corrections for velocity ghost no…  Anders Damsgaard
 (DIR) 2014-06-05 07:47  small fix                                 Anders Damsgaard
 (DIR) 2014-06-05 07:40  non-verbose                               Anders Damsgaard
 (DIR) 2014-06-05 07:39  use amean function instead of manual ca…  Anders Damsgaard
 (DIR) 2014-06-05 07:32  set v_p components to sensible values i…  Anders Damsgaard
 (DIR) 2014-06-05 06:39  fixed segfault tau due to missing alloc…  Anders Damsgaard
 (DIR) 2014-06-05 06:19  verified div(tau) and interaction force…  Anders Damsgaard
 (DIR) 2014-06-05 05:40  set pressure ghost nodes before used to…  Anders Damsgaard
 (DIR) 2014-06-05 05:31  investigating segfaultm small fixes       Anders Damsgaard
 (DIR) 2014-06-03 14:57  removed face node pointers from host      Anders Damsgaard
 (DIR) 2014-06-03 14:56  removed face node allocation and deallo…  Anders Damsgaard
 (DIR) 2014-06-03 14:52  added ghost nodes to vidx                 Anders Damsgaard
 (DIR) 2014-06-03 14:45  increase size of staggered grid array a…  Anders Damsgaard
 (DIR) 2014-06-03 14:27  fix typos, the code compiles without er…  Anders Damsgaard
 (DIR) 2014-06-03 14:25  fix function and variable type            Anders Damsgaard
 (DIR) 2014-06-03 14:24  fix indicies                              Anders Damsgaard
 (DIR) 2014-06-03 14:21  fix arguments                             Anders Damsgaard
 (DIR) 2014-06-03 14:18  possibly final staggered grid correctio…  Anders Damsgaard
 (DIR) 2014-06-03 10:39  corrected face/center indexing            Anders Damsgaard
 (DIR) 2014-06-03 10:35  split corrector step into two             Anders Damsgaard
 (DIR) 2014-06-03 09:05  reformulated divergence() and forcing f…  Anders Damsgaard
 (DIR) 2014-06-03 09:01  reenable div_phi_vi_v                     Anders Damsgaard
 (DIR) 2014-06-03 09:00  wrong gradient                            Anders Damsgaard
 (DIR) 2014-06-03 08:59  last changes to velocity prediction fun…  Anders Damsgaard
 (DIR) 2014-06-03 08:51  implemented staggered grid in several f…  Anders Damsgaard
 (DIR) 2014-05-27 06:38  added cell_centered option to writeVTKa…  Anders Damsgaard
 (DIR) 2014-05-26 07:02  New cfd-dem implementation                Anders Damsgaard
 (DIR) 2014-05-23 12:35  set2 as default                           Anders Damsgaard
 (DIR) 2014-05-23 11:46  decreased convergence log interval, tes…  Anders Damsgaard
 (DIR) 2014-05-23 11:34  remove debug output from interaction fo…  Anders Damsgaard
 (DIR) 2014-05-23 11:31  remove const keyword                      Anders Damsgaard
 (DIR) 2014-05-23 11:30  avoid chi=-nan                            Anders Damsgaard
 (DIR) 2014-05-23 11:15  fixed io test fluid                       Anders Damsgaard
 (DIR) 2014-05-23 10:50  avoid nan/inf values when |v_rel| = 0     Anders Damsgaard
 (DIR) 2014-05-23 10:42  div(tau) will give wrong values on firs…  Anders Damsgaard
 (DIR) 2014-05-23 09:18  added information to maxNormResNS nan t…  Anders Damsgaard
 (DIR) 2014-05-23 09:11  enabled debugging, small error in printf  Anders Damsgaard
 (DIR) 2014-05-23 09:06  changed debug flag type                   Anders Damsgaard
 (DIR) 2014-05-23 09:01  fixed v_p debug output                    Anders Damsgaard
 (DIR) 2014-05-23 08:50  added finite checks to interaction forc…  Anders Damsgaard
 (DIR) 2014-05-23 08:46  wrong unit in pressure prediction         Anders Damsgaard
 (DIR) 2014-05-23 08:42  implementation from zhou et al 2010, un…  Anders Damsgaard
 (DIR) 2014-05-20 08:06  finished model A+B implementation, unte…  Anders Damsgaard
 (DIR) 2014-05-20 07:59  Option to switch between dem-cfd model …  Anders Damsgaard
 (DIR) 2014-05-12 07:56  fix free call placement                   Anders Damsgaard
 (DIR) 2014-05-12 07:49  show status messages in alphabetical or…  Anders Damsgaard
 (DIR) 2014-05-09 09:01  updated documentation                     Anders Damsgaard
 (DIR) 2014-05-09 08:38  cleanup after tests                       Anders Damsgaard
 (DIR) 2014-05-09 08:37  small format change                       Anders Damsgaard
 (DIR) 2014-05-09 08:27  increase space for two digit timer        Anders Damsgaard
 (DIR) 2014-05-09 07:50  increased readability on list output      Anders Damsgaard
 (DIR) 2014-05-08 09:05  enable fluid flow                         Anders Damsgaard
 (DIR) 2014-05-08 08:57  improved help                             Anders Damsgaard
 (DIR) 2014-05-08 08:55  improved help message, added list option  Anders Damsgaard
 (DIR) 2014-05-08 08:41  simulation list shows shorthand status    Anders Damsgaard
 (DIR) 2014-05-08 08:33  added simulation listing if sphere_stat…  Anders Damsgaard
 (DIR) 2014-05-08 08:05  added help message                        Anders Damsgaard
 (DIR) 2014-05-08 07:37  disabled upwind differences, reworked s…  Anders Damsgaard
 (DIR) 2014-05-07 14:23  add comment on "cell data to point data…  Anders Damsgaard
 (DIR) 2014-05-07 14:17  visualize cell values at cell centers b…  Anders Damsgaard
 (DIR) 2014-05-07 08:06  incrementally update current time         Anders Damsgaard
 (DIR) 2014-05-07 08:03  check CFL criteria in every fluid updat…  Anders Damsgaard
 (DIR) 2014-05-06 11:44  fixed minor error in forcing function, …  Anders Damsgaard
 (DIR) 2014-05-02 11:14  testing pressure gradient force           Anders Damsgaard
 (DIR) 2014-05-02 07:55  added fluid BC methods, testing stokes_…  Anders Damsgaard
 (DIR) 2014-05-01 17:11  add subscripts to timer                   Anders Damsgaard
 (DIR) 2014-05-01 10:44  Added simple particle-fluid test          Anders Damsgaard
 (DIR) 2014-05-01 10:21  minor column width fix                    Anders Damsgaard
 (DIR) 2014-05-01 09:06  build type = release                      Anders Damsgaard
 (DIR) 2014-05-01 08:51  implemented ndem parameter for DEM/CFD …  Anders Damsgaard
 (DIR) 2014-04-30 10:01  verified findDistMod changes              Anders Damsgaard
 (DIR) 2014-04-30 09:47  fixed findDistMod function to allow sea…  Anders Damsgaard
 (DIR) 2014-04-30 06:47  added ndem parameter, debugging fluid t…  Anders Damsgaard
 (DIR) 2014-04-28 12:03  back to using findPorositiesVelocitiesD…  Anders Damsgaard
 (DIR) 2014-04-25 07:07  testing new porosity method, set fluid=…  Anders Damsgaard
 (DIR) 2014-04-24 11:40  added function for porosity gradient es…  Anders Damsgaard
 (DIR) 2014-04-24 08:14  begun implementation of porosity gradie…  Anders Damsgaard
 (DIR) 2014-04-23 13:41  uncommented upward differences            Anders Damsgaard
 (DIR) 2014-04-23 08:14  fluid cell sphere diameter = cell width   Anders Damsgaard
 (DIR) 2014-04-23 07:55  Removed gradient overloading as nvcc do…  Anders Damsgaard
 (DIR) 2014-04-22 13:33  corrected error in forcing function and…  Anders Damsgaard
 (DIR) 2014-04-22 10:53  reenabled term with dphi                  Anders Damsgaard
 (DIR) 2014-04-22 09:09  renamed flag                              Anders Damsgaard
 (DIR) 2014-04-22 09:08  add CFDDEMCOUPLING flag                   Anders Damsgaard
 (DIR) 2014-04-22 08:58  removed phi test                          Anders Damsgaard
 (DIR) 2014-04-22 07:36  Merge branch 'master' of github.com:and…  Anders Damsgaard
 (DIR) 2014-04-22 07:35  removed extra components from checkFini…  Anders Damsgaard
 (DIR) 2014-04-04 11:43  Small correction to fluid-particle coup…  Anders Damsgaard
 (DIR) 2014-04-03 12:26  Added dx exception                        Anders Damsgaard
 (DIR) 2014-04-03 11:05  function overloading doesnt seem to wor…  Anders Damsgaard
 (DIR) 2014-04-03 10:30  Disable other plots                       Anders Damsgaard
 (DIR) 2014-04-03 10:29  Do not generate diffusion/advection plo…  Anders Damsgaard
 (DIR) 2014-04-03 08:58  updated documentation to correct intera…  Anders Damsgaard
 (DIR) 2014-04-03 08:47  Corrected interaction force in velocity…  Anders Damsgaard
 (DIR) 2014-04-03 07:40  Gravitational drag on fluid corrected     Anders Damsgaard
 (DIR) 2014-04-02 13:58  sign error in fixvel evaluation, still …  Anders Damsgaard
 (DIR) 2014-04-02 13:29  added deleteAllParticles method, debugg…  Anders Damsgaard
 (DIR) 2014-04-02 07:41  redundant line break                      Anders Damsgaard
 (DIR) 2014-04-02 07:18  updated documentation                     Anders Damsgaard
 (DIR) 2014-04-02 07:17  Added option to fix particle horizontal…  Anders Damsgaard
 (DIR) 2014-04-01 11:39  Removed porosity forcing at iteration=20  Anders Damsgaard
 (DIR) 2014-04-01 10:57  added more checkFinite tests              Anders Damsgaard
 (DIR) 2014-04-01 10:49  Added tests to check if values in kerne…  Anders Damsgaard
 (DIR) 2014-04-01 07:21  Added fluid shear test                    Anders Damsgaard
 (DIR) 2014-03-31 11:39  Added error handling if visualization m…  Anders Damsgaard
 (DIR) 2014-03-31 11:30  fix typo                                  Anders Damsgaard
 (DIR) 2014-03-31 11:29  dilation in mean grain diameters as def…  Anders Damsgaard
 (DIR) 2014-03-31 11:27  dilation in percent as default            Anders Damsgaard
 (DIR) 2014-03-31 11:23  disable adjustUpperWall call in shear s…  Anders Damsgaard
 (DIR) 2014-03-31 10:37  added syncthreads                         Anders Damsgaard
 (DIR) 2014-03-31 10:36  Add stress BC to top wall in shear func…  Anders Damsgaard
 (DIR) 2014-03-31 09:10  Change shear plot subplot layout          Anders Damsgaard
 (DIR) 2014-03-31 09:05  call adjustUpperWall in shear function    Anders Damsgaard
 (DIR) 2014-03-31 09:00  wall thickness should depend on particl…  Anders Damsgaard
 (DIR) 2014-03-31 08:45  new wall mass function                    Anders Damsgaard
 (DIR) 2014-03-31 07:13  Make sure nw=1 when doing a shear test    Anders Damsgaard
 (DIR) 2014-03-27 12:27  revised hydrostatic pressure distributi…  Anders Damsgaard
 (DIR) 2014-03-27 12:12  Added functionality to initialize fluid…  Anders Damsgaard
 (DIR) 2014-03-27 08:07  visualize function moved to sim class     Anders Damsgaard
 (DIR) 2014-03-26 15:06  Set all fluid parameters in initFluid     Anders Damsgaard
 (DIR) 2014-03-26 15:01  fix typo                                  Anders Damsgaard
 (DIR) 2014-03-26 11:53  allow initFluid on object that initiall…  Anders Damsgaard
 (DIR) 2014-03-26 10:28  Added cross references to solver parame…  Anders Damsgaard
 (DIR) 2014-03-26 09:30  Periodic XY boundaries default in both …  Anders Damsgaard
 (DIR) 2014-03-26 09:30  Periodic lateral boundaries as default    Anders Damsgaard
 (DIR) 2014-03-26 08:47  Second test shows strange behavior star…  Anders Damsgaard
 (DIR) 2014-03-25 14:34  Longer test, changed parameter setting    Anders Damsgaard
 (DIR) 2014-03-25 13:55  Deleted old header file with solver par…  Anders Damsgaard
 (DIR) 2014-03-25 13:35  Merge pull request #6 from anders-dc/ns…  Anders Damsgaard
 (DIR) 2014-03-25 13:22  readme update for merge                   Anders Damsgaard
 (DIR) 2014-03-25 13:17  Merge pull request #5 from anders-dc/ns…  Anders Damsgaard
 (DIR) 2013-10-30 08:13  added document explaining Darcy impleme…  Anders Damsgaard
 (DIR) 2013-10-30 08:12  small changes in scripts                  Anders Damsgaard
 (DIR) 2013-10-29 13:18  darcy flow working                        Anders Damsgaard
 (DIR) 2013-10-29 13:18  hydraulic conductivity added to IO        Anders Damsgaard
 (DIR) 2013-10-28 08:39  removed irrelevant failing bond test      Anders Damsgaard
 (DIR) 2013-10-22 13:20  Added paraview req., fixed collision.py   Anders Damsgaard
 (DIR) 2013-10-22 13:14  added python-vtk requirement              Anders Damsgaard
 (DIR) 2013-10-22 13:11  fixed fluid node offset                   Anders Damsgaard
 (DIR) 2013-10-22 13:06  python-vtk module required, can write f…  Anders Damsgaard
 (DIR) 2013-10-22 11:38  moved darcy arrays into Darcy structure   Anders Damsgaard
 (DIR) 2013-10-22 08:10  the idx function should be inline         Anders Damsgaard
 (DIR) 2013-10-22 07:54  different comment style                   Anders Damsgaard
 (DIR) 2013-10-22 07:18  fatal error in cudaFree calls             Anders Damsgaard
 (DIR) 2013-10-21 12:38  added forgotten cudaFree calls to darcy…  Anders Damsgaard
 (DIR) 2013-10-21 10:54  added line counting script                Anders Damsgaard
 (DIR) 2013-10-21 10:54  darcy values should only be written if …  Anders Damsgaard
 (DIR) 2013-10-21 09:23  added writeVTKall function                Anders Damsgaard
 (DIR) 2013-10-18 12:46  writeVTK implemented and verified         Anders Damsgaard
 (DIR) 2013-10-16 08:50  numerous changes, added sphere based po…  Anders Damsgaard
 (DIR) 2013-10-11 09:20  tight_layout call fixes energy plot lab…  Anders Damsgaard
 (DIR) 2013-10-11 09:00  added example of granular collapse        Anders Damsgaard
 (DIR) 2013-10-09 12:38  first tests with Darcy kernels OK, inpu…  Anders Damsgaard
 (DIR) 2013-10-09 11:47  removed status message from transferDar…  Anders Damsgaard
 (DIR) 2013-10-09 11:43  Darcy kernels disabled, IO verified       Anders Damsgaard
 (DIR) 2013-10-09 11:43  changed title                             Anders Damsgaard
 (DIR) 2013-10-09 11:16  added return statement to test outcome    Anders Damsgaard
 (DIR) 2013-10-09 11:13  Added fluid IO test                       Anders Damsgaard
 (DIR) 2013-10-09 10:16  fixed profiler output                     Anders Damsgaard
 (DIR) 2013-10-09 09:22  forgot to set ghost nodes on device       Anders Damsgaard
 (DIR) 2013-10-09 09:11  ported Darcy routines to CUDA, compiles…  Anders Damsgaard
 (DIR) 2013-10-09 09:10  fixed fatal bug in how threads return i…  Anders Damsgaard
 (DIR) 2013-10-04 12:40  changed order of NVCC flags               Anders Damsgaard
 (DIR) 2013-10-03 12:02  Code is now compiled for either FERMI o…  Anders Damsgaard
 (DIR) 2013-10-02 09:59  fixed error in addParticle                Anders Damsgaard
 (DIR) 2013-10-01 17:33  added readstep and addParticle            Anders Damsgaard
 (DIR) 2013-09-28 08:17  updated examples                          Anders Damsgaard
 (DIR) 2013-09-28 08:16  updated examples                          Anders Damsgaard
 (DIR) 2013-09-28 07:25  fixed particle zone thickness now deter…  Anders Damsgaard
 (DIR) 2013-09-12 09:32  Added some comments, nice indentation     Anders Damsgaard
 (DIR) 2013-09-12 09:10  d_K wasnt set, now working, periodic bo…  Anders Damsgaard
 (DIR) 2013-09-10 13:59  Fixed error in CUDA version               Anders Damsgaard
 (DIR) 2013-08-27 11:59  fixed bug in adjustUpperWall              Anders Damsgaard
 (DIR) 2013-08-27 08:21  added initialization to uniaxial.py       Anders Damsgaard
 (DIR) 2013-08-27 08:18  added initialization to uniaxial.py       Anders Damsgaard
 (DIR) 2013-08-26 10:48  small fixes in triaxial visualization     Anders Damsgaard
 (DIR) 2013-08-22 13:16  updated time view to include total time   Anders Damsgaard
 (DIR) 2013-08-22 12:41  added triaxial visualization method       Anders Damsgaard
 (DIR) 2013-08-22 11:04  updated triaxial script                   Anders Damsgaard
 (DIR) 2013-08-22 11:02  updated triaxial script                   Anders Damsgaard
 (DIR) 2013-08-22 07:45  fixed output display                      Anders Damsgaard
 (DIR) 2013-08-22 07:37  Increased stdout status period            Anders Damsgaard
 (DIR) 2013-08-22 07:37  Some triaxial bugfixes                    Anders Damsgaard
 (DIR) 2013-08-22 07:34  Some triaxial bugfixes                    Anders Damsgaard
 (DIR) 2013-08-21 13:37  sphere now only reports to stdout at a …  Anders Damsgaard
 (DIR) 2013-08-21 12:47  added triaxial and uniaxial example scr…  Anders Damsgaard
 (DIR) 2013-08-21 12:46  added triaxial simulation possibilities   Anders Damsgaard
 (DIR) 2013-08-16 09:22  general updates                           Anders Damsgaard
 (DIR) 2013-08-16 09:21  added a couple of permeability refs;      Anders Damsgaard
 (DIR) 2013-07-04 19:40  Added sphere python module to tests dir   Anders Damsgaard
 (DIR) 2013-06-29 10:11  Darcy porous flow (CPU) implemented, aw…  Anders Damsgaard
 (DIR) 2013-06-24 13:51  Renamed cell storativity to cell specif…  Anders Damsgaard
 (DIR) 2013-06-13 10:45  file write criteria changed               Anders Damsgaard
 (DIR) 2013-06-12 10:37  utility functions split into header and…  Anders Damsgaard
 (DIR) 2013-06-12 10:29  Moved CPU utility functions to separate…  Anders Damsgaard
 (DIR) 2013-06-06 11:24  more work on FD Darcy                     Anders Damsgaard
 (DIR) 2013-06-05 10:02  Darcy flow seems correct, needs test ag…  Anders Damsgaard
 (DIR) 2013-06-03 13:32  Better integration of darcy flow into s…  Anders Damsgaard
 (DIR) 2013-06-03 13:07  Added darcyflow parameter to init         Anders Damsgaard
 (DIR) 2013-06-03 08:57  Working on implementing darcy flow        Anders Damsgaard
 (DIR) 2013-05-28 11:11  Fluid grid values are only read/written…  Anders Damsgaard
 (DIR) 2013-05-28 08:22  Renamed darcy flow main file to porousf…  Anders Damsgaard
 (DIR) 2013-05-28 08:07  Started darcy flow implementation         Anders Damsgaard
 (DIR) 2013-05-24 08:34  fixed error in shear visualization figu…  Anders Damsgaard
 (DIR) 2013-05-24 08:32  fixed indentation error                   Anders Damsgaard
 (DIR) 2013-05-22 11:16  Added video function to sphere class      Anders Damsgaard
 (DIR) 2013-05-21 11:47  Added darcy main file                     Anders Damsgaard C…
 (DIR) 2013-05-02 08:36  Fluid simulation only happens if period…  Anders Damsgaard
 (DIR) 2013-05-02 07:58  Fixed threadsPerBlock value               Anders Damsgaard
 (DIR) 2013-05-01 15:07  Added LBM fluid simulation, values off    Anders Damsgaard
 (DIR) 2013-05-01 14:06  changed to 3d thread layout               Anders Damsgaard
 (DIR) 2013-04-29 12:13  First LB implementation                   Anders Damsgaard
 (DIR) 2013-04-11 08:29  Sphere unsuccessfull return status chan…  Anders Damsgaard
 (DIR) 2013-04-08 08:44  Added porosity plot function              Anders Damsgaard
 (DIR) 2013-04-07 03:16  sheardisp working                         Anders Damsgaard C…
 (DIR) 2013-04-07 02:38  added labels                              Anders Damsgaard C…
 (DIR) 2013-04-07 02:27  added sheardisp visualization             Anders Damsgaard C…
 (DIR) 2013-04-07 01:38  merge                                     Anders Damsgaard C…
 (DIR) 2013-04-06 19:32  tabs-spaces                               Anders Damsgaard C…
 (DIR) 2013-04-03 10:04  cleaned up sphere.py                      Anders Damsgaard C…
 (DIR) 2013-03-17 20:43  Changed return value under dry run        Anders Damsgaard
 (DIR) 2013-03-17 20:40  Removed bond no. reporting                Anders Damsgaard
 (DIR) 2013-03-17 20:25  Merge branch 'varN' Sinusoidal modulati…  Anders Damsgaard
 (DIR) 2013-03-17 20:22  small fixes                               Anders Damsgaard
 (DIR) 2013-03-14 21:48  Added details concerning helper_math.h …  Anders Damsgaard
 (DIR) 2013-03-14 18:25  Added more torque-script generating fun…  Anders Damsgaard
 (DIR) 2013-03-14 05:03  Removed ref. by string from cameraInit    Anders Damsgaard
 (DIR) 2013-03-14 04:39  Added torqueScript3 for running three c…  Anders Damsgaard
 (DIR) 2013-03-14 04:25  Added torqueScript generating function    Anders Damsgaard
 (DIR) 2013-03-13 23:00  Default build type: Release               Anders Damsgaard
 (DIR) 2013-03-13 22:58  Threads per block limited to 256          Anders Damsgaard
 (DIR) 2013-03-13 22:42  Constant memory vars referenced directl…  Anders Damsgaard
 (DIR) 2013-03-13 21:56  added bold typeface to update             Anders Damsgaard
 (DIR) 2013-03-13 21:53  Updated to CUDA 5.0                       Anders Damsgaard
 (DIR) 2013-03-13 04:45  added circle marks for particles in ts …  Anders Damsgaard
 (DIR) 2013-03-12 21:10  Added legacy read mode for old data fil…  Anders Damsgaard
 (DIR) 2013-03-12 21:09  Added legacy read mode for old data fil…  Anders Damsgaard
 (DIR) 2013-03-12 21:07  Particles spinning in pos. y direction …  Anders Damsgaard
 (DIR) 2013-03-12 20:12  Added bond breaking                       Anders Damsgaard
 (DIR) 2013-03-12 20:12  Corrected range error in random number …  Anders Damsgaard
 (DIR) 2013-03-12 18:43  changed to numpy.minimum in E_bond_pot …  Anders Damsgaard
 (DIR) 2013-03-12 05:09  Added bondsRose, visualizing strike and…  Anders Damsgaard
 (DIR) 2013-03-12 04:53  added forcechainsRose visualization met…  Anders Damsgaard
 (DIR) 2013-03-12 04:30  added forcechain vis. method (untested)…  Anders Damsgaard
 (DIR) 2013-03-11 22:34  fixed nb0 value error                     Anders Damsgaard
 (DIR) 2013-03-11 22:17  created cond2linear, a function that bo…  Anders Damsgaard
 (DIR) 2013-03-11 21:01  modified createBondPair description       Anders Damsgaard C…
 (DIR) 2013-03-11 20:54  bonds working, tests passed               Anders Damsgaard
 (DIR) 2013-03-07 17:36  added potential energy stored in bonds    Anders Damsgaard
 (DIR) 2013-03-07 17:36  Bond model passes stability, normal, sh…  Anders Damsgaard
 (DIR) 2013-02-23 20:09  Added parallel bonds, still untested      Anders Damsgaard
 (DIR) 2013-02-22 20:46  Added valgrind and cuda-memcheck tests …  Anders Damsgaard
 (DIR) 2013-02-22 20:45  Removed x flag                            Anders Damsgaard
 (DIR) 2013-02-01 16:18  Merge branch 'master' of https://github…  Anders Damsgaard
 (DIR) 2013-02-01 16:16  removed value check when calculating po…  Anders Damsgaard
 (DIR) 2013-01-26 11:17  tried to fix doc hyperlinks               Anders Damsgaard
 (DIR) 2013-01-26 11:16  removed tmp pdflatex files                Anders Damsgaard
 (DIR) 2013-01-26 11:13  Added links to doc builds                 Anders Damsgaard
 (DIR) 2013-01-26 11:11  Merge branch 'master' of https://github…  Anders Damsgaard
 (DIR) 2013-01-26 11:10  Documentation now available in pdf form…  Anders Damsgaard
 (DIR) 2013-01-26 11:02  changed build path for latexpdf, change…  Anders Damsgaard
 (DIR) 2013-01-25 14:32  bonds implemented                         Anders Damsgaard
 (DIR) 2013-01-25 14:23  added sphere.py symlink                   Anders Damsgaard
 (DIR) 2013-01-25 14:21  Tests incorporated with CMake             Anders Damsgaard
 (DIR) 2013-01-24 14:55  Only a single spherebin is passed to th…  Anders Damsgaard
 (DIR) 2013-01-24 13:07  Const. mem should not be transfered aft…  Anders Damsgaard
 (DIR) 2013-01-24 10:16  fixed bug in class render function        Anders Damsgaard
 (DIR) 2013-01-15 10:48  Force chain visualization implemented     Anders Damsgaard
 (DIR) 2013-01-14 15:09  force chain output working                Anders Damsgaard
 (DIR) 2013-01-14 12:09  fixed alloc error                         Anders Damsgaard
 (DIR) 2013-01-14 12:01  corrected error in forcechains()          Anders Damsgaard
 (DIR) 2013-01-14 11:49  Method flag chooses rendering implicitly  Anders Damsgaard
 (DIR) 2013-01-14 11:47  Implemented simple force chain visualiz…  Anders Damsgaard
 (DIR) 2013-01-14 09:40  Changed dilation unit in shear visualiz…  Anders Damsgaard
 (DIR) 2013-01-11 08:24  Thin section video function added         Anders Damsgaard
 (DIR) 2013-01-10 12:01  Added thin-section visualization method   Anders Damsgaard
 (DIR) 2013-01-09 15:05  Changed dilation output format            Anders Damsgaard
 (DIR) 2013-01-04 12:14  added optional lower cutoff for particl…  Anders Damsgaard
 (DIR) 2013-01-02 11:57  changed fig text precision                Anders Damsgaard
 (DIR) 2013-01-02 11:51  changed fig text precision                Anders Damsgaard
 (DIR) 2013-01-02 11:43  moved tau_u text                          Anders Damsgaard
 (DIR) 2013-01-02 11:42  moved tau_u text                          Anders Damsgaard
 (DIR) 2013-01-02 11:33  bugfix in fig title                       Anders Damsgaard
 (DIR) 2013-01-02 11:23  Added tau_u annotation to shear visuali…  Anders Damsgaard
 (DIR) 2013-01-02 08:57  Fixed porosity calculator and added por…  Anders Damsgaard
 (DIR) 2012-12-27 10:57  Changed format of txt output values in …  Anders Damsgaard
 (DIR) 2012-12-26 12:49  Fixed txt shear output                    Anders Damsgaard
 (DIR) 2012-12-19 12:45  CUDA set as required in cmake             Anders Damsgaard
 (DIR) 2012-12-19 12:32  Build type now set in root CMakeLists.t…  Anders Damsgaard
 (DIR) 2012-12-19 10:53  Shear-test also initializes and consoli…  Anders Damsgaard
 (DIR) 2012-12-19 10:52  Added shear-test                          Anders Damsgaard
 (DIR) 2012-12-19 10:46  x-axis in shear visualization now shear…  Anders Damsgaard
 (DIR) 2012-12-19 10:17  notes on behaviour if SDK is not found …  Anders Damsgaard
 (DIR) 2012-12-19 10:14  Renamed commands calling sphere to shor…  Anders Damsgaard
 (DIR) 2012-12-19 10:10  Minor markup changes                      Anders Damsgaard
 (DIR) 2012-12-19 10:10  Changed eye pos                           Anders Damsgaard
 (DIR) 2012-12-19 10:10  Removed manual Makefile                   Anders Damsgaard
 (DIR) 2012-12-19 10:02  Added INSTALL.sh for linux                Anders Damsgaard
 (DIR) 2012-12-19 10:01  CMake now used as the build system        Anders Damsgaard
 (DIR) 2012-12-18 12:58  Removed legacy raytracer folder, moved …  Anders Damsgaard
 (DIR) 2012-12-18 12:15  Removed header from porosity output       Anders Damsgaard
 (DIR) 2012-12-18 12:15  Fixed linarr memtransfer error            Anders Damsgaard
 (DIR) 2012-12-18 09:39  Porosities are now written to stdout, n…  Anders Damsgaard
 (DIR) 2012-12-17 19:17  Added empty boost unit test               Anders Damsgaard C…
 (DIR) 2012-12-17 14:47  porosity function seems to work           Anders Damsgaard
 (DIR) 2012-12-17 14:17  porosity function seems to work           Anders Damsgaard
 (DIR) 2012-12-17 12:52  Renamed torqueScript email parameters     Anders Damsgaard
 (DIR) 2012-12-17 12:51  Renamed torqueScript email parameters     Anders Damsgaard
 (DIR) 2012-12-13 21:41  Unfinished torqueScript function added    Anders Damsgaard C…
 (DIR) 2012-12-13 09:51  Removed exceptions as dinosaur python d…  Anders Damsgaard
 (DIR) 2012-12-11 08:38  Removed bug that caused unspec. launch …  Anders Damsgaard
 (DIR) 2012-12-06 21:08  documentation build folder now build, s…  Anders Damsgaard C…
 (DIR) 2012-12-06 20:41  porosity main added                       Anders Damsgaard
 (DIR) 2012-12-06 20:39  doc contains sphere output, porosity im…  Anders Damsgaard
 (DIR) 2012-12-06 07:09  Introduction finished                     Anders Damsgaard C…
 (DIR) 2012-12-05 21:42  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-05 21:41  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-05 14:05  Legend in shear visualization stress pl…  Anders Damsgaard
 (DIR) 2012-12-05 13:52  Dilation in shear vis. now in percent     Anders Damsgaard
 (DIR) 2012-12-05 12:20  C++ reference moved into sphere interna…  Anders Damsgaard
 (DIR) 2012-12-05 12:13  Further subdivided docs into separate f…  Anders Damsgaard
 (DIR) 2012-12-05 08:03  Introduction partially reformatted        Anders Damsgaard C…
 (DIR) 2012-12-04 21:12  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:11  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:10  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:09  updated readme                            Anders Damsgaard C…
 (DIR) 2012-12-04 21:06  Added input folder auto generation        Anders Damsgaard C…
 (DIR) 2012-12-04 21:05  Removed elastic-debug folder and conten…  Anders Damsgaard C…
 (DIR) 2012-12-04 20:59  Further work on converting latex doc to…  Anders Damsgaard C…
 (DIR) 2012-12-04 19:48  Added separate rst files for python api…  Anders Damsgaard C…
 (DIR) 2012-12-04 19:38  Removed doxygen HTML output               Anders Damsgaard C…
 (DIR) 2012-12-04 19:11  Fixed relative path, added Makefile       Anders Damsgaard C…
 (DIR) 2012-12-04 19:09  Doxygen conf file added                   Anders Damsgaard
 (DIR) 2012-12-04 18:44  Fixed stray tab chars and python3 print…  Anders Damsgaard C…
 (DIR) 2012-12-04 13:28  Added cudaCHooseDevice                    Anders Damsgaard
 (DIR) 2012-12-04 12:33  added error message if undefined visual…  Anders Damsgaard
 (DIR) 2012-12-04 12:17  added shebang                             Anders Damsgaard
 (DIR) 2012-12-04 10:32  Removed path to 32 bit libs               Anders Damsgaard
 (DIR) 2012-12-04 08:49  Removed newline                           Anders Damsgaard
 (DIR) 2012-12-03 15:12  Removed bug - dev_wforce_pp should alwa…  Anders Damsgaard
 (DIR) 2012-12-03 08:46  Header file dependencies split into C a…  Anders Damsgaard
 (DIR) 2012-11-30 20:59  Added sphinx documentation, still to be…  Anders Damsgaard
 (DIR) 2012-11-29 21:12  Added missing math mode end symbol        Anders Damsgaard
 (DIR) 2012-11-29 21:11  Added legend to shear stress in visuali…  Anders Damsgaard
 (DIR) 2012-11-29 21:10  Added legend to shear stress in visuali…  Anders Damsgaard
 (DIR) 2012-11-29 20:17  reconfigured shear() to not touch upper…  Anders Damsgaard
 (DIR) 2012-11-29 17:33  video() adapted to new file name format   Anders Damsgaard
 (DIR) 2012-11-29 10:35  Changed multiline comment symbol          Anders Damsgaard
 (DIR) 2012-11-29 10:16  Added grid lines to all visualization p…  Anders Damsgaard
 (DIR) 2012-11-29 10:13  log dev stress vs void ratio plot added…  Anders Damsgaard
 (DIR) 2012-11-29 09:43  Added missing +                           Anders Damsgaard
 (DIR) 2012-11-29 09:42  non-menber render function now includes…  Anders Damsgaard
 (DIR) 2012-11-29 09:31  Added effective and prescribed stress v…  Anders Damsgaard
 (DIR) 2012-11-29 09:29  Fixed wall velocity error                 Anders Damsgaard
 (DIR) 2012-11-29 09:00  Added half-step leapfrog Verlet integra…  Anders Damsgaard
 (DIR) 2012-11-28 14:12  when rendering, dont check values         Anders Damsgaard
 (DIR) 2012-11-28 13:57  Added plot of effective and defined str…  Anders Damsgaard
 (DIR) 2012-11-28 13:37  Fixed indentation                         Anders Damsgaard
 (DIR) 2012-11-28 13:28  Cleaned up, and reformatted comments      Anders Damsgaard
 (DIR) 2012-11-28 13:05  Auto-indented all source files, added m…  Anders Damsgaard
 (DIR) 2012-11-28 12:41  Various wforce changes                    Anders Damsgaard
 (DIR) 2012-11-28 12:36  Fixed typo                                Anders Damsgaard
 (DIR) 2012-11-28 12:34  Added self to member function calls       Anders Damsgaard
 (DIR) 2012-11-28 09:07  Moved general upper wall routines into …  Anders Damsgaard
 (DIR) 2012-11-27 13:46  Fixed indentation error in visualize      Anders Damsgaard
 (DIR) 2012-11-27 13:46  Fixed indentation error in visualize      Anders Damsgaard
 (DIR) 2012-11-27 13:27  tests updated                             Anders Damsgaard
 (DIR) 2012-11-27 13:23  Removed cuPrintf.cuh                      Anders Damsgaard
 (DIR) 2012-11-27 12:46  Removed report of wall values             Anders Damsgaard
 (DIR) 2012-11-27 12:46  Changed write format of wmode             Anders Damsgaard
 (DIR) 2012-11-27 12:45  Bugfix-related changes                    Anders Damsgaard
 (DIR) 2012-11-27 12:44  Corrected critical read bug               Anders Damsgaard
 (DIR) 2012-11-27 11:50  Changed input arguments                   Anders Damsgaard
 (DIR) 2012-11-27 11:49  Added mu_ws and mu_wd zeroing in shear()  Anders Damsgaard
 (DIR) 2012-11-27 07:50  Updated wall integration scheme           Anders Damsgaard
 (DIR) 2012-11-22 13:25  contactLinear improved. Not enough ener…  Anders Damsgaard
 (DIR) 2012-11-22 11:26  fixed indentation error for visualize()   Anders Damsgaard
 (DIR) 2012-11-22 09:46  changed display environment               Anders Damsgaard
 (DIR) 2012-11-22 09:43  Removed cuPrintf.cu                       Anders Damsgaard
 (DIR) 2012-11-22 09:39  further benchmarking of contact model 1   Anders Damsgaard
 (DIR) 2012-11-19 15:20  Fixed critical bug in integration schem…  Anders Damsgaard
 (DIR) 2012-11-19 08:16  defaultParams now uses mu values instea…  Anders Damsgaard
 (DIR) 2012-11-19 08:09  defaultParams now uses mu values instea…  Anders Damsgaard
 (DIR) 2012-11-14 13:15  Raytracer only calls cudaFree(linarr) w…  Anders Damsgaard
 (DIR) 2012-11-14 11:49  Changed tests to new digit format of bi…  Anders Damsgaard
 (DIR) 2012-11-14 09:21  Made time step more conservative, valid…  Anders Damsgaard
 (DIR) 2012-11-13 19:36  Half-step leapfrog Verlet integration s…  Anders Damsgaard C…
 (DIR) 2012-11-13 15:04  Currently experimenting with integratio…  Anders Damsgaard
 (DIR) 2012-11-09 21:16  Added memtransfer and error checks        Anders Damsgaard C…
 (DIR) 2012-11-09 21:09  Added cudaMemcpy for linarr, fixed synt…  Anders Damsgaard C…
 (DIR) 2012-11-09 21:03  Changed type of linarr. Linarr still ne…  Anders Damsgaard C…
 (DIR) 2012-11-09 21:01  More color visualization methods added.   Anders Damsgaard C…
 (DIR) 2012-11-09 20:26  img_out and output folders are now made…  Anders Damsgaard C…
 (DIR) 2012-11-09 20:23  Raytracer incorporated into sphere prog…  Anders Damsgaard
 (DIR) 2012-11-08 11:31  The output number should be printed in …  Anders Damsgaard
 (DIR) 2012-11-08 11:25  Changed format for writing, and contact…  Anders Damsgaard
 (DIR) 2012-11-08 11:24  Changed order in params struct            Anders Damsgaard
 (DIR) 2012-11-08 11:24  Reformatted output                        Anders Damsgaard
 (DIR) 2012-11-06 13:26  Raytracer now working                     Anders Damsgaard
 (DIR) 2012-11-04 15:52  Raytracer included as cuh header file, …  Anders Damsgaard
 (DIR) 2012-11-04 12:05  More progress on implementing raytracer…  Anders Damsgaard
 (DIR) 2012-11-02 08:29  IO now works in Python, C++ and CUDA, s…  Anders Damsgaard
 (DIR) 2012-10-31 18:38  Bugfixes, however still segfaulting       Anders Damsgaard
 (DIR) 2012-10-31 07:59  Fixed typo                                Anders Damsgaard
 (DIR) 2012-10-31 07:58  Wall viscosities now in constant parame…  Anders Damsgaard
 (DIR) 2012-10-31 07:57  Added wall viscosities to wall contact …  Anders Damsgaard
 (DIR) 2012-10-30 14:14  Added cmd-line arg processing             Anders Damsgaard
 (DIR) 2012-10-30 12:35  All IO routines are now working correct…  Anders Damsgaard
 (DIR) 2012-10-29 13:21  File read in file_io.cpp not working. T…  Anders Damsgaard
 (DIR) 2012-10-29 12:41  Added custom compare function to Sphere…  Anders Damsgaard
 (DIR) 2012-10-28 20:42  Modified __init__ and IO functions of S…  Anders Damsgaard C…
 (DIR) 2012-10-26 22:37  It compiles without errors. Still need …  Anders Damsgaard
 (DIR) 2012-10-26 21:15  Changed to class type in free...          Anders Damsgaard C…
 (DIR) 2012-10-26 21:13  Bugfixes                                  Anders Damsgaard C…
 (DIR) 2012-10-26 21:09  Removed contact information output        Anders Damsgaard C…
 (DIR) 2012-10-26 21:08  Added destructor declaration              Anders Damsgaard C…
 (DIR) 2012-10-26 21:05  Further work on implementing OO           Anders Damsgaard C…
 (DIR) 2012-10-26 19:19  Restructuring code to OO                  Anders Damsgaard
 (DIR) 2012-10-26 14:01  Big restructuring, moving towards OO fo…  Anders Damsgaard
 (DIR) 2012-10-24 13:40  Removed nostats flag from ffmpeg flag     Anders Damsgaard
 (DIR) 2012-10-24 11:20  Added ffmpeg video() command to sphere …  Anders Damsgaard
 (DIR) 2012-10-23 12:09  Removed DEVCODE option                    Anders Damsgaard
 (DIR) 2012-10-23 12:08  Removed DEVCODE option                    Anders Damsgaard
 (DIR) 2012-10-23 08:42  Removed debug breakpoints                 Anders Damsgaard
 (DIR) 2012-10-23 07:59  Reordered output during const. mem. che…  Anders Damsgaard
 (DIR) 2012-10-22 18:42  cuPrintf calls removed                    Anders Damsgaard
 (DIR) 2012-10-22 18:41  Now with correct sizeof() parameter       Anders Damsgaard
 (DIR) 2012-10-22 12:28  Renamed gamma_ws to gamma_wt              Anders Damsgaard
 (DIR) 2012-10-22 09:37  gamma_ws renamed to gamma_wt              Anders Damsgaard
 (DIR) 2012-10-22 08:10  Most constant device parameters are mov…  Anders Damsgaard
 (DIR) 2012-10-19 14:53  Added cuda install path to makefile       Anders Damsgaard
 (DIR) 2012-10-19 14:11  Changed output format for profiling sta…  Anders Damsgaard
 (DIR) 2012-10-19 13:29  savefig=True as default in visualize()    Anders Damsgaard
 (DIR) 2012-10-19 07:57  Makefile updated, assuming nvcc is in t…  Anders Damsgaard
 (DIR) 2012-10-17 08:59  Profiling output now default ON           Anders Damsgaard
 (DIR) 2012-10-17 08:59  Finished implementation of Hertzian con…  Anders Damsgaard
 (DIR) 2012-10-16 15:23  Removed problematic symbols               Anders Damsgaard
 (DIR) 2012-10-16 15:07  contactLinear default                     Anders Damsgaard
 (DIR) 2012-10-16 14:26  Hertzian nonlinear contact model added.…  Anders Damsgaard
 (DIR) 2012-10-16 14:18  Fixed spring readjustment value in cont…  Anders Damsgaard
 (DIR) 2012-10-16 10:26  Expanded profiling information            Anders Damsgaard
 (DIR) 2012-10-15 13:02  Changed memory free calls                 Anders Damsgaard
 (DIR) 2012-10-15 12:29  Shearmodel=2 refinements                  Anders Damsgaard
 (DIR) 2012-10-12 09:41  Added default values to parameters in i…  Anders Damsgaard
 (DIR) 2012-10-12 08:42  Updated raytracer for angpos arrays       Anders Damsgaard
 (DIR) 2012-10-11 09:30  README updated                            Anders Damsgaard
 (DIR) 2012-10-11 09:05  Removed redundant zeroing of delta_t      Anders Damsgaard
 (DIR) 2012-10-11 07:28  Added angular position information in d…  Anders Damsgaard
 (DIR) 2012-10-11 06:51  Contactmodels changes                     Anders Damsgaard
 (DIR) 2012-10-10 09:37  Added break when contact is found in co…  Anders Damsgaard
 (DIR) 2012-10-10 09:30  Removed error message                     Anders Damsgaard
 (DIR) 2012-10-10 09:28  Possible major bugfix; reuse of old con…  Anders Damsgaard
 (DIR) 2012-10-10 09:02  Removed NC error reporting, an error ex…  Anders Damsgaard
 (DIR) 2012-10-10 08:50  Redirected error messages to stderr, an…  Anders Damsgaard
 (DIR) 2012-10-10 08:12  Added xsum visualization in raytracer     Anders Damsgaard
 (DIR) 2012-10-10 07:42  Multiplot rearrangement                   Anders Damsgaard
 (DIR) 2012-10-10 07:36  Removed trailing char                     Anders Damsgaard
 (DIR) 2012-10-10 07:35  Preallocation of Es and Es_dot in energ…  Anders Damsgaard
 (DIR) 2012-10-10 07:33  Added visualization method for viscous …  Anders Damsgaard
 (DIR) 2012-10-09 12:02  Dot product for finding path along force  Anders Damsgaard
 (DIR) 2012-10-09 11:58  Force length insted of vector in es_dot   Anders Damsgaard
 (DIR) 2012-10-09 11:56  Added energy loss calculation for norma…  Anders Damsgaard
 (DIR) 2012-10-09 07:33  Changed input algorithm for raytracer t…  Anders Damsgaard
 (DIR) 2012-10-04 18:44  Added ev and ev_dot arrays for energy l…  Anders Damsgaard
 (DIR) 2012-09-30 19:51  Removed rolling radius, substituted wit…  Anders Damsgaard
 (DIR) 2012-09-30 19:42  Added more syncthreads() to contactsear…  Anders Damsgaard
 (DIR) 2012-09-26 09:51  Changed units in sigma and tau from hPa…  Anders Damsgaard
 (DIR) 2012-09-26 09:45  Changed units in xdisp from cm to mm      Anders Damsgaard
 (DIR) 2012-09-26 09:10  Updated shear stress output to text file  Anders Damsgaard
 (DIR) 2012-09-26 08:20  Added text-file output for shear stress…  Anders Damsgaard
 (DIR) 2012-09-25 07:17  Merge branch 'master' of https://github…  Anders Damsgaard
 (DIR) 2012-09-25 07:17  shearmodel=2 now uses contactLinear       Anders Damsgaard
 (DIR) 2012-09-10 07:44  Reordered wall integration kernel         Anders Damsgaard
 (DIR) 2012-09-07 07:00  Substituted contactLinear with contactL…  Anders Damsgaard
 (DIR) 2012-09-06 12:50  Changed default parameter values          Anders Damsgaard
 (DIR) 2012-09-06 12:38  Removed precision reporting during file…  Anders Damsgaard
 (DIR) 2012-09-06 12:31  Re-enabled wmode in wall integration      Anders Damsgaard
 (DIR) 2012-09-06 12:22  Added missing [j] in sizeof operation d…  Anders Damsgaard
 (DIR) 2012-09-06 11:36  Renamed exec to run                       Anders Damsgaard
 (DIR) 2012-09-06 11:33  Added exec python function, which execu…  Anders Damsgaard
 (DIR) 2012-09-06 11:09  Added missing wmode write in single pre…  Anders Damsgaard
 (DIR) 2012-09-06 08:51  Bugfixes in porosity()                    Anders Damsgaard
 (DIR) 2012-09-06 06:43  wmode read disabled                       Anders Damsgaard
 (DIR) 2012-09-06 06:43  shearmodel=2 contact model back to cont…  Anders Damsgaard
 (DIR) 2012-09-06 06:33  Removed recursive option for make clear   Anders Damsgaard
 (DIR) 2012-09-06 06:28  Added porosity()                          Anders Damsgaard
 (DIR) 2012-09-05 07:51  Temporarily removed wmode=1 wall integr…  Anders Damsgaard
 (DIR) 2012-09-04 07:22  Temporarily replaced contactLinear with…  Anders Damsgaard
 (DIR) 2012-09-04 07:07  Replaced __umul24 multiplication functi…  Anders Damsgaard
 (DIR) 2012-09-03 12:35  Renamed N to F                            Anders Damsgaard
 (DIR) 2012-09-03 12:27  overlapsInCell renamed to findAndProces…  Anders Damsgaard
 (DIR) 2012-09-03 12:21  Changed name of force sum to F instead …  Anders Damsgaard
 (DIR) 2012-09-03 12:18  Added comments to contact search functi…  Anders Damsgaard
 (DIR) 2012-09-03 11:59  Added new raytracer makefile              Anders Damsgaard
 (DIR) 2012-08-30 12:04  Broad commit                              Anders Damsgaard
 (DIR) 2012-08-30 10:47  Added uniaxialStrainRate                  Anders Damsgaard
 (DIR) 2012-08-30 09:54  Added velocity BC to wall integration a…  Anders Damsgaard
 (DIR) 2012-08-30 09:47  Added missing &                           Anders Damsgaard
 (DIR) 2012-08-30 09:46  wmode added                               Anders Damsgaard
 (DIR) 2012-08-30 09:46  host_wmode removed                        Anders Damsgaard
 (DIR) 2012-08-30 09:36  wmode added                               Anders Damsgaard
 (DIR) 2012-08-30 09:34  wmode added                               Anders Damsgaard
 (DIR) 2012-08-30 09:34  Added wmode                               Anders Damsgaard
 (DIR) 2012-08-30 08:54  Wall mode parameter added                 Anders Damsgaard
 (DIR) 2012-08-30 07:18  Fixed indentation error                   Anders Damsgaard
 (DIR) 2012-08-29 13:13  Fixed breakline typo                      Anders Damsgaard
 (DIR) 2012-08-29 12:16  Added python script for uniaxial compre…  Anders Damsgaard
 (DIR) 2012-08-29 11:56  Added void ratio function                 Anders Damsgaard
 (DIR) 2012-08-28 07:47  PPM->JPEG conversion in parallel          Anders Damsgaard
 (DIR) 2012-08-28 06:34  Raytracer scripts updated to sequential…  Anders Damsgaard
 (DIR) 2012-08-27 15:17  Readme corrected                          Anders Damsgaard
 (DIR) 2012-08-27 14:51  Parameters k_s and gamma_s renamed to k…  Anders Damsgaard
 (DIR) 2012-08-27 12:15  Code cleanup                              Anders Damsgaard
 (DIR) 2012-08-27 11:51  Merged distmod routines into single fun…  Anders Damsgaard
 (DIR) 2012-08-24 07:44  Lowered default time step length          Anders Damsgaard
 (DIR) 2012-08-23 11:44  Changed default values of physical para…  Anders Damsgaard
 (DIR) 2012-08-23 11:25  Profiling flag set to 0 as default        Anders Damsgaard
 (DIR) 2012-08-23 08:27  Updated README, doc still outdated        Anders Damsgaard
 (DIR) 2012-08-23 08:20  Get CWD modifications                     Anders Damsgaard
 (DIR) 2012-08-23 08:17  Changed error return method and added p…  Anders Damsgaard
 (DIR) 2012-08-22 11:19  Updated sources                           Anders Damsgaard
 (DIR) 2012-08-20 14:39  Added missing o-ppm.cpp                   Anders Damsgaard
 (DIR) 2012-08-20 14:36  Major revision: Double precision, kerne…  Anders Damsgaard
 (DIR) 2012-04-16 13:20  Updated readme                            Anders Damsgaard C…
 (DIR) 2012-04-16 12:52  Several important bugfixes                Anders Damsgaard C…
 (DIR) 2012-02-23 11:19  Wall visualilzation changed               Anders Damsgaard C…
 (DIR) 2012-02-23 11:18  Elastc shearmodel fixed                   Anders Damsgaard C…
 (DIR) 2012-02-22 09:23  Public github launch                      Anders Damsgaard C…
       
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